Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3882c_(-)_4362210_4363598
DateSat Aug 10 22:05:06 BST 2019
Unique Job IDb997c9dc9702a6db
SequenceMRNPLGLRFS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:42.055 Y:56.076 Z:42.750
Model (left) based on template c4k2bA_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:ntd biosynthesis operon protein ntda;
PDBTitle: crystal structure of ntda from bacillus subtilis in complex with the2 internal aldimine
Confidence and coverage
Confidence: 53.3% Coverage: 16%
73 residues ( 16% of your sequence) have been modelled with 53.3% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4k2bA_



53.3 25
PDB header:transferase
Chain: A: PDB Molecule:ntd biosynthesis operon protein ntda;
PDBTitle: crystal structure of ntda from bacillus subtilis in complex with the2 internal aldimine
2c1z65A_



41.1 29
PDB header:unknown function
Chain: A: PDB Molecule:prion-like protein doppel;
PDBTitle: mouse doppel 1-30 peptide
3c5zkxA_



32.9 27
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein;
PDBTitle: the postfusion structure of human-infecting bourbon virus envelope2 glycoprotein
4c3duzA_



31.6 32
PDB header:viral protein
Chain: A: PDB Molecule:major envelope glycoprotein;
PDBTitle: crystal structure of the postfusion form of baculovirus2 fusion protein gp64
5c4px7A_



31.2 19
PDB header:hydrolase
Chain: A: PDB Molecule:phosphatidylglycerophosphatase;
PDBTitle: crystal structure of lipid phosphatase e. coli pgpb
6c5xebC_



30.0 32
PDB header:viral protein
Chain: C: PDB Molecule:envelope glycoprotein;
PDBTitle: structure of the envelope glycoprotein of dhori virus
7c5zl6A_



29.8 15
PDB header:isomerase
Chain: A: PDB Molecule:histidine racemase;
PDBTitle: histidine racemase from leuconostoc mesenteroides subsp. sake nbrc2 102480
8c5xeaB_



28.2 32
PDB header:viral protein
Chain: B: PDB Molecule:envelope glycoprotein;
PDBTitle: structure of thogoto virus envelope glycoprotein
9c4eclA_



21.5 10
PDB header:isomerase
Chain: A: PDB Molecule:serine racemase;
PDBTitle: crystal structure of the cytoplasmic domain of vancomycin resistance2 serine racemase vantg
10c5xcoB_



18.8 55
PDB header:hydrolase/hydrolase inhibitor
Chain: B: PDB Molecule:ace-arg-arg-arg-arg-cys-pro-leu-tyr-ile-ser-tyr-asp-pro-
PDBTitle: crystal structure of human k-ras g12d mutant in complex with gdp and2 cyclic inhibitory peptide
11d1dmla1



16.7 29
Fold:DNA clamp
Superfamily:DNA clamp
Family:DNA polymerase processivity factor
12c2k42B_



15.5 38
PDB header:signaling protein
Chain: B: PDB Molecule:espfu;
PDBTitle: solution structure of the gtpase binding domain of wasp in2 complex with espfu, an ehec effector
13c3mlqH_



15.1 17
PDB header:transferase/transcription
Chain: H: PDB Molecule:transcription-repair coupling factor;
PDBTitle: crystal structure of the thermus thermophilus transcription-repair2 coupling factor rna polymerase interacting domain with the thermus3 aquaticus rna polymerase beta1 domain
14d1x4ka1



12.4 33
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
15c3co8B_



11.7 12
PDB header:isomerase
Chain: B: PDB Molecule:alanine racemase;
PDBTitle: crystal structure of alanine racemase from oenococcus oeni
16c5gy6A_



11.7 57
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease t1;
PDBTitle: ribonuclease from hericium erinaceus (rnase he1)
17d1w0da_



11.7 36
Fold:Isocitrate/Isopropylmalate dehydrogenase-like
Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like
Family:Dimeric isocitrate & isopropylmalate dehydrogenases
18c2daeA_



11.4 11
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:kiaa0733 protein;
PDBTitle: solution structure of the n-terminal cue domain in the2 human mitogen-activated protein kinase kinase kinase 73 interacting protein 2 (map3k7ip2)
19c3mb2J_



10.8 39
PDB header:isomerase
Chain: J: PDB Molecule:4-oxalocrotonate tautomerase family enzyme - beta subunit;
PDBTitle: kinetic and structural characterization of a heterohexamer 4-2 oxalocrotonate tautomerase from chloroflexus aurantiacus j-10-fl:3 implications for functional and structural diversity in the4 tautomerase superfamily
20c4y2wA_



10.8 17
PDB header:isomerase
Chain: A: PDB Molecule:alanine racemase 1;
PDBTitle: crystal structure of a thermostable alanine racemase from2 thermoanaerobacter tengcongensis mb4
21d2rdea1



not modelled 10.7 19
Fold:Split barrel-like
Superfamily:PilZ domain-like
Family:PilZ domain
22c1dmlG_



not modelled 10.0 29
PDB header:dna binding protein/transferase
Chain: G: PDB Molecule:dna polymerase processivity factor;
PDBTitle: crystal structure of herpes simplex ul42 bound to the c-terminus of2 hsv pol
23c2lnhC_



not modelled 9.7 38
PDB header:signaling protein/protein binding
Chain: C: PDB Molecule:secreted effector protein espf(u);
PDBTitle: enterohaemorrhagic e. coli (ehec) exploits a tryptophan switch to2 hijack host f-actin assembly
24d1fnja_



not modelled 8.8 16
Fold:Bacillus chorismate mutase-like
Superfamily:YjgF-like
Family:Chorismate mutase
25c3e2vA_



not modelled 7.9 30
PDB header:hydrolase
Chain: A: PDB Molecule:3'-5'-exonuclease;
PDBTitle: crystal structure of an uncharacterized amidohydrolase from2 saccharomyces cerevisiae
26c3mlqE_



not modelled 7.8 18
PDB header:transferase/transcription
Chain: E: PDB Molecule:transcription-repair coupling factor;
PDBTitle: crystal structure of the thermus thermophilus transcription-repair2 coupling factor rna polymerase interacting domain with the thermus3 aquaticus rna polymerase beta1 domain
27c5hk1A_



not modelled 7.5 39
PDB header:membrane protein
Chain: A: PDB Molecule:sigma non-opioid intracellular receptor 1;
PDBTitle: human sigma-1 receptor bound to pd144418
28c3h87D_



not modelled 7.5 25
PDB header:toxin/antitoxin
Chain: D: PDB Molecule:putative uncharacterized protein;
PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis
29d1dbfa_



not modelled 7.4 16
Fold:Bacillus chorismate mutase-like
Superfamily:YjgF-like
Family:Chorismate mutase
30d2icsa1



not modelled 7.3 42
Fold:Composite domain of metallo-dependent hydrolases
Superfamily:Composite domain of metallo-dependent hydrolases
Family:Adenine deaminase
31c2ej9A_



not modelled 7.2 16
PDB header:ligase
Chain: A: PDB Molecule:putative biotin ligase;
PDBTitle: crystal structure of biotin protein ligase from2 methanococcus jannaschii
32c3e6eC_



not modelled 7.1 14
PDB header:isomerase
Chain: C: PDB Molecule:alanine racemase;
PDBTitle: crystal structure of alanine racemase from e.faecalis2 complex with cycloserine
33d1rdsa_



not modelled 7.1 40
Fold:Microbial ribonucleases
Superfamily:Microbial ribonucleases
Family:Fungal ribonucleases
34d1mlaa2



not modelled 6.9 26
Fold:Ferredoxin-like
Superfamily:Probable ACP-binding domain of malonyl-CoA ACP transacylase
Family:Probable ACP-binding domain of malonyl-CoA ACP transacylase
35c5i8iD_



not modelled 6.9 19
PDB header:hydrolase
Chain: D: PDB Molecule:urea amidolyase;
PDBTitle: crystal structure of the k. lactis urea amidolyase
36c2n5uA_



not modelled 6.8 44
PDB header:photosynthesis
Chain: A: PDB Molecule:tsr0524 protein;
PDBTitle: solution structure of the cyanobacterial cytochrome b6f complex2 subunit petp
37c3kw3B_



not modelled 6.8 9
PDB header:isomerase
Chain: B: PDB Molecule:alanine racemase;
PDBTitle: crystal structure of alanine racemase from bartonella henselae with2 covalently bound pyridoxal phosphate
38c2vy8A_



not modelled 6.8 60
PDB header:transcription
Chain: A: PDB Molecule:polymerase basic protein 2;
PDBTitle: the 627-domain from influenza a virus polymerase pb22 subunit with glu-627
39c4bf5A_



not modelled 6.7 12
PDB header:isomerase
Chain: A: PDB Molecule:alanine racemase;
PDBTitle: structure of broad spectrum racemase from aeromonas hydrophila
40c5yeeA_



not modelled 6.7 50
PDB header:structural protein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of lokiprofilin1/rabbit actin complex
41d1xhoa_



not modelled 6.5 17
Fold:Bacillus chorismate mutase-like
Superfamily:YjgF-like
Family:Chorismate mutase
42c1xhoB_



not modelled 6.5 17
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:chorismate mutase;
PDBTitle: chorismate mutase from clostridium thermocellum cth-682
43c2na1A_



not modelled 6.5 16
PDB header:transcription
Chain: A: PDB Molecule:polycomb complex protein bmi-1, polyhomeotic-like 2;
PDBTitle: uld complex
44c4l0kC_



not modelled 6.3 60
PDB header:hydrolase
Chain: C: PDB Molecule:draiii;
PDBTitle: crystal structure of a type ii restriction endonuclease
45c4q6uA_



not modelled 6.2 28
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative uncharacterized protein from2 mycobacterium tuberculosis
46c2axoA_



not modelled 5.8 13
PDB header:unknown function
Chain: A: PDB Molecule:hypothetical protein atu2684;
PDBTitle: x-ray crystal structure of protein agr_c_4864 from agrobacterium2 tumefaciens. northeast structural genomics consortium target atr35.
47c5irpA_



not modelled 5.7 21
PDB header:isomerase
Chain: A: PDB Molecule:alanine racemase 2;
PDBTitle: crystal structure of the alanine racemase bsu17640 from bacillus2 subtilis
48d1pbya2



not modelled 5.7 38
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
49c4ag5A_



not modelled 5.6 13
PDB header:hydrolase
Chain: A: PDB Molecule:type iv secretory pathway virb4 components-like protein;
PDBTitle: structure of virb4 of thermoanaerobacter pseudethanolicus
50c2i6hA_



not modelled 5.4 41
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein atu0120;
PDBTitle: structure of protein of unknown function atu0120 from agrobacterium2 tumefaciens
51d2i6ha1



not modelled 5.4 41
Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:Atu0120-like
52c2vofB_



not modelled 5.3 64
PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-binding component 3;
PDBTitle: structure of mouse a1 bound to the puma bh3-domain
53d1i0va_



not modelled 5.3 40
Fold:Microbial ribonucleases
Superfamily:Microbial ribonucleases
Family:Fungal ribonucleases
54c1y96C_



not modelled 5.3 32
PDB header:rna binding protein
Chain: C: PDB Molecule:gem-associated protein 6;
PDBTitle: crystal structure of the gemin6/gemin7 heterodimer from the2 human smn complex
55c6apjA_



not modelled 5.2 20
PDB header:transferase
Chain: A: PDB Molecule:alpha-n-acetylgalactosaminide alpha-2,6-sialyltransferase
PDBTitle: crystal structure of human st6galnac2
56c2wwaJ_



not modelled 5.2 15
PDB header:ribosome
Chain: J: PDB Molecule:60s ribosomal protein l19;
PDBTitle: cryo-em structure of idle yeast ssh1 complex bound to the yeast 80s2 ribosome
57d1jmxa2



not modelled 5.1 38
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
58c1niuA_



not modelled 5.1 17
PDB header:isomerase
Chain: A: PDB Molecule:alanine racemase;
PDBTitle: alanine racemase with bound inhibitor derived from l-2 cycloserine

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Transmembrane helix prediction 

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