Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3848_(-)_4322504_4323412
DateSat Aug 10 22:05:02 BST 2019
Unique Job IDbab1f9baaab2e7c6
SequenceMLAATLLSLG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:49.287 Y:46.059 Z:54.359
Model (left) based on template c5vkvA_
Top template information
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c-type biogenesis protein ccda;
PDBTitle: solution nmr structure of the membrane electron transporter ccda
Confidence and coverage
Confidence: 95.7% Coverage: 52%
157 residues ( 52% of your sequence) have been modelled with 95.7% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5vkvA_



95.7 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c-type biogenesis protein ccda;
PDBTitle: solution nmr structure of the membrane electron transporter ccda
2c6mjpF_



63.8 11
PDB header:lipid transport
Chain: F: PDB Molecule:fig000988: predicted permease;
PDBTitle: lptb(e163q)fgc from vibrio cholerae
3c5x5yG_



56.6 17
PDB header:membrane protein
Chain: G: PDB Molecule:uncharacterized protein;
PDBTitle: a membrane protein complex
4c5x5yF_



53.0 10
PDB header:membrane protein
Chain: F: PDB Molecule:uncharacterized protein;
PDBTitle: a membrane protein complex
5c5l75G_



44.3 14
PDB header:transport protein
Chain: G: PDB Molecule:fig000906: predicted permease;
PDBTitle: a protein structure
6c3hd6A_



44.2 20
PDB header:membrane protein, transport protein
Chain: A: PDB Molecule:ammonium transporter rh type c;
PDBTitle: crystal structure of the human rhesus glycoprotein rhcg
7c6mjpG_



44.0 16
PDB header:lipid transport
Chain: G: PDB Molecule:lps export abc transporter permease lptg;
PDBTitle: lptb(e163q)fgc from vibrio cholerae
8c5ze3B_



36.2 40
PDB header:oxidoreductase
Chain: B: PDB Molecule:lysyl oxidase homolog 2;
PDBTitle: crystal structure of human lysyl oxidase-like 2 (hloxl2) in a2 precursor state
9c5l75F_



35.9 6
PDB header:transport protein
Chain: F: PDB Molecule:fig000988: predicted permease;
PDBTitle: a protein structure
10c5aezA_



31.1 15
PDB header:membrane protein
Chain: A: PDB Molecule:mep2;
PDBTitle: crystal structure of candida albicans mep2
11c5a43B_



30.3 9
PDB header:transport protein
Chain: B: PDB Molecule:putative fluoride ion transporter crcb;
PDBTitle: crystal structure of a dual topology fluoride ion channel.
12d1mxaa1



30.0 55
Fold:S-adenosylmethionine synthetase
Superfamily:S-adenosylmethionine synthetase
Family:S-adenosylmethionine synthetase
13d2p02a1



28.5 55
Fold:S-adenosylmethionine synthetase
Superfamily:S-adenosylmethionine synthetase
Family:S-adenosylmethionine synthetase
14d1qm4a1



28.3 55
Fold:S-adenosylmethionine synthetase
Superfamily:S-adenosylmethionine synthetase
Family:S-adenosylmethionine synthetase
15d1ei5a2



28.1 62
Fold:Streptavidin-like
Superfamily:D-aminopeptidase, middle and C-terminal domains
Family:D-aminopeptidase, middle and C-terminal domains
16d2e74f1



27.9 57
Fold:Single transmembrane helix
Superfamily:PetM subunit of the cytochrome b6f complex
Family:PetM subunit of the cytochrome b6f complex
17c4mbyB_



23.5 24
PDB header:viral protein
Chain: B: PDB Molecule:major capsid protein vp1;
PDBTitle: structure of b-lymphotropic polyomavirus vp1 in complex with 3'-2 sialyllactose
18c5aexJ_



21.3 13
PDB header:membrane protein
Chain: J: PDB Molecule:ammonium transporter mep2;
PDBTitle: crystal structure of saccharomyces cerevisiae mep2
19c5vn4A_



19.5 42
PDB header:transferase
Chain: A: PDB Molecule:adenine phosphoribosyltransferase, putative;
PDBTitle: crystal structure of adenine phosphoribosyl transferase from2 trypanosoma brucei in complex with amp, pyrophosphate, and ribose-5-3 phosphate
20c3c1iA_



18.1 25
PDB header:transport protein
Chain: A: PDB Molecule:ammonia channel;
PDBTitle: substrate binding, deprotonation and selectivity at the periplasmic2 entrance of the e. coli ammonia channel amtb
21c2kr6A_



not modelled 16.5 13
PDB header:hydrolase
Chain: A: PDB Molecule:presenilin-1;
PDBTitle: solution structure of presenilin-1 ctf subunit
22c2obvA_



not modelled 15.7 55
PDB header:transferase
Chain: A: PDB Molecule:s-adenosylmethionine synthetase isoform type-1;
PDBTitle: crystal structure of the human s-adenosylmethionine synthetase 1 in2 complex with the product
23c3imlB_



not modelled 15.6 45
PDB header:transferase
Chain: B: PDB Molecule:s-adenosylmethionine synthetase;
PDBTitle: crystal structure of s-adenosylmethionine synthetase from burkholderia2 pseudomallei
24c3rv2B_



not modelled 15.5 55
PDB header:transferase
Chain: B: PDB Molecule:s-adenosylmethionine synthase;
PDBTitle: crystal structure of s-adenosylmethionine synthetase from2 mycobacterium marinum
25c5h9uC_



not modelled 15.5 45
PDB header:transferase
Chain: C: PDB Molecule:s-adenosylmethionine synthase;
PDBTitle: crystal structure of a thermostable methionine adenosyltransferase
26c1rg9D_



not modelled 15.5 55
PDB header:transferase
Chain: D: PDB Molecule:s-adenosylmethionine synthetase;
PDBTitle: s-adenosylmethionine synthetase complexed with sam and ppnp
27c4odjA_



not modelled 15.0 45
PDB header:transferase
Chain: A: PDB Molecule:s-adenosylmethionine synthase;
PDBTitle: crystal structure of a putative s-adenosylmethionine synthetase from2 cryptosporidium hominis in complex with s-adenosyl-methionine
28c6hwhX_



not modelled 14.9 23
PDB header:electron transport
Chain: X: PDB Molecule:cytochrome c oxidase polypeptide 4;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
29c3so4C_



not modelled 14.6 45
PDB header:transferase
Chain: C: PDB Molecule:methionine-adenosyltransferase;
PDBTitle: methionine-adenosyltransferase from entamoeba histolytica
30c4le5A_



not modelled 14.5 36
PDB header:transferase
Chain: A: PDB Molecule:s-adenosylmethionine synthetase;
PDBTitle: structure of an unusual s-adenosylmethionine synthetase from2 campylobacter jejuni
31c4k1cB_



not modelled 13.6 13
PDB header:membrane protein/metal transport
Chain: B: PDB Molecule:vacuolar calcium ion transporter;
PDBTitle: vcx1 calcium/proton exchanger
32d1k8ib2



not modelled 13.2 64
Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
33c4k1cA_



not modelled 13.1 13
PDB header:membrane protein/metal transport
Chain: A: PDB Molecule:vacuolar calcium ion transporter;
PDBTitle: vcx1 calcium/proton exchanger
34c3j1zP_



not modelled 12.7 13
PDB header:metal transport
Chain: P: PDB Molecule:cation efflux family protein;
PDBTitle: inward-facing conformation of the zinc transporter yiip revealed by2 cryo-electron microscopy
35d1u7ga_



not modelled 12.6 19
Fold:Ammonium transporter
Superfamily:Ammonium transporter
Family:Ammonium transporter
36c2l9uB_



not modelled 11.7 12
PDB header:membrane protein
Chain: B: PDB Molecule:receptor tyrosine-protein kinase erbb-3;
PDBTitle: spatial structure of dimeric erbb3 transmembrane domain
37c2l9uA_



not modelled 11.7 12
PDB header:membrane protein
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-3;
PDBTitle: spatial structure of dimeric erbb3 transmembrane domain
38c2lx0A_



not modelled 11.1 29
PDB header:membrane protein
Chain: A: PDB Molecule:membrane fusion protein p14;
PDBTitle: arced helix (arch) nmr structure of the reovirus p14 fusion-associated2 small transmembrane (fast) protein transmembrane domain (tmd) in3 dodecyl phosphocholine (dpc) micelles
39c2zt9F_



not modelled 10.9 50
PDB header:photosynthesis
Chain: F: PDB Molecule:cytochrome b6-f complex subunit 7;
PDBTitle: crystal structure of the cytochrome b6f complex from nostoc sp. pcc2 7120
40c4h44F_



not modelled 10.9 50
PDB header:photosynthesis
Chain: F: PDB Molecule:cytochrome b6-f complex subunit 7;
PDBTitle: 2.70 a cytochrome b6f complex structure from nostoc pcc 7120
41c4ogqF_



not modelled 10.9 50
PDB header:electron transport
Chain: F: PDB Molecule:cytochrome b6-f complex subunit 7;
PDBTitle: internal lipid architecture of the hetero-oligomeric cytochrome b6f2 complex
42c4iu8A_



not modelled 10.8 9
PDB header:transport protein
Chain: A: PDB Molecule:nitrite extrusion protein 2;
PDBTitle: crystal structure of a membrane transporter (selenomethionine2 derivative)
43c2ks1A_



not modelled 10.4 25
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation
44c2jwaA_



not modelled 10.4 25
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: erbb2 transmembrane segment dimer spatial structure
45c5aj3m_



not modelled 9.9 50
PDB header:ribosome
Chain: M: PDB Molecule:
PDBTitle: structure of the small subunit of the mammalian mitoribosome
46d1yy9a4



not modelled 9.4 67
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Growth factor receptor domain
Family:Growth factor receptor domain
47c3uc8A_



not modelled 9.3 86
PDB header:de novo protein
Chain: A: PDB Molecule:cyclo-tc1;
PDBTitle: trp-cage cyclo-tc1 - tetragonal crystal form
48c3uc8B_



not modelled 9.3 86
PDB header:de novo protein
Chain: B: PDB Molecule:cyclo-tc1;
PDBTitle: trp-cage cyclo-tc1 - tetragonal crystal form
49c3uc7E_



not modelled 9.3 86
PDB header:de novo protein
Chain: E: PDB Molecule:cyclo-tc1;
PDBTitle: trp-cage cyclo-tc1 - monoclinic crystal form
50c2ll5A_



not modelled 9.3 86
PDB header:de novo protein
Chain: A: PDB Molecule:cyclo-tc1;
PDBTitle: cyclo-tc1 trp-cage
51c3uc7A_



not modelled 9.3 86
PDB header:de novo protein
Chain: A: PDB Molecule:cyclo-tc1;
PDBTitle: trp-cage cyclo-tc1 - monoclinic crystal form
52c3uc7D_



not modelled 9.3 86
PDB header:de novo protein
Chain: D: PDB Molecule:cyclo-tc1;
PDBTitle: trp-cage cyclo-tc1 - monoclinic crystal form
53c3uc7C_



not modelled 9.3 86
PDB header:de novo protein
Chain: C: PDB Molecule:cyclo-tc1;
PDBTitle: trp-cage cyclo-tc1 - monoclinic crystal form
54c3uc7B_



not modelled 9.3 86
PDB header:de novo protein
Chain: B: PDB Molecule:cyclo-tc1;
PDBTitle: trp-cage cyclo-tc1 - monoclinic crystal form
55c3uc7F_



not modelled 9.3 86
PDB header:de novo protein
Chain: F: PDB Molecule:cyclo-tc1;
PDBTitle: trp-cage cyclo-tc1 - monoclinic crystal form
56c3uc8C_



not modelled 9.3 86
PDB header:de novo protein
Chain: C: PDB Molecule:cyclo-tc1;
PDBTitle: trp-cage cyclo-tc1 - tetragonal crystal form
57c6nbxG_



not modelled 8.7 12
PDB header:oxidoreductase
Chain: G: PDB Molecule:nadh-quinone oxidoreductase subunit j;
PDBTitle: t.elongatus ndh (data-set 2)
58c3wl7A_



not modelled 8.4 70
PDB header:hydrolase
Chain: A: PDB Molecule:oxidized polyvinyl alcohol hydrolase;
PDBTitle: the complex structure of poph s172c with ligand, aca
59d2de6a2



not modelled 8.1 40
Fold:TBP-like
Superfamily:Bet v1-like
Family:Ring hydroxylating alpha subunit catalytic domain
60c4g5sZ_



not modelled 7.9 50
PDB header:cell cycle/signaling protein
Chain: Z: PDB Molecule:g-protein-signaling modulator 2;
PDBTitle: structure of lgn gl3/galphai3 complex
61c5twaD_



not modelled 7.8 71
PDB header:apoptosis
Chain: D: PDB Molecule:bak-2 protein;
PDBTitle: crystal structure of geodia cydonium bhp2 in complex with lubomirskia2 baicalensis bak-2
62c5twaC_



not modelled 7.8 71
PDB header:apoptosis
Chain: C: PDB Molecule:bak-2 protein;
PDBTitle: crystal structure of geodia cydonium bhp2 in complex with lubomirskia2 baicalensis bak-2
63d1fftb2



not modelled 7.8 14
Fold:Transmembrane helix hairpin
Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region
Family:Cytochrome c oxidase subunit II-like, transmembrane region
64c2qz5A_



not modelled 7.6 33
PDB header:signaling protein, lipid binding protein
Chain: A: PDB Molecule:axin interactor, dorsalization associated
PDBTitle: crystal structure of the c-terminal domain of aida
65d1vpsa_



not modelled 7.3 21
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Group I dsDNA viruses
Family:Papovaviridae-like VP
66c4fmiN_



not modelled 7.1 18
PDB header:viral protein
Chain: N: PDB Molecule:vp1;
PDBTitle: merkel cell polyomavirus vp1 in complex with 3'-sialyllactosamine
67c4g5sG_



not modelled 6.7 55
PDB header:cell cycle/signaling protein
Chain: G: PDB Molecule:g-protein-signaling modulator 2;
PDBTitle: structure of lgn gl3/galphai3 complex
68c3a5pD_



not modelled 6.6 20
PDB header:sugar binding protein
Chain: D: PDB Molecule:haemagglutinin i;
PDBTitle: crystal structure of hemagglutinin
69c2czsB_



not modelled 6.5 23
PDB header:electron transport
Chain: B: PDB Molecule:cytochrome c, putative;
PDBTitle: crystal structure analysis of the diheme c-type cytochrome dhc2
70c4s1kA_



not modelled 6.4 38
PDB header:viral protein
Chain: A: PDB Molecule:polyhedrin;
PDBTitle: structure of uranotaenia sapphirina cypovirus (cpv17) polyhedrin at2 100 k
71c3j39Q_



not modelled 6.3 31
PDB header:ribosome
Chain: Q: PDB Molecule:60s ribosomal protein l18;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
72d1prtf_



not modelled 6.2 38
Fold:OB-fold
Superfamily:Bacterial enterotoxins
Family:Bacterial AB5 toxins, B-subunits
73c2ka1B_



not modelled 6.2 42
PDB header:membrane protein
Chain: B: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting
PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles
74c2ka2A_



not modelled 6.2 42
PDB header:membrane protein
Chain: A: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting
PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles with his173-ser172 intermonomer3 hydrogen bond restraints
75d2bida_



not modelled 6.1 57
Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
76c5tcxA_



not modelled 6.1 20
PDB header:cell invasion
Chain: A: PDB Molecule:cd81 antigen;
PDBTitle: crystal structure of human tetraspanin cd81
77c6g72A_



not modelled 5.9 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh-ubiquinone oxidoreductase chain 3;
PDBTitle: mouse mitochondrial complex i in the deactive state
78c2n90A_



not modelled 5.8 22
PDB header:transferase
Chain: A: PDB Molecule:high affinity nerve growth factor receptor;
PDBTitle: trka transmembrane domain nmr structure in dpc micelles
79c2n90B_



not modelled 5.8 22
PDB header:transferase
Chain: B: PDB Molecule:high affinity nerve growth factor receptor;
PDBTitle: trka transmembrane domain nmr structure in dpc micelles
80c1bzkA_



not modelled 5.7 25
PDB header:transport protein
Chain: A: PDB Molecule:protein (band 3 anion transport protein);
PDBTitle: structural studies on the effects of the deletion in the2 red cell anion exchanger (band3, ae1) associated with3 south east asian ovalocytosis.
81c2n4xA_



not modelled 5.7 16
PDB header:membrane protein
Chain: A: PDB Molecule:cytochrome c-type biogenesis protein (ccda);
PDBTitle: structure of the transmembrane electron transporter ccda
82c6qvcB_



not modelled 5.6 8
PDB header:membrane protein
Chain: B: PDB Molecule:chloride channel protein 1;
PDBTitle: cryoem structure of the human clc-1 chloride channel, cbs state 1
83d1ddba_



not modelled 5.3 57
Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
84c2lonA_



not modelled 5.2 12
PDB header:membrane protein
Chain: A: PDB Molecule:hig1 domain family member 1b;
PDBTitle: backbone structure of human membrane protein higd1b
85c5aexB_



not modelled 5.2 11
PDB header:membrane protein
Chain: B: PDB Molecule:ammonium transporter mep2;
PDBTitle: crystal structure of saccharomyces cerevisiae mep2
86d1vd4a_



not modelled 5.2 33
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
87c6iedA_



not modelled 5.2 6
PDB header:membrane protein
Chain: A: PDB Molecule:heme a synthase;
PDBTitle: crystal structure of heme a synthase from bacillus subtilis

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below