Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3853_(menG)_4325673_4326146
DateSat Aug 10 22:05:03 BST 2019
Unique Job IDd41279bee7a2b93e
SequenceVAISFRPTAD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:33.016 Y:45.125 Z:29.970
Model (left) based on template c1nxjA_
Top template information
PDB header:unknown function
Chain: A: PDB Molecule:probable s-adenosylmethionine:2-
PDBTitle: structure of rv3853 from mycobacterium tuberculosis
Confidence and coverage
Confidence:100.0% Coverage: 99%
156 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1nxjA_



100.0 100
PDB header:unknown function
Chain: A: PDB Molecule:probable s-adenosylmethionine:2-
PDBTitle: structure of rv3853 from mycobacterium tuberculosis
2d1nxja_



100.0 100
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:RraA-like
Family:RraA-like
3c2pcnA_



100.0 44
PDB header:transferase
Chain: A: PDB Molecule:s-adenosylmethionine:2-demethylmenaquinone
PDBTitle: crystal structure of s-adenosylmethionine: 2-dimethylmenaquinone2 methyltransferase (gk_1813) from geobacillus kaustophilus hta426
4d1vi4a_



100.0 47
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:RraA-like
Family:RraA-like
5d1q5xa_



100.0 45
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:RraA-like
Family:RraA-like
6c3c8oB_



100.0 44
PDB header:hydrolase regulator
Chain: B: PDB Molecule:regulator of ribonuclease activity a;
PDBTitle: the crystal structure of rraa from pao1
7c3nojA_



100.0 27
PDB header:lyase
Chain: A: PDB Molecule:4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate
PDBTitle: the structure of hmg/cha aldolase from the protocatechuate degradation2 pathway of pseudomonas putida
8d1j3la_



100.0 45
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:RraA-like
Family:RraA-like
9c5ir2A_



100.0 19
PDB header:hydrolase
Chain: A: PDB Molecule:cellulase;
PDBTitle: crystal structure of novel cellulases from microbes associated with2 the gut ecosystem
10c3k4iC_



100.0 21
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of uncharacterized protein pspto_3204 from2 pseudomonas syringae pv. tomato str. dc3000
11c5x15C_



100.0 28
PDB header:transferase inhibitor
Chain: C: PDB Molecule:putative transferase;
PDBTitle: crystal structure of streptomyces coelicolor rraas2, an unusual member2 of the rnase es inhibitor rraa protein family
12c2c5qE_



100.0 20
PDB header:structural genomics,unknown function
Chain: E: PDB Molecule:rraa-like protein yer010c;
PDBTitle: crystal structure of yeast yer010cp
13d2gp4a1



72.3 17
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:LeuD/IlvD-like
Family:IlvD/EDD C-terminal domain-like
14c2gp4A_



70.7 16
PDB header:lyase
Chain: A: PDB Molecule:6-phosphogluconate dehydratase;
PDBTitle: structure of [fes]cluster-free apo form of 6-phosphogluconate2 dehydratase from shewanella oneidensis
15c2gp4B_



66.8 16
PDB header:lyase
Chain: B: PDB Molecule:6-phosphogluconate dehydratase;
PDBTitle: structure of [fes]cluster-free apo form of 6-phosphogluconate2 dehydratase from shewanella oneidensis
16c6ovtD_



56.9 18
PDB header:lyase
Chain: D: PDB Molecule:dihydroxy-acid dehydratase;
PDBTitle: crystal structure of ilvd from mycobacterium tuberculosis
17c5j84A_



55.7 14
PDB header:lyase
Chain: A: PDB Molecule:dihydroxy-acid dehydratase;
PDBTitle: crystal structure of l-arabinonate dehydratase in holo-form
18c5oynB_



53.1 20
PDB header:lyase
Chain: B: PDB Molecule:dehydratase, ilvd/edd family;
PDBTitle: crystal structure of d-xylonate dehydratase in holo-form
19d1kbla2



48.9 23
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:Phosphohistidine domain
Family:Pyruvate phosphate dikinase, central domain
20c5ze4A_



48.4 26
PDB header:lyase
Chain: A: PDB Molecule:dihydroxy-acid dehydratase, chloroplastic;
PDBTitle: the structure of holo- structure of dhad complex with [2fe-2s] cluster
21c5hdjA_



not modelled 47.2 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:nfra1;
PDBTitle: structure of b. megaterium nfra1
22c5ym0A_



not modelled 45.8 26
PDB header:lyase
Chain: A: PDB Molecule:dihydroxy-acid dehydratase, chloroplastic;
PDBTitle: the crystal structure of dhad
23d1f5va_



not modelled 44.4 21
Fold:FMN-dependent nitroreductase-like
Superfamily:FMN-dependent nitroreductase-like
Family:NADH oxidase/flavin reductase
24c3n2sD_



not modelled 41.6 15
PDB header:oxidoreductase
Chain: D: PDB Molecule:nadph-dependent nitro/flavin reductase;
PDBTitle: structure of nfra1 nitroreductase from b. subtilis
25d1e8ca2



not modelled 41.2 20
Fold:MurD-like peptide ligases, peptide-binding domain
Superfamily:MurD-like peptide ligases, peptide-binding domain
Family:MurCDEF C-terminal domain
26d1zcha1



not modelled 39.2 10
Fold:FMN-dependent nitroreductase-like
Superfamily:FMN-dependent nitroreductase-like
Family:NADH oxidase/flavin reductase
27d1vfga2



not modelled 32.7 35
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Poly A polymerase head domain-like
28c5heiE_



not modelled 32.7 15
PDB header:oxidoreductase
Chain: E: PDB Molecule:nfra2;
PDBTitle: structure of b. megaterium nfra2
29c3eofB_



not modelled 32.4 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative oxidoreductase;
PDBTitle: crystal structure of putative oxidoreductase (yp_213212.1) from2 bacteroides fragilis nctc 9343 at 1.99 a resolution
30d1bkja_



not modelled 32.3 18
Fold:FMN-dependent nitroreductase-like
Superfamily:FMN-dependent nitroreductase-like
Family:NADH oxidase/flavin reductase
31c1vfgB_



not modelled 31.7 35
PDB header:transferase/rna
Chain: B: PDB Molecule:poly a polymerase;
PDBTitle: crystal structure of trna nucleotidyltransferase complexed2 with a primer trna and an incoming atp analog
32c1ou5A_



not modelled 30.8 36
PDB header:translation, transferase
Chain: A: PDB Molecule:trna cca-adding enzyme;
PDBTitle: crystal structure of human cca-adding enzyme
33c1dbgA_



not modelled 27.4 20
PDB header:lyase
Chain: A: PDB Molecule:chondroitinase b;
PDBTitle: crystal structure of chondroitinase b
34d1ofla_



not modelled 26.9 26
Fold:Single-stranded right-handed beta-helix
Superfamily:Pectin lyase-like
Family:Chondroitinase B
35d1vbga2



not modelled 26.9 13
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:Phosphohistidine domain
Family:Pyruvate phosphate dikinase, central domain
36c2vpiA_



not modelled 25.8 24
PDB header:ligase
Chain: A: PDB Molecule:gmp synthase;
PDBTitle: human gmp synthetase - glutaminase domain
37d1ou5a2



not modelled 25.7 36
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Poly A polymerase head domain-like
38d1miwa2



not modelled 19.3 36
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Poly A polymerase head domain-like
39c6odm5_



not modelled 17.3 33
PDB header:viral protein
Chain: 5: PDB Molecule:triplex capsid protein 1;
PDBTitle: herpes simplex virus type 1 (hsv-1) portal vertex-adjacent2 capsid/catc, asymmetric unit
40c4x4wB_



not modelled 15.3 36
PDB header:rna binding protein
Chain: B: PDB Molecule:cca trna nucleotidyltransferase 1, mitochondrial;
PDBTitle: crystal structure of the full-length human mitochondrial cca-adding2 enzyme
41c3aqnA_



not modelled 15.1 27
PDB header:transferase
Chain: A: PDB Molecule:poly(a) polymerase;
PDBTitle: complex structure of bacterial protein (apo form ii)
42c5gkdA_



not modelled 14.9 8
PDB header:lyase
Chain: A: PDB Molecule:alygc;
PDBTitle: structure of pl6 family alginate lyase alygc
43c1e8cB_



not modelled 14.1 20
PDB header:ligase
Chain: B: PDB Molecule:udp-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate
PDBTitle: structure of mure the udp-n-acetylmuramyl tripeptide synthetase from2 e. coli
44c3mvnA_



not modelled 13.9 18
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl-medo-
PDBTitle: crystal structure of a domain from a putative udp-n-acetylmuramate:l-2 alanyl-gamma-d-glutamyl-medo-diaminopimelate ligase from haemophilus3 ducreyi 35000hp
45d1vzwa1



not modelled 13.7 17
Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Histidine biosynthesis enzymes
46c3h37B_



not modelled 12.9 21
PDB header:transferase
Chain: B: PDB Molecule:trna nucleotidyl transferase-related protein;
PDBTitle: the structure of cca-adding enzyme apo form i
47c3l7oB_



not modelled 12.6 12
PDB header:isomerase
Chain: B: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-phosphate isomerase a from streptococcus2 mutans ua159
48c3tbiB_



not modelled 11.1 33
PDB header:transcription
Chain: B: PDB Molecule:dna-directed rna polymerase subunit beta;
PDBTitle: crystal structure of t4 gp33 bound to e. coli rnap beta-flap domain
49c6q52A_



not modelled 10.8 36
PDB header:rna binding protein
Chain: A: PDB Molecule:cca-adding enzyme;
PDBTitle: structure of a psychrophilic cca-adding enzyme in complex with cmpcpp2 at room temperature in chipx microfluidic device
50c3bm2B_



not modelled 10.7 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:protein ydja;
PDBTitle: crystal structure of a minimal nitroreductase ydja from escherichia2 coli k12 with and without fmn cofactor
51c2pjmA_



not modelled 10.4 15
PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: structure of ribose 5-phosphate isomerase a from2 methanocaldococcus jannaschii
52d1thfd_



not modelled 10.2 8
Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Histidine biosynthesis enzymes
53c3k6hB_



not modelled 10.2 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:nitroreductase family protein;
PDBTitle: crystal structure of a nitroreductase family protein from2 agrobacterium tumefaciens str. c58
54c2xrfA_



not modelled 9.5 38
PDB header:transferase
Chain: A: PDB Molecule:uridine phosphorylase 2;
PDBTitle: crystal structure of human uridine phosphorylase 2
55c1y43B_



not modelled 9.3 21
PDB header:hydrolase
Chain: B: PDB Molecule:aspergillopepsin ii heavy chain;
PDBTitle: crystal structure of aspergilloglutamic peptidase from aspergillus2 niger
56c3i28A_



not modelled 8.8 15
PDB header:hydrolase
Chain: A: PDB Molecule:epoxide hydrolase 2;
PDBTitle: crystal structure of soluble epoxide hydrolase
57d1i1qb_



not modelled 8.6 25
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
58c1miyB_



not modelled 8.5 36
PDB header:translation, transferase
Chain: B: PDB Molecule:trna cca-adding enzyme;
PDBTitle: crystal structure of bacillus stearothermophilus cca-adding enzyme in2 complex with ctp
59d1ka9f_



not modelled 8.4 11
Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Histidine biosynthesis enzymes
60c5z9tB_



not modelled 8.2 26
PDB header:lyase
Chain: B: PDB Molecule:alginate lyase alyf-ou02;
PDBTitle: a new pl6 alginate lyase complex with trisaccharide
61c2wzvB_



not modelled 7.6 8
PDB header:oxidoreductase
Chain: B: PDB Molecule:nfnb protein;
PDBTitle: crystal structure of the fmn-dependent nitroreductase nfnb2 from mycobacterium smegmatis
62d3bi1a2



not modelled 7.5 16
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:PA domain
Family:PA domain
63c2xjaD_



not modelled 7.4 20
PDB header:ligase
Chain: D: PDB Molecule:udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2,6-
PDBTitle: structure of mure from m.tuberculosis with dipeptide and adp
64c3cioA_



not modelled 7.4 22
PDB header:signaling protein, transferase
Chain: A: PDB Molecule:tyrosine-protein kinase etk;
PDBTitle: the kinase domain of escherichia coli tyrosine kinase etk
65c2lktA_



not modelled 6.9 32
PDB header:hydrolase
Chain: A: PDB Molecule:retinoic acid receptor responder protein 3;
PDBTitle: solution structure of n-terminal domain of human tig3 in 2 m urea
66c1vdzA_



not modelled 6.9 21
PDB header:hydrolase
Chain: A: PDB Molecule:a-type atpase subunit a;
PDBTitle: crystal structure of a-type atpase catalytic subunit a from2 pyrococcus horikoshii ot3
67c4gmkB_



not modelled 6.9 15
PDB header:isomerase
Chain: B: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose 5-phosphate isomerase from the probiotic2 bacterium lactobacillus salivarius ucc118
68d1j5ya1



not modelled 6.8 38
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Biotin repressor-like
69c6cslA_



not modelled 6.6 30
PDB header:metal binding protein
Chain: A: PDB Molecule:histidine triad protein d;
PDBTitle: pneumococcal phtd protein 269-339 fragment with bound zn(ii)
70c1gqqA_



not modelled 6.5 22
PDB header:cell wall biosynthesis
Chain: A: PDB Molecule:udp-n-acetylmuramate-l-alanine ligase;
PDBTitle: murc - crystal structure of the apo-enzyme from haemophilus influenzae
71d2cs7a1



not modelled 6.5 35
Fold:IL8-like
Superfamily:PhtA domain-like
Family:PhtA domain-like
72c3mogA_



not modelled 6.2 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:probable 3-hydroxybutyryl-coa dehydrogenase;
PDBTitle: crystal structure of 3-hydroxybutyryl-coa dehydrogenase from2 escherichia coli k12 substr. mg1655
73d1bvp12



not modelled 6.1 30
Fold:Viral protein domain
Superfamily:Viral protein domain
Family:Top domain of virus capsid protein
74d1ahsa_



not modelled 6.0 22
Fold:Viral protein domain
Superfamily:Viral protein domain
Family:Top domain of virus capsid protein
75c6iunB_



not modelled 5.9 7
PDB header:oxidoreductase
Chain: B: PDB Molecule:enoyl-coa hydratase/delta(3)-cis-delta(2)-trans-enoyl-coa
PDBTitle: crystal structure of enoyl-coa hydratase (ech) from ralstonia eutropha2 h16 in complex with nad
76c2kytA_



not modelled 5.9 24
PDB header:hydrolase
Chain: A: PDB Molecule:group xvi phospholipase a2;
PDBTitle: solution structure of the h-rev107 n-terminal domain
77c2d3tB_



not modelled 5.7 12
PDB header:lyase, oxidoreductase/transferase
Chain: B: PDB Molecule:fatty oxidation complex alpha subunit;
PDBTitle: fatty acid beta-oxidation multienzyme complex from2 pseudomonas fragi, form v
78d1eara1



not modelled 5.6 35
Fold:Urease metallochaperone UreE, N-terminal domain
Superfamily:Urease metallochaperone UreE, N-terminal domain
Family:Urease metallochaperone UreE, N-terminal domain
79c3bemA_



not modelled 5.5 27
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative nad(p)h nitroreductase ydfn;
PDBTitle: crystal structure of putative nitroreductase ydfn (2632848) from2 bacillus subtilis at 1.65 a resolution
80c4ifdI_



not modelled 5.5 56
PDB header:hydrolase/rna
Chain: I: PDB Molecule:exosome complex component csl4;
PDBTitle: crystal structure of an 11-subunit eukaryotic exosome complex bound to2 rna
81c1zcjA_



not modelled 5.2 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:peroxisomal bifunctional enzyme;
PDBTitle: crystal structure of 3-hydroxyacyl-coa dehydrogenase

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