Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3866_(-)_4342058_4342909
DateSat Aug 10 22:05:05 BST 2019
Unique Job IDf096195a68ebc5bb
SequenceMTGPSAAGRA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:72.620 Y:41.949 Z:44.881
Model (left) based on template c5vbaA_
Top template information
PDB header:chaperone, hydrolase
Chain: A: PDB Molecule:lysozyme, esx-1 secretion-associated protein espg1 chimera;
PDBTitle: structure of espg1 chaperone from the type vii (esx-1) secretion2 system determined with the assistance of n-terminal t4 lysozyme3 fusion
Confidence and coverage
Confidence:100.0% Coverage: 85%
240 residues ( 85% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5vbaA_



100.0 80
PDB header:chaperone, hydrolase
Chain: A: PDB Molecule:lysozyme, esx-1 secretion-associated protein espg1 chimera;
PDBTitle: structure of espg1 chaperone from the type vii (esx-1) secretion2 system determined with the assistance of n-terminal t4 lysozyme3 fusion
2c4l4wB_



100.0 27
PDB header:protein transport
Chain: B: PDB Molecule:espg3;
PDBTitle: structure of espg3 chaperone from the type vii (esx-3) secretion2 system
3c4w4iA_



100.0 24
PDB header:protein transport
Chain: A: PDB Molecule:esx-3 secretion-associated protein espg3;
PDBTitle: crystal structure of espg3 from the esx-3 type vii secretion system of2 m. tuberculosis
4c4kxrC_



100.0 23
PDB header:protein transport
Chain: C: PDB Molecule:espg5;
PDBTitle: structure of the mycobacterium tuberculosis type vii secretion system2 chaperone espg5 in complex with pe25-ppe41 dimer
5c4rclB_



100.0 28
PDB header:chaperone
Chain: B: PDB Molecule:espg3;
PDBTitle: structure of espg3 chaperone from the type vii (esx-3) secretion2 system, space group p43212
6c2l3aA_



19.6 12
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of homodimer protein sp_0782 (7-79) from2 streptococcus pneumoniae northeast structural genomics consortium3 target spr104 .
7c5w4zA_



16.1 23
PDB header:flavoprotein
Chain: A: PDB Molecule:riboflavin lyase;
PDBTitle: crystal structure of riboflavin lyase (rcae) with modified fmn and2 substrate riboflavin
8c3u5gK_



15.0 24
PDB header:ribosome
Chain: K: PDB Molecule:40s ribosomal protein s10-a;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution. this2 entry contains proteins of the 40s subunit, ribosome b
9c2v4oB_



14.3 23
PDB header:hydrolase
Chain: B: PDB Molecule:multifunctional protein sur e;
PDBTitle: crystal structure of salmonella typhimurium sure at 2.752 angstrom resolution in monoclinic form
10d1qnta1



13.3 21
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Methylated DNA-protein cysteine methyltransferase, C-terminal domain
Family:Methylated DNA-protein cysteine methyltransferase, C-terminal domain
11c3pm7A_



12.4 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of ef_3132 protein from enterococcus faecalis at the2 resolution 2a, northeast structural genomics consortium target efr184
12c4u5pA_



12.0 26
PDB header:isomerase
Chain: A: PDB Molecule:rhcc;
PDBTitle: crystal structure of native rhcc (yp_702633.1) from rhodococcus jostii2 rha1 at 1.78 angstrom
13c2ltdA_



11.7 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ydbc;
PDBTitle: solution nmr structure of apo ydbc from lactococcus lactis, northeast2 structural genomics consortium (nesg) target kr150
14c2vxhF_



10.0 6
PDB header:oxidoreductase
Chain: F: PDB Molecule:chlorite dismutase;
PDBTitle: the crystal structure of chlorite dismutase: a detox enzyme2 producing molecular oxygen
15d1g26a_



9.2 63
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Granulin repeat
Family:Granulin repeat
16c3obhA_



8.9 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: x-ray crystal structure of protein sp_0782 (7-79) from streptococcus2 pneumoniae. northeast structural genomics consortium target spr104
17c5craB_



8.7 43
PDB header:hydrolase
Chain: B: PDB Molecule:sdea;
PDBTitle: structure of the sdea dub domain
18c3jcmK_



8.5 17
PDB header:transcription
Chain: K: PDB Molecule:u4/u6 small nuclear ribonucleoprotein prp3;
PDBTitle: cryo-em structure of the spliceosomal u4/u6.u5 tri-snrnp
19c2x5kO_



8.4 18
PDB header:oxidoreductase
Chain: O: PDB Molecule:d-erythrose-4-phosphate dehydrogenase;
PDBTitle: structure of an active site mutant of the d-erythrose-4-phosphate2 dehydrogenase from e. coli
20c4dibF_



8.3 18
PDB header:oxidoreductase
Chain: F: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase;
PDBTitle: the crystal structure of glyceraldehyde-3-phosphate dehydrogenase from2 bacillus anthracis str. sterne
21c5jyfB_



not modelled 8.3 9
PDB header:oxidoreductase
Chain: B: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: structures of streptococcus agalactiae gbs gapdh in different2 enzymatic states
22c5a13J_



not modelled 8.1 9
PDB header:oxidoreductase
Chain: J: PDB Molecule:chlorite dismutase;
PDBTitle: crystal structure of chlorite dismutase from2 magnetospirillum sp. in complex with thiocyanate
23c2kimA_



not modelled 8.0 10
PDB header:transferase
Chain: A: PDB Molecule:o6-methylguanine-dna methyltransferase;
PDBTitle: 1.7-mm microcryoprobe solution nmr structure of an o6-methylguanine2 dna methyltransferase family protein from vibrio parahaemolyticus.3 northeast structural genomics consortium target vpr247.
24c2i5pO_



not modelled 7.9 18
PDB header:oxidoreductase
Chain: O: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase 1;
PDBTitle: crystal structure of glyceraldehyde-3-phosphate2 dehydrogenase isoform 1 from k. marxianus
25c4qx6A_



not modelled 7.8 9
PDB header:oxidoreductase
Chain: A: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase;
PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase from2 streptococcus agalactiae nem316 at 2.46 angstrom resolution
26c1obfO_



not modelled 7.6 18
PDB header:glycolytic pathway
Chain: O: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase;
PDBTitle: the crystal structure of glyceraldehyde 3-phosphate2 dehydrogenase from alcaligenes xylosoxidans at 1.7 a3 resolution.
27c5ur0B_



not modelled 7.5 18
PDB header:oxidoreductase
Chain: B: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: crystallographic structure of glyceraldehyde-3-phosphate dehydrogenase2 from naegleria gruberi
28c3hq4R_



not modelled 7.4 18
PDB header:oxidoreductase
Chain: R: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase 1;
PDBTitle: crystal structure of c151s mutant of glyceraldehyde-3-phosphate2 dehydrogenase 1 (gapdh1) complexed with nad from staphylococcus3 aureus mrsa252 at 2.2 angstrom resolution
29c1s7cA_



not modelled 7.4 18
PDB header:structural genomics, oxidoreductase
Chain: A: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase a;
PDBTitle: crystal structure of mes buffer bound form of glyceraldehyde 3-2 phosphate dehydrogenase from escherichia coli
30c5ld5C_



not modelled 7.4 9
PDB header:oxidoreductase
Chain: C: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: crystal structure of a bacterial dehydrogenase at 2.19 angstroms2 resolution
31c2b4rQ_



not modelled 7.4 18
PDB header:oxidoreductase
Chain: Q: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase from2 plasmodium falciparum at 2.25 angstrom resolution reveals intriguing3 extra electron density in the active site
32c3c6vB_



not modelled 7.3 22
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:probable tautomerase/dehalogenase au4130;
PDBTitle: crystal structure of au4130/apc7354, a probable enzyme from the2 thermophilic fungus aspergillus fumigatus
33c3h9eO_



not modelled 7.3 18
PDB header:oxidoreductase
Chain: O: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase, testis-specific;
PDBTitle: crystal structure of human sperm-specific glyceraldehyde-3-phosphate2 dehydrogenase (gapds) complex with nad and phosphate
34c2ep7B_



not modelled 7.3 27
PDB header:oxidoreductase
Chain: B: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: structural study of project id aq_1065 from aquifex aeolicus vf5
35c3cieC_



not modelled 7.2 18
PDB header:oxidoreductase
Chain: C: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: crystal structure of glyceraldehyde 3-phosphate2 dehydrogenase from cryptosporidium parvum
36c1hdgO_



not modelled 7.2 27
PDB header:oxidoreductase (aldehy(d)-nad(a))
Chain: O: PDB Molecule:holo-d-glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: the crystal structure of holo-glyceraldehyde-3-phosphate dehydrogenase2 from the hyperthermophilic bacterium thermotoga maritima at 2.53 angstroms resolution
37c2d2iO_



not modelled 7.0 18
PDB header:oxidoreductase
Chain: O: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase;
PDBTitle: crystal structure of nadp-dependent glyceraldehyde-3-2 phosphate dehydrogenase from synechococcus sp. complexed3 with nadp+
38c1cerC_



not modelled 7.0 18
PDB header:oxidoreductase (aldehyde(d)-nad(a))
Chain: C: PDB Molecule:holo-d-glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: determinants of enzyme thermostability observed in the2 molecular structure of thermus aquaticus d-glyceraldehyde-3 3-phosphate dehydrogenase at 2.5 angstroms resolution
39c5j9gB_



not modelled 7.0 9
PDB header:oxidoreductase
Chain: B: PDB Molecule:glyceraldehyde-3-p dehydrogenase;
PDBTitle: structure of lactobacillus acidophilus glyceraldehyde-3-phosphate2 dehydrogenase at 2.21 angstrom resolution
40c3docD_



not modelled 6.9 18
PDB header:oxidoreductase
Chain: D: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase;
PDBTitle: crystal structure of trka glyceraldehyde-3-phosphate dehydrogenase2 from brucella melitensis
41c2pkrI_



not modelled 6.9 18
PDB header:oxidoreductase
Chain: I: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase aor;
PDBTitle: crystal structure of (a+cte)4 chimeric form of photosyntetic2 glyceraldehyde-3-phosphate dehydrogenase, complexed with nadp
42d1ea0a3



not modelled 6.9 18
Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Class II glutamine amidotransferases
43c3b20R_



not modelled 6.9 18
PDB header:oxidoreductase
Chain: R: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase (nadp+);
PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase2 complexed with nadfrom synechococcus elongatus"
44c1ihxD_



not modelled 6.8 18
PDB header:oxidoreductase
Chain: D: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase;
PDBTitle: crystal structure of two d-glyceraldehyde-3-phosphate2 dehydrogenase complexes: a case of asymmetry
45c6ok4A_



not modelled 6.8 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase (gapdh)2 from chlamydia trachomatis with bound nad
46c1rm4O_



not modelled 6.7 18
PDB header:oxidoreductase
Chain: O: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase a;
PDBTitle: crystal structure of recombinant photosynthetic glyceraldehyde-3-2 phosphate dehydrogenase a4 isoform, complexed with nadp
47c2gfqC_



not modelled 6.7 24
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:upf0204 protein ph0006;
PDBTitle: structure of protein of unknown function ph0006 from pyrococcus2 horikoshii
48c1i32D_



not modelled 6.7 9
PDB header:oxidoreductase
Chain: D: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase;
PDBTitle: leishmania mexicana glyceraldehyde-3-phosphate2 dehydrogenase in complex with inhibitors
49c3hjaB_



not modelled 6.7 18
PDB header:oxidoreductase
Chain: B: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase from2 borrelia burgdorferi
50c4rdkB_



not modelled 6.3 21
PDB header:viral protein
Chain: B: PDB Molecule:capsid;
PDBTitle: crystal structure of norovirus boxer p domain in complex with lewis b2 tetrasaccharide
51c3i4jC_



not modelled 6.3 16
PDB header:transferase
Chain: C: PDB Molecule:aminotransferase, class iii;
PDBTitle: crystal structure of aminotransferase, class iii from deinococcus2 radiodurans
52c3sthA_



not modelled 6.3 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase from2 toxoplasma gondii
53d1l3ac_



not modelled 6.2 26
Fold:ssDNA-binding transcriptional regulator domain
Superfamily:ssDNA-binding transcriptional regulator domain
Family:Plant transcriptional regulator PBF-2
54d2glia4



not modelled 6.2 31
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
55c4qyjD_



not modelled 6.0 15
PDB header:oxidoreductase
Chain: D: PDB Molecule:aldehyde dehydrogenase;
PDBTitle: structure of phenylacetaldehyde dehydrogenase from pseudomonas putida2 s12
56c3gx4X_



not modelled 5.9 10
PDB header:dna binding protein/dna
Chain: X: PDB Molecule:alkyltransferase-like protein 1;
PDBTitle: crystal structure analysis of s. pombe atl in complex with dna
57d1mgta1



not modelled 5.7 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Methylated DNA-protein cysteine methyltransferase, C-terminal domain
Family:Methylated DNA-protein cysteine methyltransferase, C-terminal domain
58c3h8dC_



not modelled 5.2 24
PDB header:motor protein/signaling protein
Chain: C: PDB Molecule:myosin-vi;
PDBTitle: crystal structure of myosin vi in complex with dab2 peptide
59c4r8aF_



not modelled 5.2 21
PDB header:hydrolase/dna
Chain: F: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of pafan1 - 5' flap dna complex

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