Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3880c_(-)_4360377_4360724
DateSat Aug 10 22:05:06 BST 2019
Unique Job ID31a4c7e577a78216
SequenceVSMDELDPHV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:29.858 Y:63.887 Z:25.419
Model (left) based on template d1j8ba_
Top template information
Fold:YbaB-like
Superfamily:YbaB-like
Family:YbaB-like
Confidence and coverage
Confidence: 98.7% Coverage: 75%
86 residues ( 75% of your sequence) have been modelled with 98.7% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1j8ba_



98.7 17
Fold:YbaB-like
Superfamily:YbaB-like
Family:YbaB-like
2d1puga_



98.6 20
Fold:YbaB-like
Superfamily:YbaB-like
Family:YbaB-like
3c1ybxA_



98.1 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein;
PDBTitle: conserved hypothetical protein cth-383 from clostridium thermocellum
4c3f42A_



97.5 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein hp0035;
PDBTitle: crystal structure of uncharacterized protein hp0035 from helicobacter2 pylori
5d1pugb_



96.6 22
Fold:YbaB-like
Superfamily:YbaB-like
Family:YbaB-like
6c5yrxA_



96.1 16
PDB header:dna binding protein
Chain: A: PDB Molecule:nucleoid-associated protein rv3716c;
PDBTitle: crystal structure of a hypothetical protein rv3716c from mycobacterium2 tuberculosis
7c3hnwB_



60.4 22
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a basic coiled-coil protein of unknown function2 from eubacterium eligens atcc 27750
8d1a87a_



49.4 20
Fold:Toxins' membrane translocation domains
Superfamily:Colicin
Family:Colicin
9c1a87A_



49.4 20
PDB header:bacteriocin
Chain: A: PDB Molecule:colicin n;
PDBTitle: colicin n
10d1t3ua_



33.0 19
Fold:Cell division protein ZapA-like
Superfamily:Cell division protein ZapA-like
Family:Cell division protein ZapA-like
11d2o6pa1



30.0 33
Fold:Immunoglobulin-like beta-sandwich
Superfamily:NEAT domain-like
Family:NEAT domain
12c2o6pA_



29.4 33
PDB header:transport protein
Chain: A: PDB Molecule:iron-regulated surface determinant protein c;
PDBTitle: crystal structure of the heme-isdc complex
13d2d9ra1



25.4 21
Fold:Double-split beta-barrel
Superfamily:AF2212/PG0164-like
Family:PG0164-like
14c4akrC_



23.5 29
PDB header:actin-binding protein
Chain: C: PDB Molecule:f-actin-capping protein subunit alpha;
PDBTitle: crystal structure of the cytoplasmic actin capping protein2 cap32_34 from dictyostelium discoideum
15c2k78A_



20.5 36
PDB header:heme-binding protein
Chain: A: PDB Molecule:iron-regulated surface determinant protein c;
PDBTitle: solution structure of the isdc neat domain bound to zinc2 protoporphyrin
16c5w6pB_



17.9 55
PDB header:viral protein, hydrolase
Chain: B: PDB Molecule:tailspike protein 2;
PDBTitle: crystal structure of bacteriophage cba120 tailspike protein 22 enzymatically active domain (tsp2dn, orf211)
17d2itea1



17.8 4
Fold:Immunoglobulin-like beta-sandwich
Superfamily:NEAT domain-like
Family:NEAT domain
18c3teqB_



17.2 24
PDB header:signaling protein
Chain: B: PDB Molecule:stromal interaction molecule 1;
PDBTitle: crystal structure of soar domain
19d1izna_



16.4 17
Fold:Subunits of heterodimeric actin filament capping protein Capz
Superfamily:Subunits of heterodimeric actin filament capping protein Capz
Family:Capz alpha-1 subunit
20c2mmvA_



15.7 21
PDB header:cell cycle
Chain: A: PDB Molecule:cell division protein zapa;
PDBTitle: zapa mutant dimer from geobacillus stearothermophilus
21c4mypA_



not modelled 15.3 23
PDB header:heme-binding protein
Chain: A: PDB Molecule:iron-regulated surface determinant protein a;
PDBTitle: structure of the central neat domain, n2, of the listerial hbp22 protein complexed with heme
22c2e7dA_



not modelled 15.1 14
PDB header:metal binding protein
Chain: A: PDB Molecule:hypothetical protein isdh;
PDBTitle: crystal structure of a neat domain from staphylococcus aureus
23c3sz6B_



not modelled 14.2 9
PDB header:heme-binding protein
Chain: B: PDB Molecule:conserved domain protein;
PDBTitle: isdx1, an anthrax hemophore
24d2j9ua1



not modelled 13.7 30
Fold:Four-helical up-and-down bundle
Superfamily:VPS28 C-terminal domain-like
Family:VPS28 C-terminal domain-like
25d1hn0a3



not modelled 13.2 70
Fold:Hyaluronate lyase-like, C-terminal domain
Superfamily:Hyaluronate lyase-like, C-terminal domain
Family:Hyaluronate lyase-like, C-terminal domain
26c5wvmA_



not modelled 13.1 32
PDB header:sugar binding protein
Chain: A: PDB Molecule:maltose-binding periplasmic protein,two-component system
PDBTitle: crystal structure of baes cocrystallized with 2 mm indole
27d1eh9a2



not modelled 12.2 50
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
28d2co3a1



not modelled 11.5 29
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Bacterial adhesins
Family:Pilus subunits
29c3terA_



not modelled 11.5 10
PDB header:metal binding protein
Chain: A: PDB Molecule:mammalian stromal interaction molecule-1;
PDBTitle: crystal structure of soar domain with inhibition helix from c. elegans
30d2cnza1



not modelled 11.4 29
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Bacterial adhesins
Family:Pilus subunits
31c2kq1A_



not modelled 10.8 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:bh0266 protein;
PDBTitle: solution structure of protein bh0266 from bacillus2 halodurans. northeast structural genomics consortium target3 bhr97a
32c3m86B_



not modelled 10.7 25
PDB header:protein binding
Chain: B: PDB Molecule:amoebiasin-2;
PDBTitle: crystal structure of the cysteine protease inhibitor, ehicp2, from2 entamoeba histolytica
33c5o6vF_



not modelled 10.2 38
PDB header:virus
Chain: F: PDB Molecule:small envelope protein m;
PDBTitle: the cryo-em structure of tick-borne encephalitis virus complexed with2 fab fragment of neutralizing antibody 19/1786
34d3cdda2



not modelled 9.8 22
Fold:Phage tail proteins
Superfamily:Phage tail proteins
Family:Baseplate protein-like
35c4hcgA_



not modelled 9.7 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:cupredoxin 1;
PDBTitle: uncharacterized cupredoxin-like domain protein cupredoxin_1 with zinc2 bound from bacillus anthracis
36c6f3tK_



not modelled 9.7 26
PDB header:transcription
Chain: K: PDB Molecule:transcription initiation factor tfiid subunit 6;
PDBTitle: crystal structure of the human taf5-taf6-taf9 complex
37c2npbA_



not modelled 9.7 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:selenoprotein w;
PDBTitle: nmr solution structure of mouse selw
38c4b28A_



not modelled 9.5 24
PDB header:lyase
Chain: A: PDB Molecule:metallopeptidase, family m24, putative;
PDBTitle: crystal structure of dmsp lyase rddddp from roseobacter denitrificans
39c2j9wB_



not modelled 9.4 25
PDB header:protein transport
Chain: B: PDB Molecule:vps28-prov protein;
PDBTitle: structural insight into the escrt-i-ii link and its role in mvb2 trafficking
40c6n1fD_



not modelled 9.3 21
PDB header:oxidoreductase
Chain: D: PDB Molecule:oxidoreductase, 2og-fe(ii) oxygenase family;
PDBTitle: crystal structure of oxidoreductase, 2og-fe(ii) oxygenase family, from2 burkholderia pseudomallei
41c5o6vD_



not modelled 9.2 38
PDB header:virus
Chain: D: PDB Molecule:small envelope protein m;
PDBTitle: the cryo-em structure of tick-borne encephalitis virus complexed with2 fab fragment of neutralizing antibody 19/1786
42d1sr3a_



not modelled 9.0 29
Fold:OB-fold
Superfamily:Heme chaperone CcmE
Family:Heme chaperone CcmE
43c5o6vE_



not modelled 8.8 38
PDB header:virus
Chain: E: PDB Molecule:small envelope protein m;
PDBTitle: the cryo-em structure of tick-borne encephalitis virus complexed with2 fab fragment of neutralizing antibody 19/1786
44c4ympC_



not modelled 8.6 6
PDB header:heme-binding protein
Chain: C: PDB Molecule:internalin;
PDBTitle: crystal structure of the bacillus anthracis hal neat domain in complex2 with heme
45c4yo3G_



not modelled 8.5 25
PDB header:transport protein
Chain: G: PDB Molecule:tssa;
PDBTitle: enteroaggregative escherichia coli tssa n-terminal fragment
46c3ge2A_



not modelled 8.5 16
PDB header:lipoprotein
Chain: A: PDB Molecule:lipoprotein, putative;
PDBTitle: crystal structure of putative lipoprotein sp_0198 from streptococcus2 pneumoniae
47c5o6aF_



not modelled 8.3 38
PDB header:virus
Chain: F: PDB Molecule:small envelope protein m;
PDBTitle: the cryo-em structure of tick-borne encephalitis virus mature particle
48c5o6aE_



not modelled 8.3 38
PDB header:virus
Chain: E: PDB Molecule:small envelope protein m;
PDBTitle: the cryo-em structure of tick-borne encephalitis virus mature particle
49c5o6aD_



not modelled 8.3 38
PDB header:virus
Chain: D: PDB Molecule:small envelope protein m;
PDBTitle: the cryo-em structure of tick-borne encephalitis virus mature particle
50c3cddD_



not modelled 8.1 22
PDB header:structural protein
Chain: D: PDB Molecule:prophage muso2, 43 kda tail protein;
PDBTitle: crystal structure of prophage muso2, 43 kda tail protein from2 shewanella oneidensis
51c3rurB_



not modelled 7.8 4
PDB header:metal transport
Chain: B: PDB Molecule:iron-regulated surface determinant protein b;
PDBTitle: staphylococcus aureus heme-bound selenomethionine-labeled isdb-n2
52d1iq8a4



not modelled 7.6 45
Fold:Cystatin-like
Superfamily:Pre-PUA domain
Family:Archaeosine tRNA-guanine transglycosylase, C2 domain
53c3m6cA_



not modelled 7.6 26
PDB header:chaperone
Chain: A: PDB Molecule:60 kda chaperonin 1;
PDBTitle: crystal structure of mycobacterium tuberculosis groel1 apical domain
54d2oq0a1



not modelled 7.6 23
Fold:OB-fold
Superfamily:HIN-2000 domain-like
Family:HIN-200/IF120x domain
55c4b6ad_



not modelled 7.5 38
PDB header:ribosome
Chain: D: PDB Molecule:60s ribosomal protein l5;
PDBTitle: cryo-em structure of the 60s ribosomal subunit in complex2 with arx1 and rei1
56c5vmmE_



not modelled 7.4 4
PDB header:transport protein
Chain: E: PDB Molecule:iron-regulated cell wall-anchored protein;
PDBTitle: staphylococcus aureus isdb bound to human hemoglobin
57d2a29a1



not modelled 7.1 12
Fold:Metal cation-transporting ATPase, ATP-binding domain N
Superfamily:Metal cation-transporting ATPase, ATP-binding domain N
Family:Metal cation-transporting ATPase, ATP-binding domain N
58d3b5ha2



not modelled 7.0 50
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
59c3lyhB_



not modelled 6.9 25
PDB header:lyase
Chain: B: PDB Molecule:cobalamin (vitamin b12) biosynthesis cbix protein;
PDBTitle: crystal structure of putative cobalamin (vitamin b12) biosynthesis2 cbix protein (yp_958415.1) from marinobacter aquaeolei vt8 at 1.60 a3 resolution
60c2vzaD_



not modelled 6.7 26
PDB header:cell adhesion
Chain: D: PDB Molecule:cell filamentation protein;
PDBTitle: type iv secretion system effector protein bepa
61c4e1rA_



not modelled 6.7 29
PDB header:dna binding protein
Chain: A: PDB Molecule:protein lsr2;
PDBTitle: crystal structure of the dimerization domain of lsr2 from2 mycobacterium tuberculosis in the p 31 2 1 space group
62c4e1pA_



not modelled 6.7 29
PDB header:dna binding protein
Chain: A: PDB Molecule:protein lsr2;
PDBTitle: crystal structure of the dimerization domain of lsr2 from2 mycobacterium tuberculosis in the p 1 21 1 space group
63c2qjlA_



not modelled 6.5 32
PDB header:signaling protein
Chain: A: PDB Molecule:ubiquitin-related modifier 1;
PDBTitle: crystal structure of urm1
64c3e0eA_



not modelled 6.3 15
PDB header:replication
Chain: A: PDB Molecule:replication protein a;
PDBTitle: crystal structure of a domain of replication protein a from2 methanococcus maripaludis. northeast structural genomics3 targe mrr110b
65c4fxtB_



not modelled 6.3 13
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf3823 family protein (bacova_02663) from2 bacteroides ovatus atcc 8483 at 2.77 a resolution
66d1qxya_



not modelled 6.3 35
Fold:Creatinase/aminopeptidase
Superfamily:Creatinase/aminopeptidase
Family:Creatinase/aminopeptidase
67c4qdyA_



not modelled 6.1 25
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein;
PDBTitle: crystal structure of a ybbr-like protein (sp_1560) from streptococcus2 pneumoniae tigr4 at 2.74 a resolution
68c2zbtB_



not modelled 6.1 27
PDB header:lyase
Chain: B: PDB Molecule:pyridoxal biosynthesis lyase pdxs;
PDBTitle: crystal structure of pyridoxine biosynthesis protein from thermus2 thermophilus hb8
69c3ig4E_



not modelled 6.1 30
PDB header:hydrolase
Chain: E: PDB Molecule:xaa-pro aminopeptidase;
PDBTitle: structure of a putative aminopeptidase p from bacillus anthracis
70c4fo7B_



not modelled 6.1 47
PDB header:hydrolase
Chain: B: PDB Molecule:methionine aminopeptidase;
PDBTitle: pseudomonas aeruginosa metap, in mn form
71c6g7cF_



not modelled 6.0 43
PDB header:transport protein
Chain: F: PDB Molecule:impa-related domain protein;
PDBTitle: nt2-ctd domains of the tssa component from the type vi secretion2 system of aeromonas hydrophila.
72c4txvB_



not modelled 5.9 21
PDB header:protein binding
Chain: B: PDB Molecule:cytochrome c oxidase subunit 2;
PDBTitle: crystal structure of the mixed disulfide intermediate between2 thioredoxin-like tlpas(c110s) and subunit ii of cytochrome c oxidase3 coxbpd (c233s)
73c6mzmI_



not modelled 5.9 25
PDB header:transcription/dna
Chain: I: PDB Molecule:transcription initiation factor tfiid subunit 6;
PDBTitle: human tfiid bound to promoter dna and tfiia
74c4qslC_



not modelled 5.7 35
PDB header:ligase
Chain: C: PDB Molecule:pyruvate carboxylase;
PDBTitle: crystal structure of listeria monocytogenes pyruvate carboxylase
75c3lnbA_



not modelled 5.7 9
PDB header:transferase
Chain: A: PDB Molecule:n-acetyltransferase family protein;
PDBTitle: crystal structure analysis of arylamine n-acetyltransferase c from2 bacillus anthracis
76d1tafb_



not modelled 5.6 26
Fold:Histone-fold
Superfamily:Histone-fold
Family:TBP-associated factors, TAFs
77d1wrua2



not modelled 5.6 18
Fold:Phage tail proteins
Superfamily:Phage tail proteins
Family:Baseplate protein-like
78c4qr8B_



not modelled 5.5 20
PDB header:hydrolase
Chain: B: PDB Molecule:xaa-pro dipeptidase;
PDBTitle: crystal structure of e coli pepq
79c4h8pA_



not modelled 5.3 23
PDB header:heme-binding protein
Chain: A: PDB Molecule:iron transport-associated domain protein;
PDBTitle: neat5 domain of isdx2, a b. anthracis hemophore in complex with heme
80d1o0xa_



not modelled 5.3 40
Fold:Creatinase/aminopeptidase
Superfamily:Creatinase/aminopeptidase
Family:Creatinase/aminopeptidase
81d2gg2a1



not modelled 5.3 33
Fold:Creatinase/aminopeptidase
Superfamily:Creatinase/aminopeptidase
Family:Creatinase/aminopeptidase

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