Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3820c_(papA2)_4284597_4286003
DateFri Aug 9 18:20:53 BST 2019
Unique Job ID057b3af3ac4dd240
SequenceVFSITTLRDW ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:48.558 Y:69.408 Z:69.387
Model (left) based on template c6aefB_
Top template information
PDB header:transferase
Chain: B: PDB Molecule:polyketide synthase associated protein papa2;
PDBTitle: papa2 acyl transferase
Confidence and coverage
Confidence:100.0% Coverage: 98%
458 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6aefB_



100.0 100
PDB header:transferase
Chain: B: PDB Molecule:polyketide synthase associated protein papa2;
PDBTitle: papa2 acyl transferase
2c6n8eA_



100.0 10
PDB header:hydrolase
Chain: A: PDB Molecule:holo-obif1;
PDBTitle: crystal structure of holo-obif1, a five domain nonribosomal peptide2 synthetase from burkholderia diffusa
3c4zxiA_



100.0 11
PDB header:biosynthetic protein
Chain: A: PDB Molecule:tyrocidine synthetase 3;
PDBTitle: crystal structure of holo-ab3403 a four domain nonribosomal peptide2 synthetase bound to amp and glycine
4c5u89A_



100.0 12
PDB header:hydrolase/inhibitor
Chain: A: PDB Molecule:amino acid adenylation domain protein;
PDBTitle: crystal structure of a cross-module fragment from the dimodular nrps2 dhbf
5c2vsqA_



100.0 13
PDB header:ligase
Chain: A: PDB Molecule:surfactin synthetase subunit 3;
PDBTitle: structure of surfactin a synthetase c (srfa-c), a nonribosomal peptide2 synthetase termination module
6c6p1jA_



100.0 13
PDB header:biosynthetic protein
Chain: A: PDB Molecule:txo2;
PDBTitle: the structure of condensation and adenylation domains of teixobactin-2 producing nonribosomal peptide synthetase txo2 serine module
7c2jgpA_



100.0 13
PDB header:ligase
Chain: A: PDB Molecule:tyrocidine synthetase 3;
PDBTitle: structure of the tycc5-6 pcp-c bidomain of the tyrocidine synthetase2 tycc
8c5t81A_



100.0 12
PDB header:biosynthetic protein
Chain: A: PDB Molecule:epob;
PDBTitle: rhombohedral crystal form of the epob nrps cyclization-docking2 bidomain from sorangium cellulosum
9c4zxjA_



100.0 13
PDB header:biosynthetic protein
Chain: A: PDB Molecule:enterobactin synthase component f;
PDBTitle: crystal structure of holo-entf a nonribosomal peptide synthetase in2 the thioester-forming conformation
10c4tx3B_



100.0 14
PDB header:oxidoreductase
Chain: B: PDB Molecule:peptide synthetase, module 7;
PDBTitle: complex of the x-domain and oxyb from teicoplanin biosynthesis
11c6m7lB_



100.0 13
PDB header:biosynthetic protein
Chain: B: PDB Molecule:putative non-ribosomal peptide synthetase;
PDBTitle: complex of oxya with the x-domain from gpa biosynthesis
12c5ja2A_



100.0 14
PDB header:ligase
Chain: A: PDB Molecule:enterobactin synthase component f;
PDBTitle: entf, a terminal nonribosomal peptide synthetase module bound to the2 non-native mbth-like protein pa2412
13c2xhgA_



100.0 12
PDB header:isomerase
Chain: A: PDB Molecule:tyrocidine synthetase a;
PDBTitle: crystal structure of the epimerization domain from the initiation2 module of tyrocidine biosynthesis
14c5m6pB_



100.0 10
PDB header:isomerase
Chain: B: PDB Molecule:tyrocidine synthase 2;
PDBTitle: crystal structure of the epimerization domain from module 3 of2 tyrocidine synthetase b, tycb3(e)
15c4znmB_



100.0 13
PDB header:ligase
Chain: B: PDB Molecule:c-domain type ii peptide synthetase;
PDBTitle: crystal structure of sgcc5 protein from streptomyces globisporus (apo2 form)
16c6ozvA_



100.0 14
PDB header:biosynthetic protein
Chain: A: PDB Molecule:txo1;
PDBTitle: the structure of condensation and adenylation domains of teixobactin-2 producing nonribosomal peptide synthetase txo1 serine module in3 complex with amp
17c6cgoB_



100.0 17
PDB header:biosynthetic protein
Chain: B: PDB Molecule:condensation domain protein;
PDBTitle: molecular basis for condensation domain-mediated chain release from2 the enacyloxin polyketide synthase
18c6ad3A_



100.0 14
PDB header:biosynthetic protein
Chain: A: PDB Molecule:lovastatin nonaketide synthase moka;
PDBTitle: structural characterization of the condensation domain from monacolin2 k polyketide synthase moka
19c5t3eA_



100.0 11
PDB header:ligase
Chain: A: PDB Molecule:bacillamide synthetase heterocyclization domain;
PDBTitle: crystal structure of a nonribosomal peptide synthetase2 heterocyclization domain.
20c4jn3B_



100.0 12
PDB header:biosynthetic protein
Chain: B: PDB Molecule:cda peptide synthetase i;
PDBTitle: crystal structures of the first condensation domain of the cda2 synthetase
21c5dijA_



not modelled 100.0 12
PDB header:unknown function
Chain: A: PDB Molecule:tqaa;
PDBTitle: the crystal structure of ct
22c1l5aA_



not modelled 100.0 9
PDB header:biosynthetic protein
Chain: A: PDB Molecule:amide synthase;
PDBTitle: crystal structure of vibh, an nrps condensation enzyme
23c4hvmC_



not modelled 100.0 12
PDB header:biosynthetic protein
Chain: C: PDB Molecule:tlmii;
PDBTitle: crystal structure of tallysomycin biosynthesis protein tlmii
24c3fotA_



not modelled 100.0 10
PDB header:transferase
Chain: A: PDB Molecule:15-o-acetyltransferase;
PDBTitle: structural and functional characterization of tri3 trichothecene 15-o-2 acetyltransferase from fusarium sporotrichioides
25c1q9jA_



not modelled 100.0 13
PDB header:ligase
Chain: A: PDB Molecule:polyketide synthase associated protein 5;
PDBTitle: structure of polyketide synthase associated protein 5 from2 mycobacterium tuberculosis
26c6chjB_



not modelled 100.0 9
PDB header:transferase
Chain: B: PDB Molecule:diacylglycerol o-acyltransferase;
PDBTitle: wax ester synthase/diacylglycerol acyltransferase from marinobacter2 aquaeolei vt8
27d1l5aa2



not modelled 100.0 8
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:NRPS condensation domain (amide synthase)
28d1l5aa1



not modelled 100.0 12
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:NRPS condensation domain (amide synthase)
29c6dd2A_



not modelled 100.0 11
PDB header:transferase
Chain: A: PDB Molecule:probable hydroxycinnamoyl transferase;
PDBTitle: crystal structure of selaginella moellendorffii hct
30c4g0bA_



not modelled 99.9 10
PDB header:transferase
Chain: A: PDB Molecule:hydroxycinnamoyl-coa shikimate/quinate
PDBTitle: structure of native hct from coffea canephora
31d1q9ja1



not modelled 99.9 17
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:NRPS condensation domain (amide synthase)
32d1q9ja2



not modelled 99.9 10
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:NRPS condensation domain (amide synthase)
33c2e1uA_



not modelled 99.9 10
PDB header:transferase
Chain: A: PDB Molecule:acyl transferase;
PDBTitle: crystal structure of dendranthema morifolium dmat
34c2bghA_



not modelled 99.8 12
PDB header:transferase
Chain: A: PDB Molecule:vinorine synthase;
PDBTitle: crystal structure of vinorine synthase
35c6eqoB_



not modelled 99.7 9
PDB header:oxidoreductase
Chain: B: PDB Molecule:acetyl-coenzyme a synthetase;
PDBTitle: tri-functional propionyl-coa synthase of erythrobacter sp. nap1 with2 bound nadp+ and phosphomethylphosphonic acid adenylate ester
36c2xr7A_



not modelled 99.6 8
PDB header:transferase
Chain: A: PDB Molecule:malonyltransferase;
PDBTitle: crystal structure of nicotiana tabacum malonyltransferase (ntmat1)2 complexed with malonyl-coa
37c5es8A_



not modelled 99.5 6
PDB header:ligase
Chain: A: PDB Molecule:linear gramicidin synthetase subunit a;
PDBTitle: crystal structure of the initiation module of lgra in the thiolation2 state
38c3b2sA_



not modelled 99.3 9
PDB header:transferase
Chain: A: PDB Molecule:trichothecene 3-o-acetyltransferase;
PDBTitle: crystal structure of f. graminearum tri101 complexed with coenzyme a2 and deoxynivalenol
39c4ke4A_



not modelled 99.3 10
PDB header:transferase
Chain: A: PDB Molecule:hydroxycinnamoyl-coa:shikimate hydroxycinnamoyl
PDBTitle: elucidation of the structure and reaction mechanism of sorghum bicolor2 hydroxycinnamoyltransferase and its structural relationship to other3 coa-dependent transferases and synthases
40c2zbaD_



not modelled 99.0 7
PDB header:transferase
Chain: D: PDB Molecule:trichothecene 3-o-acetyltransferase;
PDBTitle: crystal structure of f. sporotrichioides tri101 complexed with2 coenzyme a and t-2
41c2i9dC_



not modelled 90.5 9
PDB header:transferase
Chain: C: PDB Molecule:chloramphenicol acetyltransferase;
PDBTitle: chloramphenicol acetyltransferase
42d1b5sa_



not modelled 78.7 14
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:CAT-like
43d1nija2



not modelled 59.0 10
Fold:Hypothetical protein YjiA, C-terminal domain
Superfamily:Hypothetical protein YjiA, C-terminal domain
Family:Hypothetical protein YjiA, C-terminal domain
44d1scza_



not modelled 56.5 15
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:CAT-like
45d1q23a_



not modelled 49.5 8
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:CAT-like
46d3claa_



not modelled 39.5 8
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:CAT-like
47c6h60A_



not modelled 36.9 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyruvate dehydrogenase protein x component, mitochondrial;
PDBTitle: pseudo-atomic structural model of the e3bp component of the human2 pyruvate dehydrogenase multienzyme complex
48c5wmmA_



not modelled 33.5 12
PDB header:biosynthetic protein
Chain: A: PDB Molecule:nrps;
PDBTitle: crystal structure of an adenylation domain interrupted by a2 methylation domain (ama4) from nonribosomal peptide synthetase tios
49c1vs3B_



not modelled 24.0 25
PDB header:isomerase
Chain: B: PDB Molecule:trna pseudouridine synthase a;
PDBTitle: crystal structure of the trna pseudouridine synthase trua from thermus2 thermophilus hb8
50c3kk4B_



not modelled 20.9 10
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein bp1543;
PDBTitle: uncharacterized protein bp1543 from bordetella pertussis tohama i
51d1dj0a_



not modelled 14.8 17
Fold:Pseudouridine synthase
Superfamily:Pseudouridine synthase
Family:Pseudouridine synthase I TruA
52c5msvB_



not modelled 14.8 11
PDB header:oxidoreductase
Chain: B: PDB Molecule:thioester reductase domain-containing protein;
PDBTitle: structure of the phosphopantetheine modified pcp-r didomain of2 carboxylic acid reductase (car) in complex with nadp
53c5ifiA_



not modelled 12.8 13
PDB header:ligase
Chain: A: PDB Molecule:acetyl-coenzyme a synthetase;
PDBTitle: crystal structure of acetyl-coa synthetase in complex with adenosine-2 5'-propylphosphate from cryptococcus neoformans h99
54c5hypB_



not modelled 12.3 22
PDB header:immune system
Chain: B: PDB Molecule:m28 protein;
PDBTitle: structure of human c4b-binding protein alpha cain ccp domains 1 and 22 in complex with the hypervariable region of group a streptococcus m283 protein
55d1dpba_



not modelled 10.9 7
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:CAT-like
56d2bm0a4



not modelled 9.6 7
Fold:Ferredoxin-like
Superfamily:EF-G C-terminal domain-like
Family:EF-G/eEF-2 domains III and V
57c3l60A_



not modelled 9.3 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:branched-chain alpha-keto acid dehydrogenase;
PDBTitle: crystal structure of branched-chain alpha-keto acid dehydrogenase2 subunit e2 from mycobacterium tuberculosis
58c1nijA_



not modelled 9.2 7
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein yjia;
PDBTitle: yjia protein
59d2dy1a4



not modelled 8.6 11
Fold:Ferredoxin-like
Superfamily:EF-G C-terminal domain-like
Family:EF-G/eEF-2 domains III and V
60c6h6pA_



not modelled 8.5 12
PDB header:lipid binding protein
Chain: A: PDB Molecule:ubiquinone biosynthesis protein ubij;
PDBTitle: ubij-scp2 ubiquinone synthesis protein
61d1u8sa2



not modelled 8.5 13
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:Glycine cleavage system transcriptional repressor
62c4q6rB_



not modelled 8.1 2
PDB header:lyase/lyase inhibitor
Chain: B: PDB Molecule:sphingosine-1-phosphate lyase 1;
PDBTitle: crystal structure of human sphingosine-1-phosphate lyase in complex2 with inhibitor 6-[(2r)-4-(4-benzyl-7-chlorophthalazin-1-yl)-2-3 methylpiperazin-1-yl]pyridine-3-carbonitrile
63c1o7dC_



not modelled 7.7 33
PDB header:hydrolase
Chain: C: PDB Molecule:lysosomal alpha-mannosidase;
PDBTitle: the structure of the bovine lysosomal a-mannosidase suggests a novel2 mechanism for low ph activation
64d1qnaa2



not modelled 7.6 8
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
65d2h1ta1



not modelled 7.5 44
Fold:Spiral beta-roll
Superfamily:PA1994-like
Family:PA1994-like
66c5ti8A_



not modelled 7.5 10
PDB header:transferase
Chain: A: PDB Molecule:aminotransferase;
PDBTitle: crystal structure of an aspartate aminotransferase from pseudomonas
67d1k3ea_



not modelled 7.5 10
Fold:Secretion chaperone-like
Superfamily:Type III secretory system chaperone-like
Family:Type III secretory system chaperone
68c6io1B_



not modelled 7.3 10
PDB header:transferase
Chain: B: PDB Molecule:aminotransferase, class iii;
PDBTitle: crystal structure of a novel thermostable (s)-enantioselective omega-2 transaminase from thermomicrobium roseum
69c2p0yA_



not modelled 7.3 5
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein lp_0780;
PDBTitle: crystal structure of q88yi3_lacpl from lactobacillus plantarum.2 northeast structural genomics consortium target lpr6
70c6noyB_



not modelled 7.0 7
PDB header:structural protein
Chain: B: PDB Molecule:maintenance of carboxysome positioning b protein, mcsb;
PDBTitle: structure of cyanothece mcdb
71c4fxeB_



not modelled 6.7 15
PDB header:toxin/toxin inhibitor
Chain: B: PDB Molecule:antitoxin relb;
PDBTitle: crystal structure of the intact e. coli relbe toxin-antitoxin complex
72d1zh2a1



not modelled 6.7 29
Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
73c2k5jB_



not modelled 6.4 3
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein yiif;
PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1
74c2k29A_



not modelled 6.3 15
PDB header:transcription
Chain: A: PDB Molecule:antitoxin relb;
PDBTitle: structure of the dbd domain of e. coli antitoxin relb
75c1u8sB_



not modelled 6.3 13
PDB header:transcription
Chain: B: PDB Molecule:glycine cleavage system transcriptional
PDBTitle: crystal structure of putative glycine cleavage system2 transcriptional repressor
76d1p94a_



not modelled 6.2 21
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
77c3b8kA_



not modelled 6.1 11
PDB header:transferase
Chain: A: PDB Molecule:dihydrolipoyllysine-residue acetyltransferase;
PDBTitle: structure of the truncated human dihydrolipoyl acetyltransferase (e2)
78c3n0vD_



not modelled 5.9 3
PDB header:hydrolase
Chain: D: PDB Molecule:formyltetrahydrofolate deformylase;
PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pp_0327)2 from pseudomonas putida kt2440 at 2.25 a resolution
79c2k9iB_



not modelled 5.6 4
PDB header:dna binding protein
Chain: B: PDB Molecule:uncharacterized protein orf56;
PDBTitle: nmr structure of plasmid copy control protein orf56 from sulfolobus2 islandicus
80c3g98B_



not modelled 5.5 14
PDB header:ligase
Chain: B: PDB Molecule:alanyl-trna synthetase;
PDBTitle: crystal structure of the c-ala domain from aquifex aeolicus2 alanyl-trna synthetase
81c2ii4C_



not modelled 5.3 16
PDB header:transferase
Chain: C: PDB Molecule:lipoamide acyltransferase component of branched-chain
PDBTitle: crystal structure of a cubic core of the dihydrolipoamide2 acyltransferase (e2b) component in the branched-chain alpha-ketoacid3 dehydrogenase complex (bckdc), coenzyme a-bound form
82d2cpga_



not modelled 5.3 15
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
83c1ea4K_



not modelled 5.3 15
PDB header:gene regulation/dna
Chain: K: PDB Molecule:transcriptional repressor copg;
PDBTitle: transcriptional repressor copg/22bp dsdna complex
84d1m6sa_



not modelled 5.2 0
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like

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