Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3845_(-)_4319459_4319818
DateSat Aug 10 22:05:02 BST 2019
Unique Job ID77e457625c6a9633
SequenceVDRVRRVVTD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:23.194 Y:28.272 Z:27.816
Model (left) based on template c5ux1D_
Top template information
PDB header:lyase
Chain: D: PDB Molecule:trna-(ms(2)io(6)a)-hydroxylase-like;
PDBTitle: protein 43 with aldehyde deformylating oxygenase activity from2 synechococcus
Confidence and coverage
Confidence: 31.1% Coverage: 22%
26 residues ( 22% of your sequence) have been modelled with 31.1% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5ux1D_



31.1 27
PDB header:lyase
Chain: D: PDB Molecule:trna-(ms(2)io(6)a)-hydroxylase-like;
PDBTitle: protein 43 with aldehyde deformylating oxygenase activity from2 synechococcus
2d2itba1



29.2 24
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:MiaE-like
3c2wghA_



23.0 35
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase large
PDBTitle: human ribonucleotide reductase r1 subunit (rrm1) in complex2 with datp and mg.
4c4txoB_



18.3 50
PDB header:oxidodreductase/copper binding protein
Chain: B: PDB Molecule:blr1131 protein;
PDBTitle: crystal structure of the mixed disulfide complex of thioredoxin-like2 tlpas(c110s) and copper chaperone scois(c74s)
5c1xjeA_



17.4 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleotide reductase, b12-dependent;
PDBTitle: structural mechanism of allosteric substrate specificity in a2 ribonucleotide reductase: dttp-gdp complex
6d1r5la2



17.1 29
Fold:SpoIIaa-like
Superfamily:CRAL/TRIO domain
Family:CRAL/TRIO domain
7d1peqa2



16.0 25
Fold:PFL-like glycyl radical enzymes
Superfamily:PFL-like glycyl radical enzymes
Family:R1 subunit of ribonucleotide reductase, C-terminal domain
8c6cgmA_



15.9 35
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase;
PDBTitle: x-ray crystal structure of bacillus subtilis ribonucleotide reductase2 nrde alpha subunit (nucleotide free)
9d2cuqa1



15.4 33
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
10c2cvuA_



15.0 30
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase large chain
PDBTitle: structures of yeast ribonucleotide reductase i
11c3wl7A_



14.4 28
PDB header:hydrolase
Chain: A: PDB Molecule:oxidized polyvinyl alcohol hydrolase;
PDBTitle: the complex structure of poph s172c with ligand, aca
12c2jphA_



12.8 22
PDB header:signaling protein, protein binding
Chain: A: PDB Molecule:plexin-b1;
PDBTitle: nmr solution structure of the rho gtpase binding domain of2 human plexin-b1
13c6n5uC_



11.6 33
PDB header:metal binding protein
Chain: C: PDB Molecule:protein sco1 homolog 1, mitochondrial;
PDBTitle: crystal structure of arabidopsis thaliana scoi with copper bound
14c1pemA_



11.1 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase 2 alpha
PDBTitle: ribonucleotide reductase protein r1e from salmonella2 typhimurium
15c6dqwD_



10.8 20
PDB header:oxidoreductase
Chain: D: PDB Molecule:ribonucleoside-diphosphate reductase, alpha chain;
PDBTitle: flavobacterium johnsoniae class id ribonucleotide reductase alpha2 subuint
16c6dqxA_



10.7 30
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase, alpha chain;
PDBTitle: actinobacillus ureae class id ribonucleotide reductase alpha subunit
17d1xoub_



10.1 38
Fold:EspA/CesA-like
Superfamily:EspA/CesA-like
Family:EspA chaperone CesA
18c3hnfA_



9.6 35
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase large subunit;
PDBTitle: crystal structure of human ribonucleotide reductase 1 bound to the2 effectors ttp and datp
19c6fh4D_



9.3 6
PDB header:signaling protein
Chain: D: PDB Molecule:transcriptional regulator ctsr;
PDBTitle: ctsr c-terminal domain with bound phospho-arginine
20d1cwva3



8.7 25
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Invasin/intimin cell-adhesion fragments
Family:Invasin/intimin cell-adhesion fragments
21c3rsrA_



not modelled 8.7 30
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase large chain 1;
PDBTitle: crystal structure of 5-nitp inhibition of yeast ribonucleotide2 reductase
22c6rlxB_



not modelled 8.6 27
PDB header:hormone(muscle relaxant)
Chain: B: PDB Molecule:relaxin, b-chain;
PDBTitle: x-ray structure of human relaxin at 1.5 angstroms. comparison to2 insulin and implications for receptor binding determinants
23c2k17A_



not modelled 8.3 27
PDB header:transcription
Chain: A: PDB Molecule:transcription initiation factor tfiid subunit 3;
PDBTitle: solution structure of the taf3 phd domain in complex with a2 h3k4me3 peptide
24c5b42A_



not modelled 8.0 25
PDB header:dna binding protein
Chain: A: PDB Molecule:dna mismatch repair protein mutl;
PDBTitle: crystal structure of the c-terminal endonuclease domain of aquifex2 aeolicus mutl.
25d3bgea1



not modelled 7.9 38
Fold:post-AAA+ oligomerization domain-like
Superfamily:post-AAA+ oligomerization domain-like
Family:MgsA/YrvN C-terminal domain-like
26c2yh5A_



not modelled 7.8 24
PDB header:lipid binding protein
Chain: A: PDB Molecule:dapx protein;
PDBTitle: structure of the c-terminal domain of bamc
27c3r1rB_



not modelled 7.7 30
PDB header:complex (oxidoreductase/peptide)
Chain: B: PDB Molecule:ribonucleotide reductase r1 protein;
PDBTitle: ribonucleotide reductase r1 protein with amppnp occupying2 the activity site from escherichia coli
28c2p58C_



not modelled 7.6 36
PDB header:transport protein/chaperone
Chain: C: PDB Molecule:putative type iii secretion protein yscg;
PDBTitle: structure of the yersinia pestis type iii secretion system needle2 protein yscf in complex with its chaperones ysce/yscg
29c3ph0C_



not modelled 7.5 43
PDB header:chaperone
Chain: C: PDB Molecule:ascg;
PDBTitle: crystal structure of the heteromolecular chaperone, asce-ascg, from2 the type iii secretion system in aeromonas hydrophila
30d1g8fa1



not modelled 7.5 17
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:ATP sulfurylase N-terminal domain
31d1cwva2



not modelled 7.2 50
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Invasin/intimin cell-adhesion fragments
Family:Invasin/intimin cell-adhesion fragments
32c2xzmW_



not modelled 7.2 17
PDB header:ribosome
Chain: W: PDB Molecule:40s ribosomal protein s4;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1
33c2uwjG_



not modelled 7.1 50
PDB header:chaperone
Chain: G: PDB Molecule:type iii export protein pscg;
PDBTitle: structure of the heterotrimeric complex which regulates type iii2 secretion needle formation
34d2j6ba1



not modelled 7.0 28
Fold:STIV B116-like
Superfamily:STIV B116-like
Family:STIV B116-like
35c5ag8A_



not modelled 7.0 31
PDB header:hydrolase
Chain: A: PDB Molecule:gingipain r2;
PDBTitle: crystal structure of a mutant (665i6h) of the c-terminal2 domain of rgpb
36d1rlra2



not modelled 6.6 30
Fold:PFL-like glycyl radical enzymes
Superfamily:PFL-like glycyl radical enzymes
Family:R1 subunit of ribonucleotide reductase, C-terminal domain
37c3n00B_



not modelled 6.6 35
PDB header:transcription regulator
Chain: B: PDB Molecule:nuclear receptor corepressor 1;
PDBTitle: crystal structure of a deletion mutant of human reverba ligand binding2 domain bound with an ncor id1 peptide determined to 2.60a
38c4an7B_



not modelled 6.6 55
PDB header:hydrolase/hydrolase inhibitor
Chain: B: PDB Molecule:trypsin inhibitor;
PDBTitle: kunitz type trypsin inhibitor complex with porcine trypsin
39d1tdha3



not modelled 6.3 31
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
40c4tq1B_



not modelled 6.2 33
PDB header:protein binding
Chain: B: PDB Molecule:tectonin beta-propeller repeat-containing protein 1;
PDBTitle: crystal structure of human atg5-tecair
41c2kr7A_



not modelled 6.2 63
PDB header:isomerase
Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase slyd;
PDBTitle: solution structure of helicobacter pylori slyd
42c4yhwA_



not modelled 5.9 38
PDB header:splicing
Chain: A: PDB Molecule:u4/u6 small nuclear ribonucleoprotein prp3;
PDBTitle: yeast prp3 (296-469) in complex with fragment of u4/u6 di-snrna
43d1zaka2



not modelled 5.9 54
Fold:Rubredoxin-like
Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain
Family:Microbial and mitochondrial ADK, insert "zinc finger" domain
44c2rliA_



not modelled 5.7 19
PDB header:metal transport
Chain: A: PDB Molecule:sco2 protein homolog, mitochondrial;
PDBTitle: solution structure of cu(i) human sco2
45c3jcrK_



not modelled 5.6 38
PDB header:splicing
Chain: K: PDB Molecule:hprp3;
PDBTitle: 3d structure determination of the human*u4/u6.u5* tri-snrnp complex
46c2lv4A_



not modelled 5.5 40
PDB header:protein binding
Chain: A: PDB Molecule:putative outer membrane or exported protein;
PDBTitle: zirs c-terminal domain

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