Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3885c_(-)_4367086_4368699
DateSat Aug 10 22:05:07 BST 2019
Unique Job ID2d2461fe5298c997
SequenceLTSKLTGFSP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:24.373 Y:36.639 Z:32.283
Model (left) based on template c3fdfA_
Top template information
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:fr253;
PDBTitle: crystal structure of the serine phosphatase of rna2 polymerase ii ctd (ssu72 superfamily) from drosophila3 melanogaster. orthorhombic crystal form. northeast4 structural genomics consortium target fr253.
Confidence and coverage
Confidence: 65.3% Coverage: 7%
36 residues ( 7% of your sequence) have been modelled with 65.3% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3fdfA_
65.3 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:fr253;
PDBTitle: crystal structure of the serine phosphatase of rna2 polymerase ii ctd (ssu72 superfamily) from drosophila3 melanogaster. orthorhombic crystal form. northeast4 structural genomics consortium target fr253.
2c3o2qB_
62.0 22
PDB header:hydrolase
Chain: B: PDB Molecule:rna polymerase ii subunit a c-terminal domain phosphatase
PDBTitle: crystal structure of the human symplekin-ssu72-ctd phosphopeptide2 complex
3c3o2sB_
49.6 22
PDB header:hydrolase
Chain: B: PDB Molecule:rna polymerase ii subunit a c-terminal domain phosphatase
PDBTitle: crystal structure of the human symplekin-ssu72 complex
4c2jsnA_
16.9 28
PDB header:protein transport
Chain: A: PDB Molecule:trafficking protein particle complex subunit 4;
PDBTitle: solution structure of the atypical pdz-like domain of2 synbindin
5d1kjqa2
14.1 18
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
6c2pe4A_
13.4 20
PDB header:hydrolase
Chain: A: PDB Molecule:hyaluronidase-1;
PDBTitle: structure of human hyaluronidase 1, a hyaluronan hydrolyzing enzyme2 involved in tumor growth and angiogenesis
7d1em8a_
13.2 10
Fold:DNA polymerase III chi subunit
Superfamily:DNA polymerase III chi subunit
Family:DNA polymerase III chi subunit
8d2psba1
13.0 29
Fold:YerB-like
Superfamily:YerB-like
Family:YerB-like
9c2psbA_
13.0 29
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:yerb protein;
PDBTitle: crystal structure of yerb protein from bacillus subtilis. northeast2 structural genomics target sr586
10c6hwhX_
13.0 18
PDB header:electron transport
Chain: X: PDB Molecule:cytochrome c oxidase polypeptide 4;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
11c3i0oA_
12.3 19
PDB header:transferase
Chain: A: PDB Molecule:spectinomycin phosphotransferase;
PDBTitle: crystal structure of spectinomycin phosphotransferase,2 aph(9)-ia, in complex with adp and spectinomcyin
12c2iusB_
12.0 15
PDB header:membrane protein
Chain: B: PDB Molecule:dna translocase ftsk;
PDBTitle: e. coli ftsk motor domain
13c3vxgA_
12.0 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:conjugated polyketone reductase c2;
PDBTitle: crystal structure of conjugated polyketone reductase c2 from candida2 parapsilosis
14c4pcvB_
11.4 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:bdca (yjgi);
PDBTitle: the structure of bdca (yjgi) from e. coli
15c2m0nA_
11.0 55
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: solution structure of a duf3349 annotated protein from mycobacterium2 abscessus, mab_3403c. seattle structural genomics center for3 infectious disease target myaba.17112.a.a2
16c4nimA_
10.8 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:versicolorin reductase;
PDBTitle: crystal structure of a short chain dehydrogenase from brucella2 melitensis
17d1pkha_
10.5 18
Fold:beta-clip
Superfamily:dUTPase-like
Family:dUTPase-like
18c2iuuE_
9.6 19
PDB header:membrane protein
Chain: E: PDB Molecule:dna translocase ftsk;
PDBTitle: p. aeruginosa ftsk motor domain, hexamer
19c2iutA_
9.6 19
PDB header:membrane protein
Chain: A: PDB Molecule:dna translocase ftsk;
PDBTitle: p. aeruginosa ftsk motor domain, dimeric
20c6jczL_
9.2 13
PDB header:isomerase
Chain: L: PDB Molecule:putative ketol-acid reductoisomerase 2;
PDBTitle: cryo-em structure of sulfolobus solfataricus ketol-acid2 reductoisomerase (sso-kari) in complex with mg2+, nadph, and cpd at3 ph7.5
21c4kmhB_
not modelled 9.1 29
PDB header:protein binding
Chain: B: PDB Molecule:suppressor of fused homolog;
PDBTitle: crystal structure of suppressor of fused d20
22c5tcsB_
not modelled 9.0 22
PDB header:replication
Chain: B: PDB Molecule:kinetochore protein nuf2;
PDBTitle: crystal structure of a dwarf ndc80 tetramer
23d1bdba_
not modelled 8.8 9
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
24c2wokA_
not modelled 8.6 10
PDB header:peptide binding protein/peptide
Chain: A: PDB Molecule:clavulanic acid biosynthesis oligopeptide binding protein
PDBTitle: clavulanic acid biosynthesis oligopeptide binding protein 2 complexed2 with bradykinin
25c4qb0A_
not modelled 8.1 50
PDB header:viral protein
Chain: A: PDB Molecule:nucleoprotein;
PDBTitle: the crystal structure of the c-terminal domain of ebola (zaire)2 nucleoprotein
26c5lnkq_
not modelled 7.5 31
PDB header:oxidoreductase
Chain: Q: PDB Molecule:
PDBTitle: entire ovine respiratory complex i
27c1oeiA_
not modelled 7.3 50
PDB header:prion protein
Chain: A: PDB Molecule:major prion protein;
PDBTitle: human prion protein 61-84
28c2lkyA_
not modelled 7.2 45
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of msmeg_1053, the second duf3349 annotated protein2 in the genome of mycobacterium smegmatis, seattle structural genomics3 center for infectious disease target mysma.17112.b
29c2jz7A_
not modelled 7.2 23
PDB header:selenium-binding protein
Chain: A: PDB Molecule:selenium binding protein;
PDBTitle: solution nmr structure of selenium-binding protein from2 methanococcus vannielii
30c2ki8A_
not modelled 7.0 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:tungsten formylmethanofuran dehydrogenase,
PDBTitle: solution nmr structure of tungsten formylmethanofuran2 dehydrogenase subunit d from archaeoglobus fulgidus,3 northeast structural genomics consortium target att7
31c5icqA_
not modelled 7.0 13
PDB header:periplasmic binding protein
Chain: A: PDB Molecule:methylocystis parvus obbp mbne;
PDBTitle: methanobactin periplasmic binding protein
32c6epzA_
not modelled 6.8 13
PDB header:transport protein
Chain: A: PDB Molecule:periplasmic alpha-galactoside-binding protein;
PDBTitle: structure of the periplasmic binding protein melb (atu4661) in complex2 with melibiose from agrobacterium fabrum c58
33d1m1la_
not modelled 6.7 31
Fold:Suppressor of Fused, N-terminal domain
Superfamily:Suppressor of Fused, N-terminal domain
Family:Suppressor of Fused, N-terminal domain
34c2m6oA_
not modelled 5.8 30
PDB header:transcription
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: the actinobacterial transcription factor rbpa binds to the principal2 sigma subunit of rna polymerase
35c2k42B_
not modelled 5.8 43
PDB header:signaling protein
Chain: B: PDB Molecule:espfu;
PDBTitle: solution structure of the gtpase binding domain of wasp in2 complex with espfu, an ehec effector
36c3ftoA_
not modelled 5.7 8
PDB header:peptide binding protein
Chain: A: PDB Molecule:oligopeptide-binding protein oppa;
PDBTitle: crystal structure of oppa in a open conformation
37c1loiA_
not modelled 5.6 57
PDB header:hydrolase
Chain: A: PDB Molecule:cyclic 3',5'-amp specific phosphodiesterase rd1;
PDBTitle: n-terminal splice region of rat c-amp phosphodiesterase,2 nmr, 7 structures
38d1uaxa_
not modelled 5.5 14
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Ribonuclease H
39d3ct6a1
not modelled 5.4 14
Fold:PTS system fructose IIA component-like
Superfamily:PTS system fructose IIA component-like
Family:DhaM-like
40c2kvcA_
not modelled 5.3 45
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: solution structure of the mycobacterium tuberculosis protein rv0543c,2 a member of the duf3349 superfamily. seattle structural genomics3 center for infectious disease target mytud.17112.a

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below