Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3819_(-)_4284174_4284509
DateFri Aug 9 18:20:53 BST 2019
Unique Job ID1c8c3a634c441d9d
SequenceMMQFYDDGVV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:33.264 Y:36.514 Z:40.604
Model (left) based on template c5a3gA_
Top template information
PDB header:viral protein
Chain: A: PDB Molecule:m50;
PDBTitle: structure of herpesvirus nuclear egress complex subunit m50
Confidence and coverage
Confidence: 89.2% Coverage: 56%
62 residues ( 56% of your sequence) have been modelled with 89.2% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5a3gA_



89.2 21
PDB header:viral protein
Chain: A: PDB Molecule:m50;
PDBTitle: structure of herpesvirus nuclear egress complex subunit m50
2c4tyzB_



63.5 13
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of the c-terminal domain of an unknown protein from2 leishmania infantum
3d2hthb1



58.8 20
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:VPS36 N-terminal domain-like
4c4xuuD_



57.9 12
PDB header:protein binding
Chain: D: PDB Molecule:phosphatidylinositide phosphatase sac2;
PDBTitle: the hsac2 domain from human phosphoinositide phosphatase sac2
5d1boba_



51.2 24
Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:N-acetyl transferase, NAT
6c5d5nA_



39.6 19
PDB header:viral protein
Chain: A: PDB Molecule:virion egress protein ul34 homolog;
PDBTitle: crystal structure of the human cytomegalovirus pul50-pul53 complex
7c2p0wB_



39.0 14
PDB header:transferase
Chain: B: PDB Molecule:histone acetyltransferase type b catalytic subunit;
PDBTitle: human histone acetyltransferase 1 (hat1)
8d2rnrb1



38.5 13
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:TFIIH domain
9c3ffrA_



34.5 12
PDB header:transferase
Chain: A: PDB Molecule:phosphoserine aminotransferase serc;
PDBTitle: crystal structure of a phosphoserine aminotransferase serc (chu_0995)2 from cytophaga hutchinsonii atcc 33406 at 1.75 a resolution
10c5husA_



32.8 17
PDB header:transferase
Chain: A: PDB Molecule:trehalose synthase regulatory protein;
PDBTitle: structure of candida albicans trehalose synthase regulatory protein c-2 terminal domain
11c4r8gE_



31.6 22
PDB header:protein binding/calcium-binding protein
Chain: E: PDB Molecule:unconventional myosin-ic;
PDBTitle: crystal structure of myosin-1c tail in complex with calmodulin
12c3f0hA_



29.7 8
PDB header:transferase
Chain: A: PDB Molecule:aminotransferase;
PDBTitle: crystal structure of aminotransferase (rer070207000802) from2 eubacterium rectale at 1.70 a resolution
13d1qz9a_



28.5 14
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
14c3ftbA_



28.1 12
PDB header:transferase
Chain: A: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: the crystal structure of the histidinol-phosphate aminotransferase2 from clostridium acetobutylicum
15c3getA_



28.1 17
PDB header:transferase
Chain: A: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: crystal structure of putative histidinol-phosphate aminotransferase2 (np_281508.1) from campylobacter jejuni at 2.01 a resolution
16c3ly1C_



26.9 13
PDB header:transferase
Chain: C: PDB Molecule:putative histidinol-phosphate aminotransferase;
PDBTitle: crystal structure of putative histidinol-phosphate aminotransferase2 (yp_050345.1) from erwinia carotovora atroseptica scri1043 at 1.80 a3 resolution
17c3lfxE_



26.8 19
PDB header:structural genomics, unknown function
Chain: E: PDB Molecule:uncharacterized protein;
PDBTitle: structure of tm1797, a cas1 protein from thermotoga maritima
18c4r8dB_



26.5 4
PDB header:transferase
Chain: B: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: crystal structure of rv1600 encoded aminotransferase in complex with2 plp-mes from mycobacterium tuberculosis
19d1lc5a_



24.3 17
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
20c3fkdC_



22.7 21
PDB header:lyase
Chain: C: PDB Molecule:l-threonine-o-3-phosphate decarboxylase;
PDBTitle: the crystal structure of l-threonine-o-3-phosphate decarboxylase from2 porphyromonas gingivalis
21c4isyB_



not modelled 22.4 11
PDB header:transferase
Chain: B: PDB Molecule:cysteine desulfurase;
PDBTitle: crystal structure of iscs from mycobacterium tuberculosis
22c4wwrD_



not modelled 22.1 7
PDB header:transport protein
Chain: D: PDB Molecule:ubiquitin-like protein 4a;
PDBTitle: crystal structure of bag6-ubl4a dimerization domain
23d2caya1



not modelled 21.9 19
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:VPS36 N-terminal domain-like
24d1vjoa_



not modelled 21.5 16
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
25c6j5bC_



not modelled 21.5 18
PDB header:transcription/dna
Chain: C: PDB Molecule:protein phosphate starvation response 1;
PDBTitle: structural basis for the target dna recognition and binding by the myb2 domain of phosphate starvation response regulator 1
26c5vyeA_



not modelled 20.7 15
PDB header:lyase
Chain: A: PDB Molecule:l-threonine aldolase;
PDBTitle: crystal structure of l-threonine aldolase from pseudomonas putida
27c4xk1A_



not modelled 20.5 12
PDB header:transferase
Chain: A: PDB Molecule:phosphoserine aminotransferase;
PDBTitle: crystal structure of a phosphoserine/phosphohydroxythreonine2 aminotransferase (psat) from pseudomonas aeruginosa with cofactor3 pyridoxal phosphate and bound glutamate
28c5i90A_



not modelled 19.6 20
PDB header:transferase
Chain: A: PDB Molecule:pvdn;
PDBTitle: crystal structure of pvdn from pseudomonas aeruginosa
29d2q3la1



not modelled 19.3 17
Fold:SpoIIaa-like
Superfamily:SpoIIaa-like
Family:Sfri0576-like
30c2yrrA_



not modelled 19.2 24
PDB header:transferase
Chain: A: PDB Molecule:aminotransferase, class v;
PDBTitle: hypothetical alanine aminotransferase (tth0173) from thermus2 thermophilus hb8
31c3eucB_



not modelled 19.0 17
PDB header:transferase
Chain: B: PDB Molecule:histidinol-phosphate aminotransferase 2;
PDBTitle: crystal structure of histidinol-phosphate aminotransferase2 (yp_297314.1) from ralstonia eutropha jmp134 at 2.05 a resolution
32c4wbtA_



not modelled 19.0 13
PDB header:transferase
Chain: A: PDB Molecule:probable histidinol-phosphate aminotransferase;
PDBTitle: crystal structure of histidinol-phosphate aminotransferase from2 sinorhizobium meliloti in complex with pyridoxal-5'-phosphate
33c3lvmB_



not modelled 18.8 14
PDB header:transferase
Chain: B: PDB Molecule:cysteine desulfurase;
PDBTitle: crystal structure of e.coli iscs
34c5yb0I_



not modelled 18.7 9
PDB header:transferase
Chain: I: PDB Molecule:phosphoserine aminotransferase;
PDBTitle: crystal structure of wild type phosphoserine aminotransferase (psat)2 from e. histolytica
35d1jf9a_



not modelled 18.6 9
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
36c5yqrA_



not modelled 18.4 21
PDB header:transport protein
Chain: A: PDB Molecule:endolysin/membrane-anchored lipid-binding protein lam6
PDBTitle: crystal structure of the ph-like domain of lam6
37c4wwrB_



not modelled 17.8 7
PDB header:transport protein
Chain: B: PDB Molecule:ubiquitin-like protein 4a;
PDBTitle: crystal structure of bag6-ubl4a dimerization domain
38c3cq6E_



not modelled 17.7 13
PDB header:transferase
Chain: E: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: histidinol-phosphate aminotransferase from corynebacterium2 glutamicum holo-form (plp covalently bound )
39c4lnjA_



not modelled 16.7 17
PDB header:lyase
Chain: A: PDB Molecule:low-specificity l-threonine aldolase;
PDBTitle: structure of escherichia coli threonine aldolase in unliganded form
40d1f08a_



not modelled 15.8 21
Fold:Origin of replication-binding domain, RBD-like
Superfamily:Origin of replication-binding domain, RBD-like
Family:Replication initiation protein E1
41d1t3ia_



not modelled 15.5 13
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
42c3hdoB_



not modelled 15.4 17
PDB header:transferase
Chain: B: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: crystal structure of a histidinol-phosphate aminotransferase from2 geobacter metallireducens
43d1ug7a_



not modelled 15.4 14
Fold:Four-helical up-and-down bundle
Superfamily:Domain from hypothetical 2610208m17rik protein
Family:Domain from hypothetical 2610208m17rik protein
44d2ooka1



not modelled 15.2 22
Fold:SpoIIaa-like
Superfamily:SpoIIaa-like
Family:Sfri0576-like
45c5usrG_



not modelled 15.1 7
PDB header:transferase
Chain: G: PDB Molecule:cysteine desulfurase, mitochondrial;
PDBTitle: crystal structure of human nfs1-isd11 in complex with e. coli acyl-2 carrier protein at 3.09 angstroms
46d1rcqa2



not modelled 14.9 9
Fold:TIM beta/alpha-barrel
Superfamily:PLP-binding barrel
Family:Alanine racemase-like, N-terminal domain
47c4pw0A_



not modelled 14.8 18
PDB header:hydrolase
Chain: A: PDB Molecule:alpha/beta hydrolase fold protein;
PDBTitle: alpha/beta hydrolase fold protein from chitinophaga pinensis
48c3r3xA_



not modelled 14.5 20
PDB header:hydrolase
Chain: A: PDB Molecule:fluoroacetate dehalogenase;
PDBTitle: crystal structure of the fluoroacetate dehalogenase rpa1163 -2 asp110asn/bromoacetate
49d2vj0a1



not modelled 14.3 9
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Clathrin adaptor appendage domain
Family:Alpha-adaptin ear subdomain-like
50c6f77D_



not modelled 14.1 18
PDB header:transferase
Chain: D: PDB Molecule:aspartate aminotransferase a;
PDBTitle: crystal structure of the prephenate aminotransferase from rhizobium2 meliloti
51d1fg7a_



not modelled 14.0 14
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
52d1p3wa_



not modelled 13.7 13
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
53d1iuga_



not modelled 13.4 12
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
54d1kyfa1



not modelled 13.2 9
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Clathrin adaptor appendage domain
Family:Alpha-adaptin ear subdomain-like
55c3ffhA_



not modelled 13.1 26
PDB header:transferase
Chain: A: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: the crystal structure of histidinol-phosphate aminotransferase from2 listeria innocua clip11262.
56d2d9ta1



not modelled 12.9 25
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
57d1eg5a_



not modelled 12.8 21
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
58c2huuA_



not modelled 12.5 17
PDB header:transferase
Chain: A: PDB Molecule:alanine glyoxylate aminotransferase;
PDBTitle: crystal structure of aedes aegypti alanine glyoxylate aminotransferase2 in complex with alanine
59c2ju5A_



not modelled 12.3 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin disulfide isomerase;
PDBTitle: dsbh oxidoreductase
60c4q76B_



not modelled 12.3 16
PDB header:transferase
Chain: B: PDB Molecule:cysteine desulfurase 2, chloroplastic;
PDBTitle: crystal structure of nfs2 c384s mutant, the plastidial cysteine2 desulfurase from arabidopsis thaliana
61c5b0aA_



not modelled 12.2 22
PDB header:lyase
Chain: A: PDB Molecule:olivetolic acid cyclase;
PDBTitle: polyketide cyclase oac from cannabis sativa, h5q mutant
62c4ql6A_



not modelled 12.1 43
PDB header:hydrolase
Chain: A: PDB Molecule:carboxy-terminal processing protease;
PDBTitle: structure of c. trachomatis ct441
63d1m32a_



not modelled 11.9 0
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
64c5lxuA_



not modelled 11.9 33
PDB header:dna binding protein
Chain: A: PDB Molecule:transcription factor lux;
PDBTitle: structure of the dna-binding domain of lux arrhythmo
65c5xqgC_



not modelled 11.9 21
PDB header:lyase
Chain: C: PDB Molecule:pcrglx protein;
PDBTitle: crystal structure of a pl 26 exo-rhamnogalacturonan lyase from2 penicillium chrysogenum complexed with unsaturated galacturonosyl3 rhamnose
66c2fyfB_



not modelled 11.8 12
PDB header:transferase
Chain: B: PDB Molecule:phosphoserine aminotransferase;
PDBTitle: structure of a putative phosphoserine aminotransferase from2 mycobacterium tuberculosis
67c3wgcB_



not modelled 11.8 17
PDB header:lyase
Chain: B: PDB Molecule:l-allo-threonine aldolase;
PDBTitle: aeromonas jandaei l-allo-threonine aldolase h128y/s292r double mutant
68c3mcwA_



not modelled 11.7 20
PDB header:hydrolase
Chain: A: PDB Molecule:putative hydrolase;
PDBTitle: crystal structure of an a putative hydrolase of the isochorismatase2 family (cv_1320) from chromobacterium violaceum atcc 12472 at 1.06 a3 resolution
69c5b87B_



not modelled 10.9 13
PDB header:transferase
Chain: B: PDB Molecule:cysteine desulfurase;
PDBTitle: crystal structure of a cysteine desulfurase from thermococcus2 onnurineus na1 in complex with alanine at 2.3 angstrom resolution
70d1h0ca_



not modelled 10.8 20
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
71d2f69a1



not modelled 10.7 27
Fold:open-sided beta-meander
Superfamily:Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
Family:Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
72d2giya1



not modelled 10.6 4
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
73d1ogmx1



not modelled 10.4 29
Fold:Dextranase, N-terminal domain
Superfamily:Dextranase, N-terminal domain
Family:Dextranase, N-terminal domain
74c5o9eB_



not modelled 10.2 17
PDB header:ribosome
Chain: B: PDB Molecule:putative u3 small nucleolar ribonucleoprotein protein;
PDBTitle: crystal structure of the imp4-mpp10 complex from chaetomium2 thermophilum
75c6c9eB_



not modelled 10.1 8
PDB header:transferase
Chain: B: PDB Molecule:cysteine desulfurase;
PDBTitle: crystal structure of cysteine desulfurase from legionella pneumophila2 philadelphia 1
76c4aoaA_



not modelled 10.0 12
PDB header:transferase
Chain: A: PDB Molecule:beta-phenylalanine aminotransferase;
PDBTitle: biochemical properties and crystal structure of a novel2 beta-phenylalanine aminotransferase from variovorax3 paradoxus
77c5jm0A_



not modelled 10.0 12
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-mannosidase,alpha-mannosidase,alpha-mannosidase;
PDBTitle: structure of the s. cerevisiae alpha-mannosidase 1
78c5dxlA_



not modelled 9.8 28
PDB header:hydrolase
Chain: A: PDB Molecule:trehalose-6-phosphate phosphatase;
PDBTitle: structure of aspergillus fumigatus trehalose-6-phosphate phosphatase2 crystal form 1
79c4eb5B_



not modelled 9.8 8
PDB header:transferase/metal binding protein
Chain: B: PDB Molecule:probable cysteine desulfurase 2;
PDBTitle: a. fulgidus iscs-iscu complex structure
80d2f8ja1



not modelled 9.8 5
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
81c3ezsB_



not modelled 9.7 8
PDB header:transferase
Chain: B: PDB Molecule:aminotransferase aspb;
PDBTitle: crystal structure of aminotransferase aspb (np_207418.1) from2 helicobacter pylori 26695 at 2.19 a resolution
82c4w91C_



not modelled 9.6 8
PDB header:transferase
Chain: C: PDB Molecule:aminotransferase;
PDBTitle: crystal structure of a cysteine desulfurase sufs from brucella suis2 bound to plp
83c2z9fC_



not modelled 9.5 28
PDB header:biosynthetic protein
Chain: C: PDB Molecule:cellulose synthase operon protein d;
PDBTitle: crystal structure of axcesd protein from acetobacter xylinum
84c4r2nA_



not modelled 9.5 9
PDB header:transferase
Chain: A: PDB Molecule:putative phenylalanine aminotransferase;
PDBTitle: crystal structure of rv3772 in complex with its substrate
85c2qycA_



not modelled 9.4 0
PDB header:unknown function
Chain: A: PDB Molecule:ferredoxin-like protein;
PDBTitle: crystal structure of a dimeric ferredoxin-like protein (bb1511) from2 bordetella bronchiseptica rb50 at 1.90 a resolution
86d2bp3a1



not modelled 9.3 16
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
87c4a4fA_



not modelled 9.2 20
PDB header:rna binding protein
Chain: A: PDB Molecule:survival of motor neuron-related-splicing factor 30;
PDBTitle: solution structure of spf30 tudor domain in complex with symmetrically2 dimethylated arginine
88c3islA_



not modelled 9.2 19
PDB header:transferase
Chain: A: PDB Molecule:purine catabolism protein pucg;
PDBTitle: crystal structure of ureidoglycine-glyoxylate aminotransferase (pucg)2 from bacillus subtilis
89c3wy7D_



not modelled 9.1 26
PDB header:transferase
Chain: D: PDB Molecule:8-amino-7-oxononanoate synthase;
PDBTitle: crystal structure of mycobacterium smegmatis 7-keto-8-aminopelargonic2 acid (kapa) synthase biof
90c4ps2A_



not modelled 9.1 30
PDB header:contractile protein
Chain: A: PDB Molecule:putative type vi secretion protein;
PDBTitle: structure of the c-terminal fragment (87-165) of e.coli eaec tssb2 molecule
91c4chmB_



not modelled 9.0 38
PDB header:cell cycle
Chain: B: PDB Molecule:imc sub-compartment protein isp1;
PDBTitle: structure of inner membrane complex (imc) sub-compartment protein 12 (isp1) from toxoplasma gondii
92d1irza_



not modelled 9.0 29
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:GARP response regulators
93c5zsqA_



not modelled 8.9 11
PDB header:biosynthetic protein
Chain: A: PDB Molecule:cysteine desulfurase;
PDBTitle: nifs from hydrogenimonas thermophila, soaked with l-cysteine for 4 min
94d1j2ra_



not modelled 8.8 23
Fold:Isochorismatase-like hydrolases
Superfamily:Isochorismatase-like hydrolases
Family:Isochorismatase-like hydrolases
95c4iw7A_



not modelled 8.7 4
PDB header:transferase
Chain: A: PDB Molecule:8-amino-7-oxononanoate synthase;
PDBTitle: crystal structure of 8-amino-7-oxononanoate synthase (biof) from2 francisella tularensis.
96c3nuwC_



not modelled 8.6 60
PDB header:transferase
Chain: C: PDB Molecule:2-oxo-3-deoxygalactonate kinase;
PDBTitle: crystal structure of 2-oxo-3-deoxygalactonate kinase from klebsiella2 pneumoniae
97c4ixoB_



not modelled 8.5 17
PDB header:protein binding
Chain: B: PDB Molecule:nifs-like protein;
PDBTitle: x-ray structure of nifs-like protein from rickettsia africae esf-5
98d2ch1a1



not modelled 8.4 19
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
99c4b9aA_



not modelled 8.3 33
PDB header:hydrolase
Chain: A: PDB Molecule:probable epoxide hydrolase;
PDBTitle: structure of a putative epoxide hydrolase from pseudomonas2 aeruginosa.

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