Phyre 2 Results for RVBD3812_(PE_PGRS62)_4276749

Email	mdejesus@rockefeller.edu
Description	RVBD3812_(PE_PGRS62)_4276749_4278263
Date	Fri Aug 9 18:20:52 BST 2019
Unique Job ID	c35db64003ac16b8
Sequence	VSFVVTVPEA ... Download FASTA
Job Type	normal
Job Expiry

Summary

Top model

Image coloured by rainbow N → C terminus

Model dimensions (Å):

X:40.590 Y:35.740 Z:52.235

Model (left) based on template c5xfsA_

Top template information

PDB header:protein transport
Chain: A: PDB Molecule:pe family protein pe8;
PDBTitle: crystal structure of pe8-ppe15 in complex with espg5 from m.2 tuberculosis

Confidence and coverage

Confidence:

100.0%

Coverage:

15%

78 residues ( 15% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.

You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.

Warning: 51% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.

3D viewing

Interactive 3D view in JSmol

For other options to view your downloaded structure offline see the FAQ

Sequence analysis

Download FASTA version

Secondary structure and disorder prediction [Show]

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60

Sequence V S F V V T V P E A V A A A A G D L A A I G S T L R E A T A A A A G P T T G L A A A A A D D V S I A V S Q L F G R Y G Q

Secondary structure

SS confidence

Disorder ? ? ?
? ?
?
?

Disorder confidence

. . . . . . . . . 70 . . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120

Sequence E F Q T V S N Q L A A F H T E F V R T L N R G A A A Y L N T E S A N G G Q L F G Q I E A G Q R A V S A A A A A A P G G A

Secondary structure

SS confidence

Disorder
? ?
? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 130 . . . . . . . . . 140 . . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180

Sequence Y G Q L V A N T A T N L E S L Y G A W S A N P F P F L R Q I I A N Q Q V Y W Q Q I A A A L A N A V Q N F P A L V A N L P

Secondary structure

SS confidence

Disorder ? ? ?
? ? ? ? ? ? ? ? ? ? ? ? ? ?
?
?
? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210 . . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240

Sequence A A I D A A V Q Q F L A F N A A Y Y I Q Q I I S S Q I G F A Q L F A T T V G Q G V T S V I A G W P N L A A E L Q L A F Q

Secondary structure

SS confidence

Disorder ? ?
? ? ? ? ? ? ? ?
?
? ?
? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280 . . . . . . . . . 290 . . . . . . . . . 300

Sequence Q L L V G D Y N A A V A N L G K A M T N L L V T G F D T S D V T I G T M G T T I S V T A K P K L L G P L G D L F T I M T

Secondary structure

SS confidence

Disorder
? ? ? ? ? ?
? ? ?
?
? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
? ? ? ? ? ?
? ? ?
?

Disorder confidence

. . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350 . . . . . . . . . 360

Sequence I P A Q E A Q Y F T N L M P P S I L R D M S Q N F T N V L T T L S N P N I Q A V A S F D I A T T A G T L S T F F G V P L

Secondary structure

SS confidence

Disorder ? ?
? ?
? ?
? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence V L T Y A T L G A P F A S L N A I A T S A E T I E Q A L L A G N Y L G A V G A L I D A P A H A L D G F L N S A T V L D T

Secondary structure

SS confidence

Disorder
? ?
?
? ? ? ?
? ?
? ?
? ?
?

Disorder confidence

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480

Sequence P I L V P T G L P S P L P P T V G I T L H L P F D G I L V P P H P V T A T I S F P G A P V P I P G F P T T V T V F G T P

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
?
? ? ? ? ? ? ? ? ? ?
? ?
? ? ?

Disorder confidence

. . . . . . . . . 490 . . . . . . . . . 500 . . . .

Sequence F M G M A P L L I N Y I P Q Q L A L A I K P A A

Secondary structure

SS confidence

Disorder ?
? ? ? ? ? ?

Disorder confidence

Confidence Key
High(9) Low (0)

? Disordered ( 51%)

Alpha helix ( 51%)

Beta strand ( 7%)

TM helix ( 3%)
(View membrane topology prediction)

Domain analysis [Show]

Rank Aligned region

PDB 5xfs chain A

3D model

Region: 7 - 84
Aligned: 78
Modelled: 78
Confidence: 100.0%
Identity: 46%
PDB header:protein transport
Chain: A: PDB Molecule:pe family protein pe8;
PDBTitle: crystal structure of pe8-ppe15 in complex with espg5 from m.2 tuberculosis

Phyre2

PDB 2g38 chain A domain 1

3D model

Region: 8 - 84
Aligned: 77
Modelled: 77
Confidence: 100.0%
Identity: 29%
Fold: Ferritin-like
Superfamily: PE/PPE dimer-like
Family: PE

Phyre2

PDB 2g38 chain A

Region: 8 - 84
Aligned: 77
Modelled: 77
Confidence: 100.0%
Identity: 29%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:pe family protein;
PDBTitle: a pe/ppe protein complex from mycobacterium tuberculosis

Phyre2

PDB 3gvm chain A

3D model

Region: 1 - 98
Aligned: 94
Modelled: 98
Confidence: 27.7%
Identity: 13%
PDB header:viral protein
Chain: A: PDB Molecule:putative uncharacterized protein sag1039;
PDBTitle: structure of the homodimeric wxg-100 family protein from streptococcus2 agalactiae

Phyre2

PDB 1lgh chain B

3D model

Region: 68 - 80
Aligned: 13
Modelled: 13
Confidence: 25.3%
Identity: 31%
Fold: Light-harvesting complex subunits
Superfamily: Light-harvesting complex subunits
Family: Light-harvesting complex subunits

Phyre2

PDB 2w0c chain R

Region: 45 - 81
Aligned: 37
Modelled: 37
Confidence: 15.1%
Identity: 11%
PDB header:virus
Chain: R: PDB Molecule:protein p3;
PDBTitle: x-ray structure of the entire lipid-containing bacteriophage pm2

Phyre2

PDB 1wrg chain A

3D model

Region: 68 - 80
Aligned: 13
Modelled: 13
Confidence: 13.8%
Identity: 23%
PDB header:membrane protein
Chain: A: PDB Molecule:light-harvesting protein b-880, beta chain;
PDBTitle: light-harvesting complex 1 beta subunit from wild-type2 rhodospirillum rubrum

Phyre2

PDB 6et5 chain U

3D model

Region: 68 - 80
Aligned: 13
Modelled: 13
Confidence: 10.7%
Identity: 31%
PDB header:photosynthesis
Chain: U: PDB Molecule:light-harvesting protein b-1015 gamma chain;
PDBTitle: reaction centre light harvesting complex 1 from blc. virids

Phyre2

PDB 1wa8 chain A domain 1

3D model

Region: 4 - 102
Aligned: 95
Modelled: 99
Confidence: 10.0%
Identity: 15%
Fold: Ferritin-like
Superfamily: EsxAB dimer-like
Family: ESAT-6 like

Phyre2

PDB 2kg7 chain B

Region: 1 - 97
Aligned: 93
Modelled: 97
Confidence: 9.2%
Identity: 20%
PDB header:unknown function
Chain: B: PDB Molecule:esat-6-like protein esxh;
PDBTitle: structure and features of the complex formed by the tuberculosis2 virulence factors rv0287 and rv0288

Phyre2

PDB 1kh0 chain A

3D model

Region: 413 - 446
Aligned: 23
Modelled: 34
Confidence: 8.1%
Identity: 30%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: Immunoglobulin-binding domains
Family: Immunoglobulin-binding domains

Phyre2

PDB 3h6p chain B

Region: 61 - 79
Aligned: 19
Modelled: 19
Confidence: 6.2%
Identity: 37%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:esat-6 like protein esxs;
PDBTitle: crystal structure of rv3019c-rv3020c from mycobacterium tuberculosis

Phyre2

PDB 4qpg chain A

3D model

Region: 439 - 476
Aligned: 38
Modelled: 38
Confidence: 5.8%
Identity: 18%
PDB header:virus
Chain: A: PDB Molecule:capsid protein vp1;
PDBTitle: crystal structure of empty hepatitis a virus

Phyre2

PDB 4qpi chain A

Region: 439 - 476
Aligned: 38
Modelled: 38
Confidence: 5.6%
Identity: 18%
PDB header:virus
Chain: A: PDB Molecule:capsid protein vp1;
PDBTitle: crystal structure of hepatitis a virus

Phyre2

1
c5xfsA_

2
d2g38a1

3
c2g38A_

4
c3gvmA_

5
d1lghb_

6
c2w0cR_

7
c1wrgA_

8
c6et5u_

9
d1wa8a1

10
c2kg7B_

11
d1kh0a_

12
c3h6pB_

13
c4qpgA_

14
c4qpiA_