Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3814c_(-)_4279408_4280193
DateFri Aug 9 18:20:52 BST 2019
Unique Job ID37de9685018e1e12
SequenceMAEPFFRMME ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:45.674 Y:48.034 Z:52.426
Model (left) based on template c5kymA_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:1-acyl-sn-glycerol-3-phosphate acyltransferase;
PDBTitle: crystal structure of the 1-acyl-sn-glycerophosphate (lpa)2 acyltransferase, plsc, from thermotoga maritima
Confidence and coverage
Confidence:100.0% Coverage: 75%
195 residues ( 75% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
252 residues ( 97%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
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Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5kymA_



100.0 23
PDB header:transferase
Chain: A: PDB Molecule:1-acyl-sn-glycerol-3-phosphate acyltransferase;
PDBTitle: crystal structure of the 1-acyl-sn-glycerophosphate (lpa)2 acyltransferase, plsc, from thermotoga maritima
2c5f34A_



99.8 14
PDB header:transferase
Chain: A: PDB Molecule:phosphatidylinositol mannoside acyltransferase;
PDBTitle: crystal structure of membrane associated pata from mycobacterium2 smegmatis in complex with s-hexadecyl coenzyme a - p21 space group
3c5knkB_



99.7 17
PDB header:transferase
Chain: B: PDB Molecule:lipid a biosynthesis lauroyl acyltransferase;
PDBTitle: lipid a secondary acyltransferase lpxm from acinetobacter baumannii2 with catalytic residue substitution (e127a)
4d1iuqa_



99.1 14
Fold:Glycerol-3-phosphate (1)-acyltransferase
Superfamily:Glycerol-3-phosphate (1)-acyltransferase
Family:Glycerol-3-phosphate (1)-acyltransferase
5c6g2dC_



35.5 12
PDB header:ligase
Chain: C: PDB Molecule:acetyl-coa carboxylase 1;
PDBTitle: citrate-induced acetyl-coa carboxylase (acc-cit) filament at 5.4 a2 resolution
6c4mxnB_



31.7 8
PDB header:hydrolase
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative glycosyl hydrolase (parmer_00599) from2 parabacteroides merdae atcc 43184 at 1.95 a resolution
7c3hkxA_



22.7 14
PDB header:hydrolase
Chain: A: PDB Molecule:amidase;
PDBTitle: crystal structure analysis of an amidase from nesterenkonia sp.
8c2ov3A_



21.9 13
PDB header:transport protein
Chain: A: PDB Molecule:periplasmic binding protein component of an abc type zinc
PDBTitle: crystal structure of 138-173 znua deletion mutant plus zinc bound
9c3zppA_



20.3 19
PDB header:cell adhesion
Chain: A: PDB Molecule:cell wall surface anchor family protein;
PDBTitle: structure of the streptococcus pneumoniae surface protein2 and adhesin pfba
10c4cyyA_



19.4 12
PDB header:hydrolase
Chain: A: PDB Molecule:pantetheinase;
PDBTitle: the structure of vanin-1: defining the link between metabolic disease,2 oxidative stress and inflammation
11c3jurA_



18.5 16
PDB header:hydrolase
Chain: A: PDB Molecule:exo-poly-alpha-d-galacturonosidase;
PDBTitle: the crystal structure of a hyperthermoactive exopolygalacturonase from2 thermotoga maritima
12c5olpB_



17.3 19
PDB header:hydrolase
Chain: B: PDB Molecule:pectate lyase;
PDBTitle: galacturonidase
13d1pq4a_



17.1 12
Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:TroA-like
14c2e11B_



16.0 16
PDB header:hydrolase
Chain: B: PDB Molecule:hydrolase;
PDBTitle: the crystal structure of xc1258 from xanthomonas campestris: a cn-2 hydrolase superfamily protein with an arsenic adduct in the active3 site
15c5khaA_



15.1 12
PDB header:ligase
Chain: A: PDB Molecule:glutamine-dependent nad+ synthetase;
PDBTitle: structure of glutamine-dependent nad+ synthetase from acinetobacter2 baumannii in complex with adenosine diphosphate (adp)
16c1r0lD_



15.0 15
PDB header:oxidoreductase
Chain: D: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase;
PDBTitle: 1-deoxy-d-xylulose 5-phosphate reductoisomerase from zymomonas mobilis2 in complex with nadph
17c2ogwB_



14.5 18
PDB header:transport protein
Chain: B: PDB Molecule:high-affinity zinc uptake system protein znua
PDBTitle: structure of abc type zinc transporter from e. coli
18c5uyvA_



14.0 18
PDB header:metal transport
Chain: A: PDB Molecule:periplasmic chelated iron-binding protein yfea;
PDBTitle: yfea ancillary sites that do not co-load with site 2
19c4hnvB_



12.9 13
PDB header:ligase
Chain: B: PDB Molecule:pyruvate carboxylase;
PDBTitle: crystal structure of r54e mutant of s. aureus pyruvate carboxylase
20d1v7za_



12.5 17
Fold:Creatininase
Superfamily:Creatininase
Family:Creatininase
21c6r6kB_



not modelled 12.0 17
PDB header:protein transport
Chain: B: PDB Molecule:abc transporter substrate-binding protein;
PDBTitle: structure of a fpvc mutant from pseudomonas aeruginosa
22c3a14B_



not modelled 11.7 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase;
PDBTitle: crystal structure of dxr from thermotoga maritima, in complex with2 nadph
23d2ffca1



not modelled 11.6 14
Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Decarboxylase
24c2pyhB_



not modelled 11.0 16
PDB header:isomerase
Chain: B: PDB Molecule:poly(beta-d-mannuronate) c5 epimerase 4;
PDBTitle: azotobacter vinelandii mannuronan c-5 epimerase alge4 a-module2 complexed with mannuronan trisaccharide
25c5n6mA_



not modelled 10.8 12
PDB header:membrane protein
Chain: A: PDB Molecule:apolipoprotein n-acyltransferase;
PDBTitle: structure of the membrane integral lipoprotein n-acyltransferase lnt2 from p. aeruginosa
26c5vrhA_



not modelled 10.7 9
PDB header:transferase
Chain: A: PDB Molecule:apolipoprotein n-acyltransferase;
PDBTitle: apolipoprotein n-acyltransferase c387s active site mutant
27c3va7A_



not modelled 10.4 21
PDB header:ligase
Chain: A: PDB Molecule:klla0e08119p;
PDBTitle: crystal structure of the kluyveromyces lactis urea carboxylase
28c3w7bB_



not modelled 10.4 17
PDB header:hydrolase
Chain: B: PDB Molecule:formyltetrahydrofolate deformylase;
PDBTitle: crystal structure of formyltetrahydrofolate deformylase from thermus2 thermophilus hb8
29c3bg5B_



not modelled 10.0 13
PDB header:ligase
Chain: B: PDB Molecule:pyruvate carboxylase;
PDBTitle: crystal structure of staphylococcus aureus pyruvate carboxylase
30c2o1eB_



not modelled 9.8 20
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:ycdh;
PDBTitle: crystal structure of the metal-dependent lipoprotein ycdh2 from bacillus subtilis, northeast structural genomics3 target sr583
31c2ps3A_



not modelled 9.8 18
PDB header:metal transport
Chain: A: PDB Molecule:high-affinity zinc uptake system protein znua;
PDBTitle: structure and metal binding properties of znua, a periplasmic zinc2 transporter from escherichia coli
32c4cl2A_



not modelled 9.7 15
PDB header:transport protein
Chain: A: PDB Molecule:periplasmic solute binding protein;
PDBTitle: structure of periplasmic metal binding protein from candidatus2 liberibacter asiaticus
33c3ve9B_



not modelled 9.4 10
PDB header:lyase
Chain: B: PDB Molecule:orotidine-5'-phosphate decarboxylase;
PDBTitle: crystal structure of orotidine 5'-monophosphate decarboxylase from2 metallosphaera sedula
34c1emsB_



not modelled 9.1 10
PDB header:antitumor protein
Chain: B: PDB Molecule:nit-fragile histidine triad fusion protein;
PDBTitle: crystal structure of the c. elegans nitfhit protein
35d1kl7a_



not modelled 8.7 15
Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes
36c2uveA_



not modelled 8.7 15
PDB header:hydrolase
Chain: A: PDB Molecule:exopolygalacturonase;
PDBTitle: structure of yersinia enterocolitica family 282 exopolygalacturonase
37d1hrua_



not modelled 8.5 29
Fold:YrdC/RibB
Superfamily:YrdC/RibB
Family:YrdC-like
38d2q8za1



not modelled 8.4 22
Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Decarboxylase
39d1o59a2



not modelled 8.2 18
Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:Allantoicase repeat
40c4imyI_



not modelled 8.2 9
PDB header:transferase
Chain: I: PDB Molecule:af4/fmr2 family member 4;
PDBTitle: the aff4 scaffold binds human p-tefb adjacent to hiv tat
41c4imyG_



not modelled 8.2 9
PDB header:transferase
Chain: G: PDB Molecule:af4/fmr2 family member 4;
PDBTitle: the aff4 scaffold binds human p-tefb adjacent to hiv tat
42c4imyH_



not modelled 8.1 9
PDB header:transferase
Chain: H: PDB Molecule:af4/fmr2 family member 4;
PDBTitle: the aff4 scaffold binds human p-tefb adjacent to hiv tat
43d1lg7a_



not modelled 8.1 22
Fold:VSV matrix protein
Superfamily:VSV matrix protein
Family:VSV matrix protein
44d1o59a1



not modelled 7.9 27
Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:Allantoicase repeat
45d1aopa2



not modelled 7.5 21
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:Duplicated SiR/NiR-like domains 1 and 3
46c3eqnB_



not modelled 7.4 14
PDB header:hydrolase
Chain: B: PDB Molecule:glucan 1,3-beta-glucosidase;
PDBTitle: crystal structure of beta-1,3-glucanase from phanerochaete2 chrysosporium (lam55a)
47c4xrvB_



not modelled 7.4 19
PDB header:metal binding protein
Chain: B: PDB Molecule:periplasmic solute binding protein;
PDBTitle: structure of a zn abc transporter substrate binding protein from2 paracoccus denitrificans
48c2eghA_



not modelled 6.8 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase;
PDBTitle: crystal structure of 1-deoxy-d-xylulose 5-phosphate reductoisomerase2 complexed with a magnesium ion, nadph and fosmidomycin
49d2fdsa1



not modelled 6.7 8
Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Decarboxylase
50c2fdsA_



not modelled 6.7 8
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:orotidine-monophosphate-decarboxylase;
PDBTitle: crystal structure of plasmodium berghei orotidine 5'-monophosphate2 decarboxylase (ortholog of plasmodium falciparum pf10_0225)
51d1q0qa2



not modelled 6.3 17
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
52d1w98b1



not modelled 6.2 15
Fold:Cyclin-like
Superfamily:Cyclin-like
Family:Cyclin
53d1rmga_



not modelled 6.1 8
Fold:Single-stranded right-handed beta-helix
Superfamily:Pectin lyase-like
Family:Galacturonase
54c3mfqB_



not modelled 6.0 14
PDB header:metal binding protein
Chain: B: PDB Molecule:high-affinity zinc uptake system protein znua;
PDBTitle: a glance into the metal binding specificity of troa: where elaborate2 behaviors occur in the active center
55c2zo7A_



not modelled 5.4 31
PDB header:luminescent protein
Chain: A: PDB Molecule:cyan/green-emitting gfp-like protein, kusabira-cyan mutant
PDBTitle: crystal structure of a kusabira-cyan mutant (kcy-r1), a cyan/green-2 emitting gfp-like protein
56c4qskB_



not modelled 5.3 19
PDB header:ligase
Chain: B: PDB Molecule:pyruvate carboxylase;
PDBTitle: crystal structure of l. monocytogenes pyruvate carboxylase in complex2 with cyclic-di-amp
57c3obiC_



not modelled 5.3 11
PDB header:hydrolase
Chain: C: PDB Molecule:formyltetrahydrofolate deformylase;
PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (np_949368)2 from rhodopseudomonas palustris cga009 at 1.95 a resolution
58d1xvla1



not modelled 5.2 13
Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:TroA-like

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below