Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3843c_(-)_4315746_4316774
DateSat Aug 10 22:05:02 BST 2019
Unique Job ID52945d06adc34148
SequenceVIQVCSQCGT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:16.132 Y:21.570 Z:26.639
Model (left) based on template c2kdxA_
Top template information
PDB header:metal-binding protein
Chain: A: PDB Molecule:hydrogenase/urease nickel incorporation protein
PDBTitle: solution structure of hypa protein
Confidence and coverage
Confidence: 54.2% Coverage: 7%
24 residues ( 7% of your sequence) have been modelled with 54.2% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2kdxA_



54.2 17
PDB header:metal-binding protein
Chain: A: PDB Molecule:hydrogenase/urease nickel incorporation protein
PDBTitle: solution structure of hypa protein
2c1fftG_



51.3 11
PDB header:oxidoreductase
Chain: G: PDB Molecule:ubiquinol oxidase;
PDBTitle: the structure of ubiquinol oxidase from escherichia coli
3d2gmga1



41.3 21
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:PF0610-like
4c4nl6C_



41.2 12
PDB header:splicing
Chain: C: PDB Molecule:survival motor neuron protein;
PDBTitle: structure of the full-length form of the protein smn found in healthy2 patients
5d1ee8a3



40.4 33
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
6d1k3xa3



38.5 33
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
7d2fiya1



36.5 39
Fold:FdhE-like
Superfamily:FdhE-like
Family:FdhE-like
8d1tdza3



35.7 38
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
9d1fftb2



30.8 6
Fold:Transmembrane helix hairpin
Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region
Family:Cytochrome c oxidase subunit II-like, transmembrane region
10d1l1ta3



30.3 42
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
11d1r2za3



30.1 42
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
12d1k82a3



29.9 29
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
13c6agfB_



26.0 14
PDB header:membrane protein
Chain: B: PDB Molecule:sodium channel subunit beta-1;
PDBTitle: structure of the human voltage-gated sodium channel nav1.4 in complex2 with beta1
14c2gb5B_



25.3 23
PDB header:hydrolase
Chain: B: PDB Molecule:nadh pyrophosphatase;
PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution
15c5zb8B_



23.5 30
PDB header:dna binding protein
Chain: B: PDB Molecule:pfuendoq;
PDBTitle: crystal structure of the novel lesion-specific endonuclease pfuendoq2 from pyrococcus furiosus
16c6ok1B_



23.3 36
PDB header:transport protein
Chain: B: PDB Molecule:chsh2(duf35);
PDBTitle: ltp2-chsh2(duf35) aldolase
17c5mg5W_



23.1 18
PDB header:transferase
Chain: W: PDB Molecule:2,4-diacetylphloroglucinol biosynthesis protein;
PDBTitle: a multi-component acyltransferase phlabc from pseudomonas protegens2 soaked with the monoacetylphloroglucinol (mapg)
18c3cngC_



21.4 31
PDB header:hydrolase
Chain: C: PDB Molecule:nudix hydrolase;
PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea
19c4rkuI_



20.7 29
PDB header:photosynthesis
Chain: I: PDB Molecule:photosystem i reaction center subunit viii;
PDBTitle: crystal structure of plant photosystem i at 3 angstrom resolution
20d2gnra1



20.3 25
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:SSO2064-like
21c3a44D_



not modelled 20.2 22
PDB header:metal binding protein
Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa;
PDBTitle: crystal structure of hypa in the dimeric form
22c4y28I_



not modelled 18.3 29
PDB header:photosynthesis
Chain: I: PDB Molecule:photosystem i reaction center subunit viii;
PDBTitle: the structure of plant photosystem i super-complex at 2.8 angstrom2 resolution.
23d2e74d2



not modelled 17.1 28
Fold:Single transmembrane helix
Superfamily:ISP transmembrane anchor
Family:ISP transmembrane anchor
24d1zfoa_



not modelled 16.7 33
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LASP-1
25c2mvwA_



not modelled 14.3 41
PDB header:metal binding protein
Chain: A: PDB Molecule:protein pml;
PDBTitle: solution structure of the trim19 b-box1 (b1) of human promyelocytic2 leukemia (pml)
26c4xk8I_



not modelled 14.2 24
PDB header:photosynthesis
Chain: I: PDB Molecule:photosystem i reaction center subunit viii;
PDBTitle: crystal structure of plant photosystem i-lhci super-complex at 2.82 angstrom resolution
27c4xk8i_



not modelled 14.1 24
PDB header:photosynthesis
Chain: I: PDB Molecule:photosystem i reaction center subunit viii;
PDBTitle: crystal structure of plant photosystem i-lhci super-complex at 2.82 angstrom resolution
28c6et9H_



not modelled 13.7 38
PDB header:transferase
Chain: H: PDB Molecule:pfam duf35;
PDBTitle: structure of the acetoacetyl-coa-thiolase/hmg-coa-synthase complex2 from methanothermococcus thermolithotrophicus at 2.75 a
29c5l8rI_



not modelled 13.6 24
PDB header:oxidoreductase
Chain: I: PDB Molecule:photosystem i reaction center subunit viii;
PDBTitle: the structure of plant photosystem i super-complex at 2.6 angstrom2 resolution.
30c2o01I_



not modelled 12.7 29
PDB header:photosynthesis
Chain: I: PDB Molecule:photosystem i reaction center subunit viii;
PDBTitle: the structure of a plant photosystem i supercomplex at 3.4 angstrom2 resolution
31c6ijoI_



not modelled 12.5 18
PDB header:photosynthesis
Chain: I: PDB Molecule:psai;
PDBTitle: photosystem i of chlamydomonas reinhardtii
32c5zjiI_



not modelled 12.1 24
PDB header:membrane protein
Chain: I: PDB Molecule:photosystem i reaction center subunit viii;
PDBTitle: structure of photosystem i supercomplex with light-harvesting2 complexes i and ii
33c6igzI_



not modelled 11.9 14
PDB header:plant protein
Chain: I: PDB Molecule:psai;
PDBTitle: structure of psi-lhci
34c2micA_



not modelled 11.9 29
PDB header:membrane protein
Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily member 16;
PDBTitle: nmr structure of p75 transmembrane domain in dpc micelles
35c2micB_



not modelled 11.9 29
PDB header:membrane protein
Chain: B: PDB Molecule:tumor necrosis factor receptor superfamily member 16;
PDBTitle: nmr structure of p75 transmembrane domain in dpc micelles
36c2pziA_



not modelled 11.7 24
PDB header:transferase
Chain: A: PDB Molecule:probable serine/threonine-protein kinase pkng;
PDBTitle: crystal structure of protein kinase pkng from mycobacterium2 tuberculosis in complex with tetrahydrobenzothiophene ax20017
37d1ibia1



not modelled 11.6 31
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
38c5iy9Q_



not modelled 11.6 19
PDB header:transcription, transferase/dna/rna
Chain: Q: PDB Molecule:general transcription factor iie subunit 1;
PDBTitle: human holo-pic in the initial transcribing state (no iis)
39c2yevB_



not modelled 11.3 11
PDB header:electron transport
Chain: B: PDB Molecule:cytochrome c oxidase subunit 2;
PDBTitle: structure of caa3-type cytochrome oxidase
40d1x6ha1



not modelled 11.1 83
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
41c2i5oA_



not modelled 10.8 31
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase eta;
PDBTitle: solution structure of the ubiquitin-binding zinc finger2 (ubz) domain of the human dna y-polymerase eta
42c3chxG_



not modelled 10.7 10
PDB header:membrane protein
Chain: G: PDB Molecule:pmoc;
PDBTitle: crystal structure of methylosinus trichosporium ob3b particulate2 methane monooxygenase (pmmo)
43c1g5jB_



not modelled 10.2 41
PDB header:apoptosis
Chain: B: PDB Molecule:bad protein;
PDBTitle: complex of bcl-xl with peptide from bad
44c6o3pA_



not modelled 9.6 39
PDB header:hydrolase
Chain: A: PDB Molecule:peroxisomal nadh pyrophosphatase nudt12;
PDBTitle: crystal structure of the catalytic domain of mouse nudt12 in complex2 with amp and 3 mg2+ ions
45c1iflA_



not modelled 9.6 13
PDB header:virus
Chain: A: PDB Molecule:inovirus;
PDBTitle: molecular models and structural comparisons of native and2 mutant class i filamentous bacteriophages ff (fd, f1, m13),3 if1 and ike
46c6jo5I_



not modelled 9.3 14
PDB header:photosynthesis
Chain: I: PDB Molecule:photosystem i reaction center subunit viii;
PDBTitle: structure of the green algal photosystem i supercomplex with light-2 harvesting complex i
47c1yewC_



not modelled 9.2 11
PDB header:oxidoreductase, membrane protein
Chain: C: PDB Molecule:particulate methane monooxygenase subunit c2;
PDBTitle: crystal structure of particulate methane monooxygenase
48c2pptA_



not modelled 9.2 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin-2;
PDBTitle: crystal structure of thioredoxin-2
49c2lvuA_



not modelled 8.7 50
PDB header:transcription
Chain: A: PDB Molecule:zinc finger and btb domain-containing protein 17;
PDBTitle: solution structure of miz-1 zinc finger 10
50c4u3eA_



not modelled 8.5 29
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleoside triphosphate reductase;
PDBTitle: anaerobic ribonucleotide reductase
51c6hmsB_



not modelled 8.2 29
PDB header:replication
Chain: B: PDB Molecule:dna polymerase ii large subunit,dna polymerase ii large
PDBTitle: cryo-em map of dna polymerase d from pyrococcus abyssi in complex with2 dna
52c2ki9A_



not modelled 8.1 31
PDB header:membrane protein
Chain: A: PDB Molecule:cannabinoid receptor 2;
PDBTitle: human cannabinoid receptor-2 helix 6
53c5lnku_



not modelled 8.0 38
PDB header:oxidoreductase
Chain: U: PDB Molecule:
PDBTitle: entire ovine respiratory complex i
54c2bzwB_



not modelled 8.0 41
PDB header:transcription
Chain: B: PDB Molecule:bcl2-antagonist of cell death;
PDBTitle: the crystal structure of bcl-xl in complex with full-length bad
55c5oqmW_



not modelled 7.8 32
PDB header:transcription
Chain: W: PDB Molecule:transcription factor tfiie subunit;
PDBTitle: structure of yeast transcription pre-initiation complex with tfiih and2 core mediator
56c6hwhB_



not modelled 7.7 7
PDB header:electron transport
Chain: B: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
57c3j1rE_



not modelled 7.6 36
PDB header:cell adhesion, structural protein
Chain: E: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
58c3j1rU_



not modelled 7.6 36
PDB header:cell adhesion, structural protein
Chain: U: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
59c3j1rJ_



not modelled 7.6 36
PDB header:cell adhesion, structural protein
Chain: J: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
60c3j1rH_



not modelled 7.6 36
PDB header:cell adhesion, structural protein
Chain: H: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
61c3j1rT_



not modelled 7.6 36
PDB header:cell adhesion, structural protein
Chain: T: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
62c3j1rO_



not modelled 7.6 36
PDB header:cell adhesion, structural protein
Chain: O: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
63c3j1rF_



not modelled 7.6 36
PDB header:cell adhesion, structural protein
Chain: F: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
64c3j1rK_



not modelled 7.6 36
PDB header:cell adhesion, structural protein
Chain: K: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
65c3j1rN_



not modelled 7.6 36
PDB header:cell adhesion, structural protein
Chain: N: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
66c3j1rA_



not modelled 7.6 36
PDB header:cell adhesion, structural protein
Chain: A: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
67c3j1rL_



not modelled 7.6 36
PDB header:cell adhesion, structural protein
Chain: L: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
68c3j1rI_



not modelled 7.6 36
PDB header:cell adhesion, structural protein
Chain: I: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
69c3j1rQ_



not modelled 7.6 36
PDB header:cell adhesion, structural protein
Chain: Q: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
70c3j1rS_



not modelled 7.6 36
PDB header:cell adhesion, structural protein
Chain: S: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
71c3j1rC_



not modelled 7.6 36
PDB header:cell adhesion, structural protein
Chain: C: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
72c3j1rP_



not modelled 7.6 36
PDB header:cell adhesion, structural protein
Chain: P: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
73c3j1rM_



not modelled 7.6 36
PDB header:cell adhesion, structural protein
Chain: M: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
74c3j1rR_



not modelled 7.6 36
PDB header:cell adhesion, structural protein
Chain: R: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
75c3j1rB_



not modelled 7.6 36
PDB header:cell adhesion, structural protein
Chain: B: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
76c3j1rD_



not modelled 7.6 36
PDB header:cell adhesion, structural protein
Chain: D: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
77c3j1rG_



not modelled 7.6 36
PDB header:cell adhesion, structural protein
Chain: G: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
78c6hwhL_



not modelled 7.5 10
PDB header:electron transport
Chain: L: PDB Molecule:cytochrome c oxidase subunit 2;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
79c1qleB_



not modelled 7.5 15
PDB header:oxidoreductase/immune system
Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii;
PDBTitle: cryo-structure of the paracoccus denitrificans four-subunit cytochrome2 c oxidase in the completely oxidized state complexed with an antibody3 fv fragment
80c1ar1B_



not modelled 7.5 15
PDB header:complex (oxidoreductase/antibody)
Chain: B: PDB Molecule:cytochrome c oxidase;
PDBTitle: structure at 2.7 angstrom resolution of the paracoccus2 denitrificans two-subunit cytochrome c oxidase complexed3 with an antibody fv fragment
81c5tc1M_



not modelled 7.5 26
PDB header:viral protein/rna
Chain: M: PDB Molecule:maturation protein;
PDBTitle: in situ structures of the genome and genome-delivery apparatus in2 ssrna bacteriophage ms2
82c2ljcA_



not modelled 7.1 28
PDB header:transport protein/inhibitor
Chain: A: PDB Molecule:m2 protein, bm2 protein chimera;
PDBTitle: structure of the influenza am2-bm2 chimeric channel bound to2 rimantadine
83c1w8xP_



not modelled 7.0 14
PDB header:virus
Chain: P: PDB Molecule:protein p16;
PDBTitle: structural analysis of prd1
84c2kluA_



not modelled 6.9 21
PDB header:immune system, membrane protein
Chain: A: PDB Molecule:t-cell surface glycoprotein cd4;
PDBTitle: nmr structure of the transmembrane and cytoplasmic domains2 of human cd4
85d1v9wa_



not modelled 6.9 50
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Txnl5-like
86d1bboa1



not modelled 6.7 33
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
87c2d3hF_



not modelled 6.6 30
PDB header:structural protein
Chain: F: PDB Molecule:collagen model peptides (pro-pro-gly)4-hyp-hyp-
PDBTitle: crystal structures of collagen model peptides (pro-pro-gly)2 4-hyp-hyp-gly-(pro-pro-gly)4
88c4us3A_



not modelled 6.6 13
PDB header:transport protein
Chain: A: PDB Molecule:transporter;
PDBTitle: crystal structure of the bacterial nss member mhst in an2 occluded inward-facing state
89c5ijlA_



not modelled 6.5 26
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase ii large subunit;
PDBTitle: d-family dna polymerase - dp2 subunit (catalytic subunit)
90c2h3oA_



not modelled 6.4 32
PDB header:membrane protein
Chain: A: PDB Molecule:merf;
PDBTitle: structure of merft, a membrane protein with two trans-2 membrane helices
91d1ma3a_



not modelled 6.4 18
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Sir2 family of transcriptional regulators
92c6gymW_



not modelled 6.2 32
PDB header:transcription
Chain: W: PDB Molecule:transcription initiation factor iie subunit alpha,
PDBTitle: structure of a yeast closed complex with distorted dna (ccdist)
93c3a19F_



not modelled 6.2 30
PDB header:structural protein
Chain: F: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-oog-(ppg)4_h monoclinic, twinned crystal
94c3a08D_



not modelled 6.2 30
PDB header:structural protein
Chain: D: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-oog-(ppg)4, monoclinic, twinned crystal
95c2d3hD_



not modelled 6.2 30
PDB header:structural protein
Chain: D: PDB Molecule:collagen model peptides (pro-pro-gly)4-hyp-hyp-
PDBTitle: crystal structures of collagen model peptides (pro-pro-gly)2 4-hyp-hyp-gly-(pro-pro-gly)4
96d1ubdc2



not modelled 6.1 50
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
97d1m2ka_



not modelled 6.0 24
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Sir2 family of transcriptional regulators
98c6j9lE_



not modelled 5.9 50
PDB header:hydrolase inhibitor/hydrolase
Chain: E: PDB Molecule:hnh endonuclease family protein;
PDBTitle: fnobh+acriic2
99c2nb9A_



not modelled 5.9 23
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of zitp zinc finger

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Transmembrane helix prediction 

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