Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3850_(-)_4324193_4324849
DateSat Aug 10 22:05:03 BST 2019
Unique Job IDbfb71124eda092bb
SequenceMGLFGKRKSR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:21.220 Y:28.070 Z:38.943
Model (left) based on template c4dndA_
Top template information
PDB header:transport protein
Chain: A: PDB Molecule:syntaxin-10;
PDBTitle: crystal structure of syntaxin 10 from homo sapiens
Confidence and coverage
Confidence: 71.1% Coverage: 19%
41 residues ( 19% of your sequence) have been modelled with 71.1% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4dndA_



71.1 17
PDB header:transport protein
Chain: A: PDB Molecule:syntaxin-10;
PDBTitle: crystal structure of syntaxin 10 from homo sapiens
2c5frgA_



68.8 24
PDB header:protein binding
Chain: A: PDB Molecule:formin-binding protein 1-like;
PDBTitle: the nmr structure of the cdc42-interacting region of toca1
3c2ke4A_



66.6 24
PDB header:membrane protein
Chain: A: PDB Molecule:cdc42-interacting protein 4;
PDBTitle: the nmr structure of the tc10 and cdc42 interacting domain2 of cip4
4d1lvfa_



65.5 17
Fold:STAT-like
Superfamily:t-snare proteins
Family:t-snare proteins
5c1f4jC_



39.2 11
PDB header:oxidoreductase
Chain: C: PDB Molecule:catalase;
PDBTitle: structure of tetragonal crystals of human erythrocyte catalase
6d1szpa1



36.3 31
Fold:SAM domain-like
Superfamily:Rad51 N-terminal domain-like
Family:DNA repair protein Rad51, N-terminal domain
7d4blca_



34.5 11
Fold:Heme-dependent catalase-like
Superfamily:Heme-dependent catalase-like
Family:Heme-dependent catalases
8c4cabA_



34.3 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:catalase;
PDBTitle: the refined structure of catalase dr1998 from deinococcus radiodurans2 at 2.6 a resolution
9d1e93a_



31.7 14
Fold:Heme-dependent catalase-like
Superfamily:Heme-dependent catalase-like
Family:Heme-dependent catalases
10d1dgfa_



31.5 11
Fold:Heme-dependent catalase-like
Superfamily:Heme-dependent catalase-like
Family:Heme-dependent catalases
11c6fiaB_



29.2 27
PDB header:rna binding protein
Chain: B: PDB Molecule:line-1 retrotransposable element orf1 protein;
PDBTitle: structure of the human line-1 orf1p coiled coil domain
12c1u9pA_



29.0 7
PDB header:unknown function
Chain: A: PDB Molecule:parc;
PDBTitle: permuted single-chain arc
13d1mnta_



27.9 14
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
14d1m7sa_



27.9 10
Fold:Heme-dependent catalase-like
Superfamily:Heme-dependent catalase-like
Family:Heme-dependent catalases
15c3geiB_



27.0 26
PDB header:hydrolase
Chain: B: PDB Molecule:trna modification gtpase mnme;
PDBTitle: crystal structure of mnme from chlorobium tepidum in complex2 with gcp
16c1ye9E_



26.6 14
PDB header:oxidoreductase
Chain: E: PDB Molecule:catalase hpii;
PDBTitle: crystal structure of proteolytically truncated catalase2 hpii from e. coli
17d1gwea_



26.0 24
Fold:Heme-dependent catalase-like
Superfamily:Heme-dependent catalase-like
Family:Heme-dependent catalases
18c4qoqC_



24.7 7
PDB header:oxidoreductase
Chain: C: PDB Molecule:catalase;
PDBTitle: structure of bacillus pumilus catalase with guaiacol bound
19c6g18t_



23.2 24
PDB header:ribosome
Chain: T: PDB Molecule:40s ribosomal protein s19;
PDBTitle: cryo-em structure of a late human pre-40s ribosomal subunit - state c
20c6g53t_



23.1 24
PDB header:ribosome
Chain: T: PDB Molecule:40s ribosomal protein s19;
PDBTitle: cryo-em structure of a late human pre-40s ribosomal subunit - state e
21c2lswA_



not modelled 21.9 33
PDB header:blood clotting
Chain: A: PDB Molecule:disabled homolog 2;
PDBTitle: structure, sulfatide-binding properties, and inhibition of platelet2 aggregation by a disabled-2-derived peptide
22c4b7hB_



not modelled 21.5 19
PDB header:oxidoreductase
Chain: B: PDB Molecule:catalase;
PDBTitle: structure of a highdose liganded bacterial catalase
23c3us6A_



not modelled 17.3 26
PDB header:transferase
Chain: A: PDB Molecule:histidine-containing phosphotransfer protein type 1,
PDBTitle: crystal structure of histidine-containing phosphotransfer protein2 mthpt1 from medicago truncatula
24c2xq1M_



not modelled 16.9 4
PDB header:oxidoreductase
Chain: M: PDB Molecule:peroxisomal catalase;
PDBTitle: crystal structure of peroxisomal catalase from the yeast hansenula2 polymorpha
25c1xzqA_



not modelled 16.8 14
PDB header:hydrolase
Chain: A: PDB Molecule:probable trna modification gtpase trme;
PDBTitle: structure of the gtp-binding protein trme from thermotoga2 maritima complexed with 5-formyl-thf
26d1iwga6



not modelled 16.8 39
Fold:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Superfamily:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Family:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
27d1qwla_



not modelled 16.6 17
Fold:Heme-dependent catalase-like
Superfamily:Heme-dependent catalase-like
Family:Heme-dependent catalases
28c3qoqC_



not modelled 16.1 21
PDB header:transcription/dna
Chain: C: PDB Molecule:alginate and motility regulator z;
PDBTitle: crystal structure of the transcription factor amrz in complex with the2 18 base pair amrz1 binding site
29c3gehA_



not modelled 15.7 15
PDB header:hydrolase
Chain: A: PDB Molecule:trna modification gtpase mnme;
PDBTitle: crystal structure of mnme from nostoc in complex with gdp, folinic2 acid and zn
30d2eyqa6



not modelled 12.5 28
Fold:TRCF domain-like
Superfamily:TRCF domain-like
Family:TRCF domain
31d1wn0a1



not modelled 12.3 15
Fold:Four-helical up-and-down bundle
Superfamily:Histidine-containing phosphotransfer domain, HPT domain
Family:Phosphorelay protein-like
32d1e0ga_



not modelled 11.8 25
Fold:LysM domain
Superfamily:LysM domain
Family:LysM domain
33d1si8a_



not modelled 11.6 18
Fold:Heme-dependent catalase-like
Superfamily:Heme-dependent catalase-like
Family:Heme-dependent catalases
34c1ydiB_



not modelled 11.6 15
PDB header:cell adhesion, structural protein
Chain: B: PDB Molecule:alpha-actinin 4;
PDBTitle: human vinculin head domain (vh1, 1-258) in complex with2 human alpha-actinin's vinculin-binding site (residues 731-3 760)
35d2i1qa1



not modelled 11.0 17
Fold:SAM domain-like
Superfamily:Rad51 N-terminal domain-like
Family:DNA repair protein Rad51, N-terminal domain
36d1szpb1



not modelled 10.4 31
Fold:SAM domain-like
Superfamily:Rad51 N-terminal domain-like
Family:DNA repair protein Rad51, N-terminal domain
37c4g78A_



not modelled 10.1 18
PDB header:transferase
Chain: A: PDB Molecule:histidine phosphotransfer protein;
PDBTitle: subatomic resolution crystal structure of histidine-containing2 phosphotransfer protein mthpt2 from medicago truncatula
38c2qsrA_



not modelled 9.8 10
PDB header:transcription
Chain: A: PDB Molecule:transcription-repair coupling factor;
PDBTitle: crystal structure of c-terminal domain of transcription-repair2 coupling factor
39c3ci9B_



not modelled 9.8 20
PDB header:transcription
Chain: B: PDB Molecule:heat shock factor-binding protein 1;
PDBTitle: crystal structure of the human hsbp1
40d2ao9a1



not modelled 9.1 30
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Nanomeric phage protein-like
41c5tmxA_



not modelled 8.9 14
PDB header:transcription regulator
Chain: A: PDB Molecule:protein sini;
PDBTitle: solution structure of sini, antagonist to the master biofilm-regulator2 sinr in bacillus subtilis
42d1pzqa_



not modelled 7.9 33
Fold:Dimerisation interlock
Superfamily:Docking domain A of the erythromycin polyketide synthase (DEBS)
Family:Docking domain A of the erythromycin polyketide synthase (DEBS)
43c4huqT_



not modelled 7.8 17
PDB header:hydrolase
Chain: T: PDB Molecule:energy-coupling factor transporter transmembrane protein
PDBTitle: crystal structure of a transporter
44c4b9hA_



not modelled 7.8 21
PDB header:sugar binding protein
Chain: A: PDB Molecule:extracellular protein 6;
PDBTitle: cladosporium fulvum lysm effector ecp6 in complex with a2 beta-1,4-linked n-acetyl-d-glucosamine tetramer: i3c heavy3 atom derivative
45c3cqxD_



not modelled 7.7 15
PDB header:chaperone
Chain: D: PDB Molecule:bag family molecular chaperone regulator 2;
PDBTitle: chaperone complex
46c4rfsT_



not modelled 7.6 17
PDB header:hydrolase, transport protein
Chain: T: PDB Molecule:energy-coupling factor transporter transmembrane protein
PDBTitle: structure of a pantothenate energy coupling factor transporter
47d1rioa_



not modelled 7.6 21
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
48c6j5id_



not modelled 7.4 12
PDB header:membrane protein
Chain: D: PDB Molecule:atp synthase subunit beta;
PDBTitle: cryo-em structure of the mammalian dp-state atp synthase
49c2cpmA_



not modelled 7.3 11
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:sperm-associated antigen 7;
PDBTitle: solution structure of the r3h domain of human sperm-2 associated antigen 7
50c5t0fB_



not modelled 7.2 22
PDB header:transcription
Chain: B: PDB Molecule:protein tify 9;
PDBTitle: crystal structure of the myc3 n-terminal domain [44-242] in complex2 with jaz10 cmid domain [16-58] from arabidopsis
51d1pzna1



not modelled 7.2 17
Fold:SAM domain-like
Superfamily:Rad51 N-terminal domain-like
Family:DNA repair protein Rad51, N-terminal domain
52d1vcsa1



not modelled 7.0 10
Fold:STAT-like
Superfamily:t-snare proteins
Family:t-snare proteins
53c2mkxA_



not modelled 7.0 36
PDB header:hydrolase
Chain: A: PDB Molecule:autolysin;
PDBTitle: solution structure of lysm the peptidoglycan binding domain of2 autolysin atla from enterococcus faecalis
54d1y7ma2



not modelled 7.0 13
Fold:LysM domain
Superfamily:LysM domain
Family:LysM domain
55c4uetA_



not modelled 6.8 11
PDB header:retinol-binding protein
Chain: A: PDB Molecule:nematode fatty acid retinoid binding protein;
PDBTitle: diversity in the structures and ligand binding sites among2 the fatty acid and retinol binding proteins of nematodes3 revealed by na-far-1 from necator americanus
56d2h9da1



not modelled 6.7 25
Fold:Chorismate mutase II
Superfamily:Chorismate mutase II
Family:Dimeric chorismate mutase
57c6hwlB_



not modelled 6.6 14
PDB header:transferase
Chain: B: PDB Molecule:glucosamine kinase;
PDBTitle: glucosamine kinase in complex with glucosamine, adp and inorganic2 phosphate
58d1yvia1



not modelled 6.6 9
Fold:Four-helical up-and-down bundle
Superfamily:Histidine-containing phosphotransfer domain, HPT domain
Family:Phosphorelay protein-like
59c2dnxA_



not modelled 6.3 13
PDB header:transport protein
Chain: A: PDB Molecule:syntaxin-12;
PDBTitle: solution structure of rsgi ruh-063, an n-terminal domain of2 syntaxin 12 from human cdna
60c4awaA_



not modelled 6.3 43
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:legumain;
PDBTitle: crystal structure of active legumain in complex with yvad-cmk2 at ph 5.0
61c2ao9H_



not modelled 6.2 19
PDB header:structural genomics, unknown function
Chain: H: PDB Molecule:phage protein;
PDBTitle: structural genomics, the crystal structure of a phage protein2 (phbc6a51) from bacillus cereus atcc 14579
62c4bgoA_



not modelled 6.2 15
PDB header:hydrolase
Chain: A: PDB Molecule:efem m75 peptidase;
PDBTitle: structural and functional role of the imelysin-like protein2 efem from pseudomonas syringae pv. syringae and3 implications in bacterial iron transport
63c3kxyW_



not modelled 6.1 60
PDB header:chaperone/transcription inhibitor
Chain: W: PDB Molecule:exse;
PDBTitle: crystal structure of the exsc-exse complex
64c5tw7E_



not modelled 6.0 24
PDB header:ligase
Chain: E: PDB Molecule:gmp synthase [glutamine-hydrolyzing];
PDBTitle: crystal structure of a gmp synthase (glutamine-hydrolyzing) from2 neisseria gonorrhoeae
65c5k2lA_



not modelled 5.9 19
PDB header:hydrolase
Chain: A: PDB Molecule:chitinase, lysozyme;
PDBTitle: crystal structure of lysm domain from volvox carteri chitinase
66c5jceA_



not modelled 5.7 19
PDB header:sugar binding protein
Chain: A: PDB Molecule:chitin elicitor-binding protein;
PDBTitle: crystal structure of oscebip complex
67c2j2mD_



not modelled 5.7 7
PDB header:oxidoreductase
Chain: D: PDB Molecule:catalase;
PDBTitle: crystal structure analysis of catalase from exiguobacterium2 oxidotolerans
68d1p80a2



not modelled 5.7 14
Fold:Heme-dependent catalase-like
Superfamily:Heme-dependent catalase-like
Family:Heme-dependent catalases
69d1b22a_



not modelled 5.7 27
Fold:SAM domain-like
Superfamily:Rad51 N-terminal domain-like
Family:DNA repair protein Rad51, N-terminal domain
70c1b22A_



not modelled 5.7 27
PDB header:dna binding protein
Chain: A: PDB Molecule:dna repair protein rad51;
PDBTitle: rad51 (n-terminal domain)
71c3hrdF_



not modelled 5.6 15
PDB header:oxidoreductase
Chain: F: PDB Molecule:nicotinate dehydrogenase medium molybdopterin
PDBTitle: crystal structure of nicotinate dehydrogenase
72c5ziyB_



not modelled 5.5 15
PDB header:structural protein
Chain: B: PDB Molecule:flagellar hook-associated protein 3;
PDBTitle: crystal structure of bacillus cereus flgl
73c2msvA_



not modelled 5.5 16
PDB header:membrane protein
Chain: A: PDB Molecule:mixed lineage kinase domain-like protein;
PDBTitle: solution structure of the mlkl n-terminal domain
74c3bijC_



not modelled 5.4 80
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:uncharacterized protein gsu0716;
PDBTitle: crystal structure of protein gsu0716 from geobacter sulfurreducens.2 northeast structural genomics target gsr13
75c4afpA_



not modelled 5.3 67
PDB header:hydrolase
Chain: A: PDB Molecule:metacaspase mca2;
PDBTitle: the structure of metacaspase 2 from t. brucei determined in the2 presence of samarium
76c3pf0A_



not modelled 5.3 10
PDB header:unknown function
Chain: A: PDB Molecule:imelysin-like protein;
PDBTitle: crystal structure of an imelysin-like protein (psyc_1802) from2 psychrobacter arcticum 273-4 at 2.15 a resolution
77c4ua2B_



not modelled 5.2 14
PDB header:dna binding protein
Chain: B: PDB Molecule:regulatory protein;
PDBTitle: crystal structure of dual function transcriptional regulator merr from2 bacillus megaterium mb1
78c5o34C_



not modelled 5.2 16
PDB header:lyase
Chain: C: PDB Molecule:enoyl-coa hydratase carb homologue;
PDBTitle: thne from s.clavuligerus
79c4ad9E_



not modelled 5.1 21
PDB header:hydrolase
Chain: E: PDB Molecule:beta-lactamase-like protein 2;
PDBTitle: crystal structure of human lactb2.
80c3pmkP_



not modelled 5.1 44
PDB header:viral protein
Chain: P: PDB Molecule:phosphoprotein;
PDBTitle: crystal structure of the vesicular stomatitis virus rna free2 nucleoprotein/phosphoprotein complex
81c3pmkR_



not modelled 5.1 44
PDB header:viral protein
Chain: R: PDB Molecule:phosphoprotein;
PDBTitle: crystal structure of the vesicular stomatitis virus rna free2 nucleoprotein/phosphoprotein complex
82c4f6oA_



not modelled 5.1 80
PDB header:hydrolase
Chain: A: PDB Molecule:metacaspase-1;
PDBTitle: crystal structure of the yeast metacaspase yca1
83c5bumA_



not modelled 5.1 19
PDB header:sugar binding protein
Chain: A: PDB Molecule:chitinase a;
PDBTitle: crystal structure of lysm domain from equisetum arvense chitinase a
84c3pmkQ_



not modelled 5.0 44
PDB header:viral protein
Chain: Q: PDB Molecule:phosphoprotein;
PDBTitle: crystal structure of the vesicular stomatitis virus rna free2 nucleoprotein/phosphoprotein complex
85c3pmkN_



not modelled 5.0 44
PDB header:viral protein
Chain: N: PDB Molecule:phosphoprotein;
PDBTitle: crystal structure of the vesicular stomatitis virus rna free2 nucleoprotein/phosphoprotein complex

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite