Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3835_(-)_4309225_4310574
DateFri Aug 9 18:20:54 BST 2019
Unique Job IDfc509db59989699d
SequenceMLDAPEQDPV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:27.727 Y:23.330 Z:33.619
Model (left) based on template c5klcA_
Top template information
PDB header:sugar binding protein
Chain: A: PDB Molecule:carbohydrate binding module e1;
PDBTitle: structure of cbm_e1, a novel carbohydrate-binding module found by2 sugar cane soil metagenome
Confidence and coverage
Confidence: 47.8% Coverage: 9%
42 residues ( 9% of your sequence) have been modelled with 47.8% confidence by the single highest scoring template.
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Warning: 53% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5klcA_
47.8 33
PDB header:sugar binding protein
Chain: A: PDB Molecule:carbohydrate binding module e1;
PDBTitle: structure of cbm_e1, a novel carbohydrate-binding module found by2 sugar cane soil metagenome
2c4nl6C_
28.9 13
PDB header:splicing
Chain: C: PDB Molecule:survival motor neuron protein;
PDBTitle: structure of the full-length form of the protein smn found in healthy2 patients
3c4a1sE_
26.9 44
PDB header:cell cycle
Chain: E: PDB Molecule:re60102p;
PDBTitle: crystallographic structure of the pins:insc complex
4c3lybC_
23.6 23
PDB header:hydrolase
Chain: C: PDB Molecule:putative endoribonuclease;
PDBTitle: structure of putative endoribonuclease(kp1_3112) from klebsiella2 pneumoniae
5c3gjbA_
17.9 9
PDB header:biosynthetic protein
Chain: A: PDB Molecule:cytc3;
PDBTitle: cytc3 with fe(ii) and alpha-ketoglutarate
6c4pmkA_
17.8 30
PDB header:plant protein
Chain: A: PDB Molecule:kiwellin;
PDBTitle: crystal structure of kiwellin
7c2lcdA_
15.6 19
PDB header:transcription
Chain: A: PDB Molecule:at-rich interactive domain-containing protein 4a;
PDBTitle: solution structure of rbbp1 tudor domain
8c5jqyA_
13.7 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:aspartyl/asparaginyl beta-hydroxylase;
PDBTitle: aspartyl/asparaginyl beta-hydroxylase (asph)oxygenase and tpr domains2 in complex with manganese, n-oxalylglycine and factor x substrate3 peptide fragment(39mer-4ser)
9c2momC_
13.6 30
PDB header:membrane protein
Chain: C: PDB Molecule:lysosome-associated membrane glycoprotein 2;
PDBTitle: structural insights of tm domain of lamp-2a in dpc micelles
10c2momB_
12.4 30
PDB header:membrane protein
Chain: B: PDB Molecule:lysosome-associated membrane glycoprotein 2;
PDBTitle: structural insights of tm domain of lamp-2a in dpc micelles
11c4d0kC_
10.3 15
PDB header:gene regulation
Chain: C: PDB Molecule:pab-dependent poly(a)-specific ribonuclease subunit
PDBTitle: complex of chaetomium thermophilum pan2 (wd40-cs1) with pan3 (c-term)
12c4a1aM_
10.3 11
PDB header:ribosome
Chain: M: PDB Molecule:60s ribosomal protein l5;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3.
13d2fsqa1
9.9 36
Fold:LigT-like
Superfamily:LigT-like
Family:Atu0111-like
14d1zxqa2
9.6 50
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
15d1s6la2
9.4 20
Fold:NosL/MerB-like
Superfamily:NosL/MerB-like
Family:MerB-like
16c5iwzA_
9.3 27
PDB header:cell cycle
Chain: A: PDB Molecule:synaptonemal complex protein 2;
PDBTitle: synaptonemal complex protein
17c5ue8B_
9.0 55
PDB header:exocytosis
Chain: B: PDB Molecule:protein unc-13 homolog a;
PDBTitle: the crystal structure of munc13-1 c1c2bmun domain
18c4dzoA_
8.8 17
PDB header:cell cycle
Chain: A: PDB Molecule:mitotic spindle assembly checkpoint protein mad1;
PDBTitle: structure of human mad1 c-terminal domain reveals its involvement in2 kinetochore targeting
19d1wyka_
8.4 19
Fold:Trypsin-like serine proteases
Superfamily:Trypsin-like serine proteases
Family:Viral proteases
20d1e8qa_
8.2 21
Fold:Cellulose docking domain, dockering
Superfamily:Cellulose docking domain, dockering
Family:Cellulose docking domain, dockering
21d1ep5a_
not modelled 8.2 22
Fold:Trypsin-like serine proteases
Superfamily:Trypsin-like serine proteases
Family:Viral proteases
22c3hqxA_
not modelled 8.0 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0345 protein aciad0356;
PDBTitle: crystal structure of protein of unknown function (duf1255,pf06865)2 from acinetobacter sp. adp1
23c1kxfA_
not modelled 7.9 19
PDB header:viral protein
Chain: A: PDB Molecule:sindbis virus capsid protein;
PDBTitle: sindbis virus capsid, (wild-type) residues 1-264, tetragonal crystal2 form (form ii)
24c2yewG_
not modelled 7.7 25
PDB header:virus
Chain: G: PDB Molecule:capsid protein;
PDBTitle: modeling barmah forest virus structural proteins
25c1t0pB_
not modelled 7.7 50
PDB header:immune system
Chain: B: PDB Molecule:intercellular adhesion molecule-3;
PDBTitle: structural basis of icam recognition by integrin alpahlbeta2 revealed2 in the complex structure of binding domains of icam-3 and alphalbeta23 at 1.65 a
26d1vcpa_
not modelled 7.7 25
Fold:Trypsin-like serine proteases
Superfamily:Trypsin-like serine proteases
Family:Viral proteases
27c4f5cF_
not modelled 7.5 20
PDB header:hydrolase/viral protein
Chain: F: PDB Molecule:prcv spike protein;
PDBTitle: crystal structure of the spike receptor binding domain of a porcine2 respiratory coronavirus in complex with the pig aminopeptidase n3 ectodomain
28c2n4pA_
not modelled 7.4 19
PDB header:dna binding protein
Chain: A: PDB Molecule:tar dna-binding protein 43;
PDBTitle: solution structure of the n-terminal domain of tdp-43
29c2q49B_
not modelled 6.7 21
PDB header:oxidoreductase
Chain: B: PDB Molecule:probable n-acetyl-gamma-glutamyl-phosphate reductase;
PDBTitle: ensemble refinement of the protein crystal structure of gene product2 from arabidopsis thaliana at2g19940
30c5mrgA_
not modelled 6.6 19
PDB header:dna binding protein
Chain: A: PDB Molecule:tar dna-binding protein 43;
PDBTitle: solution structure of tdp-43 (residues 1-102)
31c3d2hA_
not modelled 6.5 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:berberine bridge-forming enzyme;
PDBTitle: structure of berberine bridge enzyme from eschscholzia californica,2 monoclinic crystal form
32c2m6oA_
not modelled 6.0 43
PDB header:transcription
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: the actinobacterial transcription factor rbpa binds to the principal2 sigma subunit of rna polymerase
33c5mdxx_
not modelled 5.9 30
PDB header:photosynthesis
Chain: X: PDB Molecule:photosystem ii reaction center protein x;
PDBTitle: cryo-em structure of the psii supercomplex from arabidopsis thaliana
34c5mdxX_
not modelled 5.9 30
PDB header:photosynthesis
Chain: X: PDB Molecule:photosystem ii reaction center protein x;
PDBTitle: cryo-em structure of the psii supercomplex from arabidopsis thaliana
35c6mx7C_
not modelled 5.9 22
PDB header:virus
Chain: C: PDB Molecule:capsid;
PDBTitle: cryoem structure of chimeric eastern equine encephalitis virus:2 genome-binding capsid n-terminal domain
36c3j3bD_
not modelled 5.9 17
PDB header:ribosome
Chain: D: PDB Molecule:60s ribosomal protein l5;
PDBTitle: structure of the human 60s ribosomal proteins
37c2miiA_
not modelled 5.4 21
PDB header:protein binding
Chain: A: PDB Molecule:penicillin-binding protein activator lpob;
PDBTitle: nmr structure of e. coli lpob
38c4c8hC_
not modelled 5.1 23
PDB header:dna replication
Chain: C: PDB Molecule:ctf4;
PDBTitle: crystal structure of the c-terminal region of yeast ctf4,2 selenomethionine protein.
39c6d6vF_
not modelled 5.0 38
PDB header:replication
Chain: F: PDB Molecule:telomerase holoenzyme teb heterotrimer teb3 subunit;
PDBTitle: cryoem structure of tetrahymena telomerase with telomeric dna at 4.82 angstrom resolution
40c3jcux_
not modelled 5.0 35
PDB header:membrane protein
Chain: X: PDB Molecule:photosystem ii reaction center x protein;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below