Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3824c_(papA1)_4291817_4293352
DateFri Aug 9 18:20:53 BST 2019
Unique Job ID55b9a14d53aec4f0
SequenceVRIGPVELSA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:48.558 Y:69.299 Z:69.620
Model (left) based on template c6aefB_
Top template information
PDB header:transferase
Chain: B: PDB Molecule:polyketide synthase associated protein papa2;
PDBTitle: papa2 acyl transferase
Confidence and coverage
Confidence:100.0% Coverage: 89%
455 residues ( 89% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
506 residues ( 99%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6aefB_



100.0 51
PDB header:transferase
Chain: B: PDB Molecule:polyketide synthase associated protein papa2;
PDBTitle: papa2 acyl transferase
2c6n8eA_



100.0 12
PDB header:hydrolase
Chain: A: PDB Molecule:holo-obif1;
PDBTitle: crystal structure of holo-obif1, a five domain nonribosomal peptide2 synthetase from burkholderia diffusa
3c2vsqA_



100.0 15
PDB header:ligase
Chain: A: PDB Molecule:surfactin synthetase subunit 3;
PDBTitle: structure of surfactin a synthetase c (srfa-c), a nonribosomal peptide2 synthetase termination module
4c6p1jA_



100.0 17
PDB header:biosynthetic protein
Chain: A: PDB Molecule:txo2;
PDBTitle: the structure of condensation and adenylation domains of teixobactin-2 producing nonribosomal peptide synthetase txo2 serine module
5c5u89A_



100.0 15
PDB header:hydrolase/inhibitor
Chain: A: PDB Molecule:amino acid adenylation domain protein;
PDBTitle: crystal structure of a cross-module fragment from the dimodular nrps2 dhbf
6c4zxiA_



100.0 13
PDB header:biosynthetic protein
Chain: A: PDB Molecule:tyrocidine synthetase 3;
PDBTitle: crystal structure of holo-ab3403 a four domain nonribosomal peptide2 synthetase bound to amp and glycine
7c5ja2A_



100.0 13
PDB header:ligase
Chain: A: PDB Molecule:enterobactin synthase component f;
PDBTitle: entf, a terminal nonribosomal peptide synthetase module bound to the2 non-native mbth-like protein pa2412
8c4zxjA_



100.0 13
PDB header:biosynthetic protein
Chain: A: PDB Molecule:enterobactin synthase component f;
PDBTitle: crystal structure of holo-entf a nonribosomal peptide synthetase in2 the thioester-forming conformation
9c6ozvA_



100.0 15
PDB header:biosynthetic protein
Chain: A: PDB Molecule:txo1;
PDBTitle: the structure of condensation and adenylation domains of teixobactin-2 producing nonribosomal peptide synthetase txo1 serine module in3 complex with amp
10c4tx3B_



100.0 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:peptide synthetase, module 7;
PDBTitle: complex of the x-domain and oxyb from teicoplanin biosynthesis
11c6m7lB_



100.0 14
PDB header:biosynthetic protein
Chain: B: PDB Molecule:putative non-ribosomal peptide synthetase;
PDBTitle: complex of oxya with the x-domain from gpa biosynthesis
12c5t81A_



100.0 14
PDB header:biosynthetic protein
Chain: A: PDB Molecule:epob;
PDBTitle: rhombohedral crystal form of the epob nrps cyclization-docking2 bidomain from sorangium cellulosum
13c2jgpA_



100.0 16
PDB header:ligase
Chain: A: PDB Molecule:tyrocidine synthetase 3;
PDBTitle: structure of the tycc5-6 pcp-c bidomain of the tyrocidine synthetase2 tycc
14c6cgoB_



100.0 14
PDB header:biosynthetic protein
Chain: B: PDB Molecule:condensation domain protein;
PDBTitle: molecular basis for condensation domain-mediated chain release from2 the enacyloxin polyketide synthase
15c4jn3B_



100.0 14
PDB header:biosynthetic protein
Chain: B: PDB Molecule:cda peptide synthetase i;
PDBTitle: crystal structures of the first condensation domain of the cda2 synthetase
16c2xhgA_



100.0 13
PDB header:isomerase
Chain: A: PDB Molecule:tyrocidine synthetase a;
PDBTitle: crystal structure of the epimerization domain from the initiation2 module of tyrocidine biosynthesis
17c4znmB_



100.0 16
PDB header:ligase
Chain: B: PDB Molecule:c-domain type ii peptide synthetase;
PDBTitle: crystal structure of sgcc5 protein from streptomyces globisporus (apo2 form)
18c5t3eA_



100.0 10
PDB header:ligase
Chain: A: PDB Molecule:bacillamide synthetase heterocyclization domain;
PDBTitle: crystal structure of a nonribosomal peptide synthetase2 heterocyclization domain.
19c6ad3A_



100.0 14
PDB header:biosynthetic protein
Chain: A: PDB Molecule:lovastatin nonaketide synthase moka;
PDBTitle: structural characterization of the condensation domain from monacolin2 k polyketide synthase moka
20c5m6pB_



100.0 13
PDB header:isomerase
Chain: B: PDB Molecule:tyrocidine synthase 2;
PDBTitle: crystal structure of the epimerization domain from module 3 of2 tyrocidine synthetase b, tycb3(e)
21c1l5aA_



not modelled 100.0 9
PDB header:biosynthetic protein
Chain: A: PDB Molecule:amide synthase;
PDBTitle: crystal structure of vibh, an nrps condensation enzyme
22c5dijA_



not modelled 100.0 11
PDB header:unknown function
Chain: A: PDB Molecule:tqaa;
PDBTitle: the crystal structure of ct
23c4hvmC_



not modelled 100.0 14
PDB header:biosynthetic protein
Chain: C: PDB Molecule:tlmii;
PDBTitle: crystal structure of tallysomycin biosynthesis protein tlmii
24c3fotA_



not modelled 100.0 11
PDB header:transferase
Chain: A: PDB Molecule:15-o-acetyltransferase;
PDBTitle: structural and functional characterization of tri3 trichothecene 15-o-2 acetyltransferase from fusarium sporotrichioides
25c1q9jA_



not modelled 100.0 15
PDB header:ligase
Chain: A: PDB Molecule:polyketide synthase associated protein 5;
PDBTitle: structure of polyketide synthase associated protein 5 from2 mycobacterium tuberculosis
26c6chjB_



not modelled 100.0 9
PDB header:transferase
Chain: B: PDB Molecule:diacylglycerol o-acyltransferase;
PDBTitle: wax ester synthase/diacylglycerol acyltransferase from marinobacter2 aquaeolei vt8
27d1l5aa2



not modelled 100.0 7
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:NRPS condensation domain (amide synthase)
28d1l5aa1



not modelled 100.0 12
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:NRPS condensation domain (amide synthase)
29c6dd2A_



not modelled 100.0 11
PDB header:transferase
Chain: A: PDB Molecule:probable hydroxycinnamoyl transferase;
PDBTitle: crystal structure of selaginella moellendorffii hct
30d1q9ja1



not modelled 99.9 17
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:NRPS condensation domain (amide synthase)
31d1q9ja2



not modelled 99.9 10
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:NRPS condensation domain (amide synthase)
32c4g0bA_



not modelled 99.9 10
PDB header:transferase
Chain: A: PDB Molecule:hydroxycinnamoyl-coa shikimate/quinate
PDBTitle: structure of native hct from coffea canephora
33c2e1uA_



not modelled 99.8 9
PDB header:transferase
Chain: A: PDB Molecule:acyl transferase;
PDBTitle: crystal structure of dendranthema morifolium dmat
34c6eqoB_



not modelled 99.8 8
PDB header:oxidoreductase
Chain: B: PDB Molecule:acetyl-coenzyme a synthetase;
PDBTitle: tri-functional propionyl-coa synthase of erythrobacter sp. nap1 with2 bound nadp+ and phosphomethylphosphonic acid adenylate ester
35c5es8A_



not modelled 99.8 9
PDB header:ligase
Chain: A: PDB Molecule:linear gramicidin synthetase subunit a;
PDBTitle: crystal structure of the initiation module of lgra in the thiolation2 state
36c2bghA_



not modelled 99.8 12
PDB header:transferase
Chain: A: PDB Molecule:vinorine synthase;
PDBTitle: crystal structure of vinorine synthase
37c2xr7A_



not modelled 99.6 8
PDB header:transferase
Chain: A: PDB Molecule:malonyltransferase;
PDBTitle: crystal structure of nicotiana tabacum malonyltransferase (ntmat1)2 complexed with malonyl-coa
38c3b2sA_



not modelled 99.1 9
PDB header:transferase
Chain: A: PDB Molecule:trichothecene 3-o-acetyltransferase;
PDBTitle: crystal structure of f. graminearum tri101 complexed with coenzyme a2 and deoxynivalenol
39c4ke4A_



not modelled 98.8 12
PDB header:transferase
Chain: A: PDB Molecule:hydroxycinnamoyl-coa:shikimate hydroxycinnamoyl
PDBTitle: elucidation of the structure and reaction mechanism of sorghum bicolor2 hydroxycinnamoyltransferase and its structural relationship to other3 coa-dependent transferases and synthases
40c2zbaD_



not modelled 98.3 8
PDB header:transferase
Chain: D: PDB Molecule:trichothecene 3-o-acetyltransferase;
PDBTitle: crystal structure of f. sporotrichioides tri101 complexed with2 coenzyme a and t-2
41c2i9dC_



not modelled 84.7 13
PDB header:transferase
Chain: C: PDB Molecule:chloramphenicol acetyltransferase;
PDBTitle: chloramphenicol acetyltransferase
42c3rqcB_



not modelled 57.8 20
PDB header:transferase
Chain: B: PDB Molecule:probable lipoamide acyltransferase;
PDBTitle: crystal structure of the catalytic core of the 2-oxoacid dehydrogenase2 multienzyme complex from thermoplasma acidophilum
43d1nija2



not modelled 49.3 19
Fold:Hypothetical protein YjiA, C-terminal domain
Superfamily:Hypothetical protein YjiA, C-terminal domain
Family:Hypothetical protein YjiA, C-terminal domain
44d1scza_



not modelled 43.9 22
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:CAT-like
45c3l60A_



not modelled 36.2 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:branched-chain alpha-keto acid dehydrogenase;
PDBTitle: crystal structure of branched-chain alpha-keto acid dehydrogenase2 subunit e2 from mycobacterium tuberculosis
46c3b8kA_



not modelled 28.3 11
PDB header:transferase
Chain: A: PDB Molecule:dihydrolipoyllysine-residue acetyltransferase;
PDBTitle: structure of the truncated human dihydrolipoyl acetyltransferase (e2)
47c1vs3B_



not modelled 25.7 33
PDB header:isomerase
Chain: B: PDB Molecule:trna pseudouridine synthase a;
PDBTitle: crystal structure of the trna pseudouridine synthase trua from thermus2 thermophilus hb8
48c4n72B_



not modelled 24.4 12
PDB header:transferase
Chain: B: PDB Molecule:pyruvate dehydrogenase (dihydrolipoyltransacetylase
PDBTitle: catalytic domain from dihydrolipoamide acetyltransferase of pyruvate2 dehydrogenase from escherichia coli
49d1dpba_



not modelled 22.2 9
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:CAT-like
50d1q23a_



not modelled 21.9 10
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:CAT-like
51d1b5sa_



not modelled 20.6 13
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:CAT-like
52d1dj0a_



not modelled 14.1 17
Fold:Pseudouridine synthase
Superfamily:Pseudouridine synthase
Family:Pseudouridine synthase I TruA
53c5hypB_



not modelled 13.6 22
PDB header:immune system
Chain: B: PDB Molecule:m28 protein;
PDBTitle: structure of human c4b-binding protein alpha cain ccp domains 1 and 22 in complex with the hypervariable region of group a streptococcus m283 protein
54c5wmmA_



not modelled 13.0 9
PDB header:biosynthetic protein
Chain: A: PDB Molecule:nrps;
PDBTitle: crystal structure of an adenylation domain interrupted by a2 methylation domain (ama4) from nonribosomal peptide synthetase tios
55c2ii4C_



not modelled 11.4 25
PDB header:transferase
Chain: C: PDB Molecule:lipoamide acyltransferase component of branched-chain
PDBTitle: crystal structure of a cubic core of the dihydrolipoamide2 acyltransferase (e2b) component in the branched-chain alpha-ketoacid3 dehydrogenase complex (bckdc), coenzyme a-bound form
56c4gr5B_



not modelled 9.4 22
PDB header:ligase
Chain: B: PDB Molecule:non-ribosomal peptide synthetase;
PDBTitle: crystal structure of slgn1deltaasub in complex with ampcpp
57c1nijA_



not modelled 8.4 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein yjia;
PDBTitle: yjia protein
58d1g4ma1



not modelled 8.1 19
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Arrestin/Vps26-like
59d2h1ta1



not modelled 8.0 33
Fold:Spiral beta-roll
Superfamily:PA1994-like
Family:PA1994-like
60c3maeA_



not modelled 7.8 14
PDB header:transferase
Chain: A: PDB Molecule:2-oxoisovalerate dehydrogenase e2 component,
PDBTitle: crystal structure of probable dihydrolipoamide acetyltransferase from2 listeria monocytogenes 4b f2365
61c2k5jB_



not modelled 7.2 3
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein yiif;
PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1
62c2p0yA_



not modelled 7.1 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein lp_0780;
PDBTitle: crystal structure of q88yi3_lacpl from lactobacillus plantarum.2 northeast structural genomics consortium target lpr6
63c1o7dC_



not modelled 6.8 28
PDB header:hydrolase
Chain: C: PDB Molecule:lysosomal alpha-mannosidase;
PDBTitle: the structure of the bovine lysosomal a-mannosidase suggests a novel2 mechanism for low ph activation
64d1zh2a1



not modelled 6.1 19
Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
65d3claa_



not modelled 5.7 15
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:CAT-like
66d1p94a_



not modelled 5.6 20
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
67c6bk9A_



not modelled 5.5 8
PDB header:signaling protein
Chain: A: PDB Molecule:visual arrestin;
PDBTitle: crystal structure of squid arrestin
68d1u8sa2



not modelled 5.4 19
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:Glycine cleavage system transcriptional repressor

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below