Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3872_(PE35)_4350923_4351222
DateSat Aug 10 22:05:05 BST 2019
Unique Job ID67e16d599860d5e1
SequenceMEKMSHDPIA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:30.676 Y:20.267 Z:48.789
Model (left) based on template c2g38A_
Top template information
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:pe family protein;
PDBTitle: a pe/ppe protein complex from mycobacterium tuberculosis
Confidence and coverage
Confidence: 95.4% Coverage: 56%
55 residues ( 56% of your sequence) have been modelled with 95.4% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
83 residues ( 84%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2g38A_



95.4 24
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:pe family protein;
PDBTitle: a pe/ppe protein complex from mycobacterium tuberculosis
2d2g38a1



95.4 24
Fold:Ferritin-like
Superfamily:PE/PPE dimer-like
Family:PE
3c5xfsA_



95.1 31
PDB header:protein transport
Chain: A: PDB Molecule:pe family protein pe8;
PDBTitle: crystal structure of pe8-ppe15 in complex with espg5 from m.2 tuberculosis
4c4wj2A_



91.9 17
PDB header:unknown function
Chain: A: PDB Molecule:antigen mtb48;
PDBTitle: mycobacterial protein
5c2r18A_



32.6 25
PDB header:viral protein
Chain: A: PDB Molecule:capsid assembly protein vp3;
PDBTitle: structural insights into the multifunctional protein vp3 of2 birnaviruses
6d1wa8b1



31.2 12
Fold:Ferritin-like
Superfamily:EsxAB dimer-like
Family:ESAT-6 like
7d1wa8a1



30.4 15
Fold:Ferritin-like
Superfamily:EsxAB dimer-like
Family:ESAT-6 like
8c3hgkE_



22.0 22
PDB header:transferase
Chain: E: PDB Molecule:effector protein hopab2;
PDBTitle: crystal structure of effect protein avrptob complexed with2 kinase pto
9c3sviA_



22.0 19
PDB header:signaling protein
Chain: A: PDB Molecule:type iii effector hopab2;
PDBTitle: structure of the pto-binding domain of hoppmal generated by limited2 thermolysin digestion
10c3zbhC_



18.6 18
PDB header:unknown function
Chain: C: PDB Molecule:esxa;
PDBTitle: geobacillus thermodenitrificans esxa crystal form i
11c2kg7B_



16.2 7
PDB header:unknown function
Chain: B: PDB Molecule:esat-6-like protein esxh;
PDBTitle: structure and features of the complex formed by the tuberculosis2 virulence factors rv0287 and rv0288
12d1jnsa_



12.9 20
Fold:FKBP-like
Superfamily:FKBP-like
Family:FKBP immunophilin/proline isomerase
13d2pv2a1



11.9 25
Fold:FKBP-like
Superfamily:FKBP-like
Family:FKBP immunophilin/proline isomerase
14c1zk6A_



10.9 40
PDB header:isomerase
Chain: A: PDB Molecule:foldase protein prsa;
PDBTitle: nmr solution structure of b. subtilis prsa ppiase
15c3gpkA_



9.8 33
PDB header:isomerase
Chain: A: PDB Molecule:ppic-type peptidyl-prolyl cis-trans isomerase;
PDBTitle: crystal structure of ppic-type peptidyl-prolyl cis-trans isomerase2 domain at 1.55a resolution.
16c2l53B_



9.4 71
PDB header:ca-binding protein/proton transport
Chain: B: PDB Molecule:voltage-gated sodium channel type v alpha isoform b
PDBTitle: solution nmr structure of apo-calmodulin in complex with the iq motif2 of human cardiac sodium channel nav1.5
17c3gvmA_



8.9 16
PDB header:viral protein
Chain: A: PDB Molecule:putative uncharacterized protein sag1039;
PDBTitle: structure of the homodimeric wxg-100 family protein from streptococcus2 agalactiae
18d1m5ya3



8.4 13
Fold:FKBP-like
Superfamily:FKBP-like
Family:FKBP immunophilin/proline isomerase
19c1wrgA_



7.8 18
PDB header:membrane protein
Chain: A: PDB Molecule:light-harvesting protein b-880, beta chain;
PDBTitle: light-harvesting complex 1 beta subunit from wild-type2 rhodospirillum rubrum
20c2jzvA_



7.7 13
PDB header:isomerase
Chain: A: PDB Molecule:foldase protein prsa;
PDBTitle: solution structure of s. aureus prsa-ppiase
21c4e40A_



not modelled 7.6 19
PDB header:transport protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: the haptoglobin-hemoglobin receptor of trypanosoma congolense
22d1ecfa1



not modelled 7.3 27
Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosyltransferases (PRTases)
23d1gph11



not modelled 7.2 45
Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosyltransferases (PRTases)
24d1eq3a_



not modelled 6.9 33
Fold:FKBP-like
Superfamily:FKBP-like
Family:FKBP immunophilin/proline isomerase
25d1nera_



not modelled 6.7 12
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
26c6et5u_



not modelled 6.6 32
PDB header:photosynthesis
Chain: U: PDB Molecule:light-harvesting protein b-1015 gamma chain;
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
27c2rqsA_



not modelled 6.5 33
PDB header:isomerase
Chain: A: PDB Molecule:parvulin-like peptidyl-prolyl isomerase;
PDBTitle: 3d structure of pin from the psychrophilic archeon cenarcheaum2 symbiosum (cspin)
28d1wd5a_



not modelled 6.4 22
Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosyltransferases (PRTases)
29d1lghb_



not modelled 6.3 36
Fold:Light-harvesting complex subunits
Superfamily:Light-harvesting complex subunits
Family:Light-harvesting complex subunits
30c1y66D_



not modelled 5.9 39
PDB header:de novo protein
Chain: D: PDB Molecule:engrailed homeodomain;
PDBTitle: dioxane contributes to the altered conformation and2 oligomerization state of a designed engrailed homeodomain3 variant
31d1dc1a_



not modelled 5.6 58
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Restriction endonuclease BsobI
32c2vs0B_



not modelled 5.4 17
PDB header:cell invasion
Chain: B: PDB Molecule:virulence factor esxa;
PDBTitle: structural analysis of homodimeric staphylococcal aureus2 virulence factor esxa
33d1ikpa1



not modelled 5.3 54
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Exotoxin A, N-terminal domain
34d1jo5a_



not modelled 5.3 23
Fold:Light-harvesting complex subunits
Superfamily:Light-harvesting complex subunits
Family:Light-harvesting complex subunits
35c2kgjA_



not modelled 5.1 20
PDB header:isomerase
Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase d;
PDBTitle: solution structure of parvulin domain of ppid from e.coli

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite