Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3852_(hns)_4325252_4325656
DateSat Aug 10 22:05:03 BST 2019
Unique Job ID7613b6f20c76164f
SequenceMPDPQDRPDS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:24.916 Y:40.073 Z:20.782
Model (left) based on template c2lonA_
Top template information
PDB header:membrane protein
Chain: A: PDB Molecule:hig1 domain family member 1b;
PDBTitle: backbone structure of human membrane protein higd1b
Confidence and coverage
Confidence: 34.5% Coverage: 18%
24 residues ( 18% of your sequence) have been modelled with 34.5% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
Warning: 83% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2lonA_
34.5 29
PDB header:membrane protein
Chain: A: PDB Molecule:hig1 domain family member 1b;
PDBTitle: backbone structure of human membrane protein higd1b
2c2lomA_
33.2 17
PDB header:membrane protein
Chain: A: PDB Molecule:hig1 domain family member 1a;
PDBTitle: backbone structure of human membrane protein higd1a
3c6ithA_
26.3 42
PDB header:membrane protein
Chain: A: PDB Molecule:syndecan-2;
PDBTitle: structure of the transmembrane domain of syndecan 2 in micelles
4c2cq8A_
22.2 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:10-formyltetrahydrofolate dehydrogenase;
PDBTitle: solution structure of rsgi ruh-033, a pp-binding domain of2 10-fthfdh from human cdna
5c5mtiA_
10.0 50
PDB header:transport protein
Chain: A: PDB Molecule:phosphopantetheine-binding protein;
PDBTitle: bamb_5917 acyl-carrier protein
6c5xsyB_
9.0 10
PDB header:membrane protein
Chain: B: PDB Molecule:voltage-gated sodium channel beta subunit 1;
PDBTitle: structure of the nav1.4-beta1 complex from electric eel
7c2o01J_
8.5 35
PDB header:photosynthesis
Chain: J: PDB Molecule:photosystem i reaction center subunit ix;
PDBTitle: the structure of a plant photosystem i supercomplex at 3.4 angstrom2 resolution
8c6igzJ_
8.3 43
PDB header:plant protein
Chain: J: PDB Molecule:psaj;
PDBTitle: structure of psi-lhci
9d2pnga1
8.2 29
Fold:Acyl carrier protein-like
Superfamily:ACP-like
Family:Acyl-carrier protein (ACP)
10c2mr7A_
7.8 43
PDB header:biosynthetic protein
Chain: A: PDB Molecule:non-ribosomal peptide synthetase;
PDBTitle: apo structure of the peptidyl carrier protein domain 7 of the2 teicoplanin producing non-ribosomal peptide synthetase
11c2roqA_
6.6 50
PDB header:transferase
Chain: A: PDB Molecule:enterobactin synthetase component f;
PDBTitle: solution structure of the thiolation-thioesterase di-domain2 of enterobactin synthetase component f
12c3w1sB_
6.3 46
PDB header:ligase
Chain: B: PDB Molecule:autophagy protein 16;
PDBTitle: crystal structure of saccharomyces cerevisiae atg12-atg5 conjugate2 bound to the n-terminal domain of atg16
13d2gnoa1
6.3 40
Fold:post-AAA+ oligomerization domain-like
Superfamily:post-AAA+ oligomerization domain-like
Family:DNA polymerase III clamp loader subunits, C-terminal domain
14c2dymH_
6.3 46
PDB header:protein turnover/protein turnover
Chain: H: PDB Molecule:autophagy protein 16;
PDBTitle: the crystal structure of saccharomyces cerevisiae atg5-2 atg16(1-46) complex
15c2dymD_
6.3 46
PDB header:protein turnover/protein turnover
Chain: D: PDB Molecule:autophagy protein 16;
PDBTitle: the crystal structure of saccharomyces cerevisiae atg5-2 atg16(1-46) complex
16c2dymF_
6.3 46
PDB header:protein turnover/protein turnover
Chain: F: PDB Molecule:autophagy protein 16;
PDBTitle: the crystal structure of saccharomyces cerevisiae atg5-2 atg16(1-46) complex
17c2dymB_
6.3 46
PDB header:protein turnover/protein turnover
Chain: B: PDB Molecule:autophagy protein 16;
PDBTitle: the crystal structure of saccharomyces cerevisiae atg5-2 atg16(1-46) complex
18d1hrua_
5.5 20
Fold:YrdC/RibB
Superfamily:YrdC/RibB
Family:YrdC-like
19c2m59A_
5.3 33
PDB header:transferase
Chain: A: PDB Molecule:vascular endothelial growth factor receptor 2;
PDBTitle: spatial structure of dimeric vegfr2 membrane domain in dpc micelles
20c2m59B_
5.3 33
PDB header:transferase
Chain: B: PDB Molecule:vascular endothelial growth factor receptor 2;
PDBTitle: spatial structure of dimeric vegfr2 membrane domain in dpc micelles
21c4pxhF_
not modelled 5.3 36
PDB header:oxidoreductase/protein binding
Chain: F: PDB Molecule:peptide synthetase;
PDBTitle: structure of p450sky (cyp163b3), a cytochrome p450 from skyllamycin2 biosynthesis in complex with a peptidyl carrier protein domain
22c2dyoB_
not modelled 5.3 46
PDB header:protein turnover/protein turnover
Chain: B: PDB Molecule:autophagy protein 16;
PDBTitle: the crystal structure of saccharomyces cerevisiae atg5-2 atg16(1-57) complex

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below