Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3851_(-)_4324861_4325145
DateSat Aug 10 22:05:03 BST 2019
Unique Job IDefcdcdbccf2a0be7
SequenceMTAIGMSHPP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:32.332 Y:28.581 Z:27.107
Model (left) based on template c2kncA_
Top template information
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
Confidence and coverage
Confidence: 15.8% Coverage: 30%
28 residues ( 30% of your sequence) have been modelled with 15.8% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2kncA_



15.8 14
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
2c2amnA_



9.2 60
PDB header:antimicrobial protein
Chain: A: PDB Molecule:cathelicidin;
PDBTitle: solution structure of fowlicidin-1, a novel cathelicidin2 antimicrobial peptide from chicken
3c6b2zS_



9.1 40
PDB header:membrane protein
Chain: S: PDB Molecule:atp synthase subunit j, mitochondrial;
PDBTitle: cryo-em structure of the dimeric fo region of yeast mitochondrial atp2 synthase
4c6b2zi_



9.1 40
PDB header:membrane protein
Chain: I: PDB Molecule:atp synthase subunit c, mitochondrial;
PDBTitle: cryo-em structure of the dimeric fo region of yeast mitochondrial atp2 synthase
5c6gtrD_



5.7 36
PDB header:transcription
Chain: D: PDB Molecule:duf1778 domain-containing protein;
PDBTitle: structure of the atat y144f mutant toxin bound to the c-terminus of2 the antitoxin atar and acetyl-coa
6d1q90l_



5.2 53
Fold:Single transmembrane helix
Superfamily:PetL subunit of the cytochrome b6f complex
Family:PetL subunit of the cytochrome b6f complex

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite