Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3839_(-)_4312943_4313719
DateSat Aug 10 22:05:02 BST 2019
Unique Job ID77134819dd2f8aab
SequenceMPPLTSLAPT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:67.712 Y:42.791 Z:58.174
Model (left) based on template c5bncB_
Top template information
PDB header:heme binding protein
Chain: B: PDB Molecule:heme binding protein msmeg_6519;
PDBTitle: structure of heme binding protein msmeg_6519 from mycobacterium2 smegmatis
Confidence and coverage
Confidence:100.0% Coverage: 91%
235 residues ( 91% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5bncB_



100.0 18
PDB header:heme binding protein
Chain: B: PDB Molecule:heme binding protein msmeg_6519;
PDBTitle: structure of heme binding protein msmeg_6519 from mycobacterium2 smegmatis
2c4n7rD_



100.0 16
PDB header:oxidoreductase/protein binding
Chain: D: PDB Molecule:genomic dna, chromosome 3, p1 clone: mxl8;
PDBTitle: crystal structure of arabidopsis glutamyl-trna reductase in complex2 with its binding protein
3d2arza1



100.0 17
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
4c3dnhB_



100.0 14
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein atu2129;
PDBTitle: the crystal structure of the protein atu2129 (unknown function) from2 agrobacterium tumefaciens str. c58
5d1xhna1



100.0 17
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
6c3gasA_



99.8 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:heme oxygenase;
PDBTitle: crystal structure of helicobacter pylori heme oxygenase hugz2 in complex with heme
7d1vl7a_



99.5 9
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
8c3tgvD_



99.4 8
PDB header:heme binding protein
Chain: D: PDB Molecule:heme-binding protein hutz;
PDBTitle: crystal structure of hutz,the heme storsge protein from vibrio2 cholerae
9c2iabB_



98.5 22
PDB header:unknown function
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a protein with fmn-binding split barrel fold2 (np_828636.1) from streptomyces avermitilis at 2.00 a resolution
10c3f7eB_



98.5 13
PDB header:unknown function
Chain: B: PDB Molecule:pyridoxamine 5'-phosphate oxidase-related, fmn-
PDBTitle: msmeg_3380 f420 reductase
11c3db0B_



98.2 10
PDB header:oxidoreductase
Chain: B: PDB Molecule:lin2891 protein;
PDBTitle: crystal structure of putative pyridoxamine 5'-phosphate oxidase2 (np_472219.1) from listeria innocua at 2.00 a resolution
12d2fhqa1



98.1 10
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
13c3ec6A_



98.1 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:general stress protein 26;
PDBTitle: crystal structure of the general stress protein 26 from bacillus2 anthracis str. sterne
14c3u34D_



98.0 11
PDB header:protein binding
Chain: D: PDB Molecule:general stress protein;
PDBTitle: crystal structure of the general stress fmn/fad binding protein from2 the phytopathogen xanthomonas citri
15d1rfea_



98.0 8
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
16d1w9aa_



98.0 11
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
17c2re7A_



98.0 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a pyridoxamine 5'-phosphate oxidase related2 protein (psyc_0186) from psychrobacter arcticus 273-4 at 2.50 a3 resolution
18d2i02a1



97.9 12
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
19c3u0iA_



97.9 21
PDB header:unknown function
Chain: A: PDB Molecule:probable fad-binding, putative uncharacterized protein;
PDBTitle: crystal structure of a probable fad-binding, putative uncharacterized2 protein from brucella melitensis
20c4zkyB_



97.9 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:pyridoxamine 5-phosphate oxidase;
PDBTitle: structure of f420 binding protein, msmeg_6526, from mycobacterium2 smegmatis
21c2ig6B_



not modelled 97.8 10
PDB header:oxidoreductase
Chain: B: PDB Molecule:nimc/nima family protein;
PDBTitle: crystal structure of a nimc/nima family protein (ca_c2569) from2 clostridium acetobutylicum at 1.80 a resolution
22c2qeaB_



not modelled 97.8 9
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative general stress protein 26;
PDBTitle: crystal structure of a putative general stress protein 26 (jann_0955)2 from jannaschia sp. ccs1 at 2.46 a resolution
23d2asfa1



not modelled 97.7 13
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
24c3dmbA_



not modelled 97.7 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative general stress protein 26 with a pnp-oxidase like
PDBTitle: crystal structure of a putative general stress family protein2 (xcc2264) from xanthomonas campestris pv. campestris at 2.30 a3 resolution
25c3fkhB_



not modelled 97.6 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative pyridoxamine 5'-phosphate oxidase;
PDBTitle: crystal structure of putative pyridoxamine 5'-phosphate oxidase2 (np_601736.1) from corynebacterium glutamicum atcc 13032 kitasato at3 2.51 a resolution
26d2htia1



not modelled 97.5 13
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
27c2htiA_



not modelled 97.5 13
PDB header:fmn-binding protein
Chain: A: PDB Molecule:bh0577 protein;
PDBTitle: crystal structure of a flavin-nucleotide-binding protein (bh_0577)2 from bacillus halodurans at 2.50 a resolution
28d2hq7a1



not modelled 97.5 9
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
29d2hq9a1



not modelled 97.4 14
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
30c3cp3A_



not modelled 97.4 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of conserved protein of unknown function dip18742 from corynebacterium diphtheriae
31c2hhzA_



not modelled 97.3 9
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyridoxamine 5'-phosphate oxidase-related;
PDBTitle: crystal structure of a pyridoxamine 5'-phosphate oxidase-related2 protein (ssuidraft_2804) from streptococcus suis 89/1591 at 2.00 a3 resolution
32d2fg9a1



not modelled 97.2 15
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
33c6eciQ_



not modelled 97.0 14
PDB header:fad-binding protein
Chain: Q: PDB Molecule:pyridoxamine 5'-phosphate oxidase-related, fmn-binding
PDBTitle: structure of the fad binding protein msmeg_5243 from mycobacterium2 smegmatis
34c2ou5B_



not modelled 96.3 14
PDB header:flavoprotein
Chain: B: PDB Molecule:pyridoxamine 5'-phosphate oxidase-related, fmn-binding;
PDBTitle: crystal structure of a pyridoxamine 5'-phosphate oxidase-related fmn-2 binding protein (jann_0254) from jannaschia sp. ccs1 at 1.60 a3 resolution
35d2fura1



not modelled 96.3 10
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
36d1flma_



not modelled 95.8 12
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
37c2q9kA_



not modelled 95.7 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative oxidoreductase (exig_1997) from2 exiguobacterium sibiricum 255-15 at 1.59 a resolution
38c4ybnB_



not modelled 95.7 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:flavin-nucleotide-binding protein;
PDBTitle: structure of the fad and heme binding protein msmeg_4975 from2 mycobacterium smegmatis
39c1nrgA_



not modelled 95.6 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyridoxine 5'-phosphate oxidase;
PDBTitle: structure and properties of recombinant human pyridoxine-5'-phosphate2 oxidase
40d1nrga_



not modelled 95.6 13
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
41d1t9ma_



not modelled 95.2 16
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
42d1dnla_



not modelled 95.0 13
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
43c5escD_



not modelled 95.0 10
PDB header:oxidoreductase
Chain: D: PDB Molecule:hupz;
PDBTitle: crystal structure of group a streptococcus hupz
44d1ty9a_



not modelled 94.5 12
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
45d2vpaa1



not modelled 93.2 15
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
46c2a2jA_



not modelled 93.2 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyridoxamine 5'-phosphate oxidase;
PDBTitle: crystal structure of a putative pyridoxine 5'-phosphate oxidase2 (rv2607) from mycobacterium tuberculosis
47c2htdB_



not modelled 91.6 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:predicted flavin-nucleotide-binding protein from cog3576
PDBTitle: crystal structure of a putative pyridoxamine 5'-phosphate oxidase2 (ldb0262) from lactobacillus delbrueckii subsp. at 1.60 a resolution
48d2a2ja1



not modelled 89.9 13
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
49c4hmwB_



not modelled 86.0 11
PDB header:oxidoreductase
Chain: B: PDB Molecule:pyridoxamine 5'-phosphate oxidase;
PDBTitle: crystal structure of phzg from burkholderia lata 383
50c6rk0A_



not modelled 73.0 12
PDB header:flavoprotein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: structure of the flavocytochrome anf3 from azotobacter vinelandii
51c2ol5B_



not modelled 58.6 10
PDB header:transcription regulator
Chain: B: PDB Molecule:pai 2 protein;
PDBTitle: crystal structure of a protease synthase and sporulation negative2 regulatory protein pai 2 from bacillus stearothermophilus
52d1ci0a_



not modelled 39.6 10
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
53c3r5wO_



not modelled 36.4 16
PDB header:oxidoreductase
Chain: O: PDB Molecule:deazaflavin-dependent nitroreductase;
PDBTitle: structure of ddn, the deazaflavin-dependent nitroreductase from2 mycobacterium tuberculosis involved in bioreductive activation of pa-3 824, with co-factor f420
54c3r5yC_



not modelled 32.9 16
PDB header:unknown function
Chain: C: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure of a deazaflavin-dependent nitroreductase from nocardia2 farcinica, with co-factor f420
55c2i51B_



not modelled 31.5 15
PDB header:flavoprotein
Chain: B: PDB Molecule:uncharacterized conserved protein of cog5135;
PDBTitle: crystal structure of a pyridoxamine 5'-phosphate oxidase-related, fmn2 binding protein (npun_f5749) from nostoc punctiforme pcc 73102 at3 1.40 a resolution
56d1fx0a1



not modelled 21.5 13
Fold:Left-handed superhelix
Superfamily:C-terminal domain of alpha and beta subunits of F1 ATP synthase
Family:C-terminal domain of alpha and beta subunits of F1 ATP synthase
57d1skyb1



not modelled 20.3 10
Fold:Left-handed superhelix
Superfamily:C-terminal domain of alpha and beta subunits of F1 ATP synthase
Family:C-terminal domain of alpha and beta subunits of F1 ATP synthase
58d2glia1



not modelled 15.6 27
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
59c3r5zB_



not modelled 13.0 14
PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure of a deazaflavin-dependent reductase from nocardia2 farcinica, with co-factor f420
60d2f43a1



not modelled 12.0 27
Fold:Left-handed superhelix
Superfamily:C-terminal domain of alpha and beta subunits of F1 ATP synthase
Family:C-terminal domain of alpha and beta subunits of F1 ATP synthase
61c5c6uA_



not modelled 10.2 28
PDB header:transferase
Chain: A: PDB Molecule:aminotransferase;
PDBTitle: rv3722c aminotransferase from mycobacterium tuberculosis
62c3zmnA_



not modelled 9.5 15
PDB header:viral protein
Chain: A: PDB Molecule:vp17;
PDBTitle: vp17, a capsid protein of bacteriophage p23-77
63d1v86a_



not modelled 8.6 25
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
64c4y9iA_



not modelled 8.5 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:mycobacterium tuberculosis paralogous family 11;
PDBTitle: structure of f420-h2 dependent reductase (fdr-a) msmeg_2027
65c2dzmA_



not modelled 8.4 23
PDB header:structural genomics unknown function
Chain: A: PDB Molecule:fas-associated factor 1;
PDBTitle: solution structure of the ubiquitin-like domain in human2 fas-associated factor 1 (hfaf1)
66d2jdia1



not modelled 7.8 19
Fold:Left-handed superhelix
Superfamily:C-terminal domain of alpha and beta subunits of F1 ATP synthase
Family:C-terminal domain of alpha and beta subunits of F1 ATP synthase
67c2rfeF_



not modelled 7.4 55
PDB header:transferase
Chain: F: PDB Molecule:erbb receptor feedback inhibitor 1;
PDBTitle: crystal structure of the complex between the egfr kinase domain and a2 mig6 peptide
68c2rf9C_



not modelled 7.3 55
PDB header:transferase
Chain: C: PDB Molecule:erbb receptor feedback inhibitor 1;
PDBTitle: crystal structure of the complex between the egfr kinase domain and a2 mig6 peptide
69c2rf9D_



not modelled 7.3 55
PDB header:transferase
Chain: D: PDB Molecule:erbb receptor feedback inhibitor 1;
PDBTitle: crystal structure of the complex between the egfr kinase domain and a2 mig6 peptide
70c4i21D_



not modelled 7.3 55
PDB header:transferase/transferase inhibitor
Chain: D: PDB Molecule:erbb receptor feedback inhibitor 1;
PDBTitle: crystal structure of l858r + t790m egfr kinase domain in complex with2 mig6 peptide
71c2rfeE_



not modelled 7.3 55
PDB header:transferase
Chain: E: PDB Molecule:erbb receptor feedback inhibitor 1;
PDBTitle: crystal structure of the complex between the egfr kinase domain and a2 mig6 peptide
72c2vsfA_



not modelled 7.1 23
PDB header:hydrolase
Chain: A: PDB Molecule:dna repair helicase rad3 related protein;
PDBTitle: structure of xpd from thermoplasma acidophilum
73c5igwA_



not modelled 7.0 17
PDB header:transferase
Chain: A: PDB Molecule:macrolide 2'-phosphotransferase ii;
PDBTitle: macrolide 2'-phosphotransferase type ii - complex with gdp and2 clarithromycin
74c5z6pB_



not modelled 6.8 18
PDB header:hydrolase
Chain: B: PDB Molecule:b-agarase;
PDBTitle: the crystal structure of an agarase, agwh50c
75c5iy8W_



not modelled 6.2 10
PDB header:transcription, transferase/dna
Chain: W: PDB Molecule:tfiih basal transcription factor complex helicase xpd
PDBTitle: human holo-pic in the initial transcribing state
76c4o5oA_



not modelled 6.1 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:3-hydroxyacyl-coa dehydrogenase;
PDBTitle: x-ray crystal structure of a 3-hydroxyacyl-coa dehydrogenase from2 brucella suis
77c3pplB_



not modelled 5.9 21
PDB header:transferase
Chain: B: PDB Molecule:aspartate aminotransferase;
PDBTitle: crystal structure of an aspartate transaminase (ncgl0237, cgl0240)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.25 a3 resolution
78c2q6mA_



not modelled 5.8 17
PDB header:toxin
Chain: A: PDB Molecule:cholix toxin;
PDBTitle: catalytic fragment of cholix toxin from vibrio cholerae in complex2 with the pj34 inhibitor
79c4i21C_



not modelled 5.7 55
PDB header:transferase/transferase inhibitor
Chain: C: PDB Molecule:erbb receptor feedback inhibitor 1;
PDBTitle: crystal structure of l858r + t790m egfr kinase domain in complex with2 mig6 peptide
80d1ib8a1



not modelled 5.7 7
Fold:Sm-like fold
Superfamily:YhbC-like, C-terminal domain
Family:YhbC-like, C-terminal domain
81d1tf3a3



not modelled 5.6 25
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
82d2o23a1



not modelled 5.4 24
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
83c4bq3A_



not modelled 5.4 21
PDB header:hydrolase
Chain: A: PDB Molecule:b-agarase;
PDBTitle: structural analysis of an exo-beta-agarase
84c6em5v_



not modelled 5.3 22
PDB header:ribosome
Chain: V: PDB Molecule:60s ribosomal protein l23-a;
PDBTitle: state d architectural model (nsa1-tap flag-ytm1) - visualizing the2 assembly pathway of nucleolar pre-60s ribosomes

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite