Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3831_(-)_4305935_4306417
DateFri Aug 9 18:20:54 BST 2019
Unique Job ID605419fa27242b88
SequenceMVSLLVHAAL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:41.064 Y:31.777 Z:19.769
Model (left) based on template c5xvjB_
Top template information
PDB header:gene regulation
Chain: B: PDB Molecule:phd finger protein alfin-like 7;
PDBTitle: crystal structure of al7 pal domain
Confidence and coverage
Confidence: 45.3% Coverage: 21%
34 residues ( 21% of your sequence) have been modelled with 45.3% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5xvjB_
45.3 26
PDB header:gene regulation
Chain: B: PDB Molecule:phd finger protein alfin-like 7;
PDBTitle: crystal structure of al7 pal domain
2c5lnkn_
29.2 55
PDB header:oxidoreductase
Chain: N: PDB Molecule:mitochondrial complex i, nd2 subunit;
PDBTitle: entire ovine respiratory complex i
3c3ug9A_
28.4 15
PDB header:membrane protein
Chain: A: PDB Molecule:archaeal-type opsin 1, archaeal-type opsin 2;
PDBTitle: crystal structure of the closed state of channelrhodopsin
4c4h41B_
27.1 19
PDB header:hydrolase
Chain: B: PDB Molecule:putative alpha-l-fucosidase;
PDBTitle: crystal structure of a putative alpha-l-fucosidase (bt_0435) from2 bacteroides thetaiotaomicron vpi-5482 at 1.80 a resolution
5c1ug9A_
19.6 63
PDB header:hydrolase
Chain: A: PDB Molecule:glucodextranase;
PDBTitle: crystal structure of glucodextranase from arthrobacter globiformis i42
6c2eapA_
16.2 38
PDB header:signaling protein
Chain: A: PDB Molecule:lymphocyte cytosolic protein 2;
PDBTitle: solution structure of the n-terminal sam-domain of human2 lymphocyte cytosolic protein 2
7c4k90A_
15.7 26
PDB header:hydrolase
Chain: A: PDB Molecule:extracellular metalloproteinase mep;
PDBTitle: extracellular metalloproteinase from aspergillus
8d1cdoa1
14.4 16
Fold:GroES-like
Superfamily:GroES-like
Family:Alcohol dehydrogenase-like, N-terminal domain
9c5hr4J_
13.3 12
PDB header:hydrolase/dna
Chain: J: PDB Molecule:mmei;
PDBTitle: structure of type iil restriction-modification enzyme mmei in complex2 with dna has implications for engineering of new specificities
10c2vovA_
13.3 55
PDB header:metal-binding protein
Chain: A: PDB Molecule:surface-associated protein;
PDBTitle: an oxidized tryptophan facilitates copper-binding in2 methylococcus capsulatus secreted protein mope. the3 structure of wild-type mope to 1.35aa
11c2xnxM_
13.1 64
PDB header:cell adhesion
Chain: M: PDB Molecule:m protein;
PDBTitle: bc1 fragment of streptococcal m1 protein in complex with human2 fibrinogen
12c3tixB_
12.6 32
PDB header:gene regulation/protein binding
Chain: B: PDB Molecule:chromo domain-containing protein 1;
PDBTitle: crystal structure of the chp1-tas3 complex core
13c5id3C_
12.6 19
PDB header:transport protein
Chain: C: PDB Molecule:mitochondrial calcium uniporter;
PDBTitle: solution structure of the pore-forming region of c. elegans2 mitochondrial calcium uniporter (mcu)
14c6hu9l_
12.4 42
PDB header:oxidoreductase/electron transport
Chain: L: PDB Molecule:cytochrome b-c1 complex subunit 1, mitochondrial;
PDBTitle: iii2-iv2 mitochondrial respiratory supercomplex from s. cerevisiae
15c6hu9x_
12.0 42
PDB header:oxidoreductase/electron transport
Chain: X: PDB Molecule:
PDBTitle: iii2-iv2 mitochondrial respiratory supercomplex from s. cerevisiae
16d1prta_
11.9 40
Fold:ADP-ribosylation
Superfamily:ADP-ribosylation
Family:ADP-ribosylating toxins
17c6etzA_
10.4 37
PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase;
PDBTitle: cold-adapted beta-d-galactosidase from arthrobacter sp. 32cb
18d1d1ta1
9.4 13
Fold:GroES-like
Superfamily:GroES-like
Family:Alcohol dehydrogenase-like, N-terminal domain
19c2plwA_
9.0 29
PDB header:transferase
Chain: A: PDB Molecule:ribosomal rna methyltransferase, putative;
PDBTitle: crystal structure of a ribosomal rna methyltransferase, putative, from2 plasmodium falciparum (pf13_0052).
20c2otoD_
8.7 64
PDB header:surface active protein, toxin
Chain: D: PDB Molecule:m protein;
PDBTitle: n-terminal fragment of streptococcus pyogenes m1 protein
21d1j7na1
not modelled 8.6 50
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Anthrax toxin lethal factor, N- and C-terminal domains
22c4n48A_
not modelled 8.5 67
PDB header:transferase/rna
Chain: A: PDB Molecule:cap-specific mrna (nucleoside-2'-o-)-methyltransferase 1;
PDBTitle: cap-specific mrna (nucleoside-2'-o-)-methyltransferase 1 protein in2 complex with capped rna fragment
23c6igkB_
not modelled 8.4 56
PDB header:signaling protein/protein binding
Chain: B: PDB Molecule:endothelin-3;
PDBTitle: crystal structure of human etb receptor in complex with endothelin-3
24c3kwvF_
not modelled 8.3 50
PDB header:toxin/protein transport
Chain: F: PDB Molecule:lethal factor;
PDBTitle: structural basis for the unfolding of anthrax lethal factor by2 protective antigen oligomers
25d1w36c3
not modelled 8.2 32
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Exodeoxyribonuclease V beta chain (RecC), C-terminal domain
26c6eznG_
not modelled 8.2 27
PDB header:membrane protein
Chain: G: PDB Molecule:dolichyl-diphosphooligosaccharide--protein
PDBTitle: cryo-em structure of the yeast oligosaccharyltransferase (ost) complex
27c3j4bB_
not modelled 7.5 83
PDB header:viral protein
Chain: B: PDB Molecule:tail tubular protein a;
PDBTitle: structure of t7 gatekeeper protein (gp11)
28c4akaA_
not modelled 7.3 46
PDB header:immune system
Chain: A: PDB Molecule:il-4-inducing protein;
PDBTitle: ipse alpha-1, an ige-binding crystallin
29d1cwva5
not modelled 6.9 35
Fold:C-type lectin-like
Superfamily:C-type lectin-like
Family:Invasin/intimin cell-adhesion fragment, C-terminal domain
30d1h2ba1
not modelled 6.7 13
Fold:GroES-like
Superfamily:GroES-like
Family:Alcohol dehydrogenase-like, N-terminal domain
31c2a3dA_
not modelled 6.7 83
PDB header:three-helix bundle
Chain: A: PDB Molecule:protein (de novo three-helix bundle);
PDBTitle: solution structure of a de novo designed single chain three-2 helix bundle (a3d)
32c4yk2B_
not modelled 6.6 27
PDB header:protein binding
Chain: B: PDB Molecule:bartonella effector protein (bep) substrate of virb t4ss;
PDBTitle: crystal structure of the bid domain of bep9 from bartonella2 clarridgeiae
33c2bn5A_
not modelled 6.6 63
PDB header:nuclear protein
Chain: A: PDB Molecule:psi;
PDBTitle: p-element somatic inhibitor protein complex with u1-70k2 proline-rich peptide
34c5mu4A_
not modelled 6.4 36
PDB header:viral protein
Chain: A: PDB Molecule:tail tubular protein a;
PDBTitle: tail tubular protein a of klebsiella pneumoniae bacteriophage kp32
35d1u3wa1
not modelled 6.4 16
Fold:GroES-like
Superfamily:GroES-like
Family:Alcohol dehydrogenase-like, N-terminal domain
36c2bn6A_
not modelled 6.3 63
PDB header:nuclear protein
Chain: A: PDB Molecule:psi;
PDBTitle: p-element somatic inhibitor protein
37d2outa2
not modelled 5.7 57
Fold:GINS/PriA/YqbF domain
Superfamily:PriA/YqbF domain
Family:YqbF N-terminal domain-like
38c2outA_
not modelled 5.5 57
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:mu-like prophage flumu protein gp35, protein
PDBTitle: solution structure of hi1506, a novel two domain protein2 from haemophilus influenzae
39c5lskP_
not modelled 5.4 67
PDB header:cell cycle
Chain: P: PDB Molecule:centromere protein c;
PDBTitle: crystal structure of the human kinetochore mis12-cenp-c complex
40d1vf5b_
not modelled 5.4 19
Fold:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Superfamily:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Family:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
41c2k3oA_
not modelled 5.2 50
PDB header:structural protein
Chain: A: PDB Molecule:tusp1;
PDBTitle: solution structure of the type 2 repetitive domain (tusp1-2 rp2) of the egg case silk from nephila antipodiana
42c5zihA_
not modelled 5.2 11
PDB header:membrane protein
Chain: A: PDB Molecule:sensory opsin a,chrimson;
PDBTitle: crystal structure of the red light-activated channelrhodopsin2 chrimson.
43c5lo9B_
not modelled 5.1 75
PDB header:oxidoreductase
Chain: B: PDB Molecule:cytochrome c;
PDBTitle: thiosulfate dehydrogenase (tsdba) from marichromatium purpuratum - "as2 isolated" form
44c4rymA_
not modelled 5.0 5
PDB header:membrane protein
Chain: A: PDB Molecule:integral membrane protein;
PDBTitle: crystal structure of bctspo iodo type1 monomer

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below