Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3873_(PPE68)_4351253_4352359
DateSat Aug 10 22:05:05 BST 2019
Unique Job ID979e034e021b23a5
SequenceMLWHAMPPEL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:58.909 Y:70.340 Z:77.203
Model (left) based on template c5xfsB_
Top template information
PDB header:protein transport
Chain: B: PDB Molecule:ppe family protein ppe15;
PDBTitle: crystal structure of pe8-ppe15 in complex with espg5 from m.2 tuberculosis
Confidence and coverage
Confidence:100.0% Coverage: 47%
172 residues ( 47% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Warning: 55% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5xfsB_
100.0 41
PDB header:protein transport
Chain: B: PDB Molecule:ppe family protein ppe15;
PDBTitle: crystal structure of pe8-ppe15 in complex with espg5 from m.2 tuberculosis
2c2g38B_
100.0 29
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:ppe family protein;
PDBTitle: a pe/ppe protein complex from mycobacterium tuberculosis
3d2g38b1
100.0 29
Fold:Ferritin-like
Superfamily:PE/PPE dimer-like
Family:PPE
4c4xy3A_
100.0 18
PDB header:protein transport
Chain: A: PDB Molecule:esx-1 secretion-associated protein espb;
PDBTitle: structure of esx-1 secreted protein espb
5c4wj2A_
98.7 16
PDB header:unknown function
Chain: A: PDB Molecule:antigen mtb48;
PDBTitle: mycobacterial protein
6c2vs0B_
97.9 13
PDB header:cell invasion
Chain: B: PDB Molecule:virulence factor esxa;
PDBTitle: structural analysis of homodimeric staphylococcal aureus2 virulence factor esxa
7c3gvmA_
97.8 16
PDB header:viral protein
Chain: A: PDB Molecule:putative uncharacterized protein sag1039;
PDBTitle: structure of the homodimeric wxg-100 family protein from streptococcus2 agalactiae
8c4iogD_
97.8 15
PDB header:unknown function
Chain: D: PDB Molecule:secreted protein esxb;
PDBTitle: the crystal structure of a secreted protein esxb (wild-type, in p212 space group) from bacillus anthracis str. sterne
9c3zbhC_
97.7 13
PDB header:unknown function
Chain: C: PDB Molecule:esxa;
PDBTitle: geobacillus thermodenitrificans esxa crystal form i
10d1wa8a1
97.1 17
Fold:Ferritin-like
Superfamily:EsxAB dimer-like
Family:ESAT-6 like
11c4lwsB_
96.8 11
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
12c4lwsA_
96.7 14
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
13d1wa8b1
96.4 20
Fold:Ferritin-like
Superfamily:EsxAB dimer-like
Family:ESAT-6 like
14c4i0xA_
95.7 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:esat-6-like protein mab_3112;
PDBTitle: crystal structure of the mycobacterum abscessus esxef (mab_3112-2 mab_3113) complex
15c2kg7B_
93.8 13
PDB header:unknown function
Chain: B: PDB Molecule:esat-6-like protein esxh;
PDBTitle: structure and features of the complex formed by the tuberculosis2 virulence factors rv0287 and rv0288
16c4i0xJ_
89.2 16
PDB header:structural genomics, unknown function
Chain: J: PDB Molecule:esat-6-like protein mab_3113;
PDBTitle: crystal structure of the mycobacterum abscessus esxef (mab_3112-2 mab_3113) complex
17d1ui5a2
32.1 18
Fold:Tetracyclin repressor-like, C-terminal domain
Superfamily:Tetracyclin repressor-like, C-terminal domain
Family:Tetracyclin repressor-like, C-terminal domain
18c1bkvA_
14.1 50
PDB header:structural protein
Chain: A: PDB Molecule:t3-785;
PDBTitle: collagen
19c1bkvB_
13.3 50
PDB header:structural protein
Chain: B: PDB Molecule:t3-785;
PDBTitle: collagen
20c1bkvC_
13.3 50
PDB header:structural protein
Chain: C: PDB Molecule:t3-785;
PDBTitle: collagen
21c4dciA_
not modelled 12.4 27
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of unknown funciton protein from synechococcus sp.2 wh 8102
22c2kg7A_
not modelled 10.2 20
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein esxg (pe family protein);
PDBTitle: structure and features of the complex formed by the tuberculosis2 virulence factors rv0287 and rv0288
23c2iu1A_
not modelled 10.2 28
PDB header:transcription
Chain: A: PDB Molecule:eukaryotic translation initiation factor 5;
PDBTitle: crystal structure of eif5 c-terminal domain
24c2fulE_
not modelled 9.6 50
PDB header:translation
Chain: E: PDB Molecule:eukaryotic translation initiation factor 5;
PDBTitle: crystal structure of the c-terminal domain of s. cerevisiae eif5
25c3ay5A_
not modelled 9.3 27
PDB header:cell cycle
Chain: A: PDB Molecule:cyclin-d1-binding protein 1;
PDBTitle: crystal structure of hhm (human homologue of murine maternal id-like2 molecule)
26d1k91a_
not modelled 6.8 40
Fold:P-domain of calnexin/calreticulin
Superfamily:P-domain of calnexin/calreticulin
Family:P-domain of calnexin/calreticulin
27c3ukxC_
not modelled 6.8 57
PDB header:protein transport/inhibitor
Chain: C: PDB Molecule:bimax2 peptide;
PDBTitle: mouse importin alpha: bimax2 peptide complex
28c4yk3B_
not modelled 6.1 22
PDB header:protein binding
Chain: B: PDB Molecule:bepe protein;
PDBTitle: crystal structure of the bid domain of bepe from bartonella henselae
29c4yk2B_
not modelled 5.8 18
PDB header:protein binding
Chain: B: PDB Molecule:bartonella effector protein (bep) substrate of virb t4ss;
PDBTitle: crystal structure of the bid domain of bep9 from bartonella2 clarridgeiae
30c2kp7A_
not modelled 5.8 20
PDB header:hydrolase
Chain: A: PDB Molecule:crossover junction endonuclease mus81;
PDBTitle: solution nmr structure of the mus81 n-terminal hhh.2 northeast structural genomics consortium target mmt1a
31c4behB_
not modelled 5.6 27
PDB header:translation
Chain: B: PDB Molecule:60s acidic ribosomal protein p2;
PDBTitle: solution structure of human ribosomal protein p1.p2 heterodimer
32d1paqa_
not modelled 5.6 35
Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:MIF4G domain-like
33c1paqA_
not modelled 5.6 35
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor eif-2b epsilon
PDBTitle: crystal structure of the catalytic fragment of eukaryotic2 initiation factor 2b epsilon
34c3juiA_
not modelled 5.5 23
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor eif-2b subunit epsilon;
PDBTitle: crystal structure of the c-terminal domain of human translation2 initiation factor eif2b epsilon subunit
35d1x4ka2
not modelled 5.4 33
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
36d1dlpa1
not modelled 5.4 18
Fold:beta-Prism II
Superfamily:alpha-D-mannose-specific plant lectins
Family:alpha-D-mannose-specific plant lectins
37c4grdA_
not modelled 5.4 26
PDB header:lyase,isomerase
Chain: A: PDB Molecule:phosphoribosylaminoimidazole carboxylase catalytic subunit;
PDBTitle: crystal structure of phosphoribosylaminoimidazole carboxylase2 catalytic subunit from burkholderia cenocepacia j2315
38c3q4hB_
not modelled 5.3 23
PDB header:metal transport
Chain: B: PDB Molecule:low molecular weight protein antigen 7;
PDBTitle: crystal structure of the mycobacterium smegmatis esxgh complex2 (msmeg_0620-msmeg_0621)
39c4gyxC_
not modelled 5.2 36
PDB header:structural protein, blood clotting
Chain: C: PDB Molecule:type iii collagen fragment in a host peptide stabilized by
PDBTitle: the von willebrand factor a3 domain binding region of type iii2 collagen stabilized by the cysteine knot
40c2y5tG_
not modelled 5.2 67
PDB header:immune system
Chain: G: PDB Molecule:c1;
PDBTitle: crystal structure of the pathogenic autoantibody ciic1 in complex with2 the triple-helical c1 peptide
41c4gyxB_
not modelled 5.0 36
PDB header:structural protein, blood clotting
Chain: B: PDB Molecule:type iii collagen fragment in a host peptide stabilized by
PDBTitle: the von willebrand factor a3 domain binding region of type iii2 collagen stabilized by the cysteine knot
42c4gyxA_
not modelled 5.0 36
PDB header:structural protein, blood clotting
Chain: A: PDB Molecule:type iii collagen fragment in a host peptide stabilized by
PDBTitle: the von willebrand factor a3 domain binding region of type iii2 collagen stabilized by the cysteine knot
43c4fprC_
not modelled 5.0 36
PDB header:protein binding
Chain: C: PDB Molecule:avirulence effector avrlm4-7;
PDBTitle: structure of a fungal protein

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below