Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3895c_(-)_4380631_4382118
DateSat Aug 10 22:05:08 BST 2019
Unique Job IDaa83ac4352c1228b
SequenceMPLSLSNRDQ ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:50.123 Y:65.350 Z:100.081
Model (left) based on template c4kk7A_
Top template information
PDB header:protein transport
Chain: A: PDB Molecule:esx-1 secretion system protein eccb1;
PDBTitle: structure of eccb1 from the type vii (esx-1) secretion system of2 mycobacterium tuberculosis.
Confidence and coverage
Confidence:100.0% Coverage: 77%
382 residues ( 77% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4kk7A_



100.0 35
PDB header:protein transport
Chain: A: PDB Molecule:esx-1 secretion system protein eccb1;
PDBTitle: structure of eccb1 from the type vii (esx-1) secretion system of2 mycobacterium tuberculosis.
2c5cyuA_



100.0 35
PDB header:membrane protein
Chain: A: PDB Molecule:conserved membrane protein;
PDBTitle: structure of the soluble domain of eccb1 from the mycobacterium2 smegmatis esx-1 secretion system.
3c6navI_



42.8 18
PDB header:structural protein
Chain: I: PDB Molecule:m9ud72;
PDBTitle: cryo-em reconstruction of sulfolobus islandicus lal14/1 pilus
4d2fb5a1



36.8 19
Fold:YojJ-like
Superfamily:YojJ-like
Family:YojJ-like
5c1k6nH_



30.3 22
PDB header:photosynthesis
Chain: H: PDB Molecule:photosynthetic reaction center h subunit;
PDBTitle: e(l212)a,d(l213)a double mutant structure of photosynthetic reaction2 center from rhodobacter sphaeroides
6d2i5nh1



30.3 20
Fold:PRC-barrel domain
Superfamily:PRC-barrel domain
Family:Photosynthetic reaction centre, H-chain, cytoplasmic domain
7c2i5nH_



23.6 19
PDB header:photosynthesis
Chain: H: PDB Molecule:reaction center protein h chain;
PDBTitle: 1.96 a x-ray structure of photosynthetic reaction center from2 rhodopseudomonas viridis:crystals grown by microfluidic technique
8c2wmmA_



21.1 16
PDB header:cell cycle
Chain: A: PDB Molecule:chromosome partition protein mukb;
PDBTitle: crystal structure of the hinge domain of mukb
9d1rzhh1



18.5 22
Fold:PRC-barrel domain
Superfamily:PRC-barrel domain
Family:Photosynthetic reaction centre, H-chain, cytoplasmic domain
10c2ixsB_



17.4 11
PDB header:hydrolase
Chain: B: PDB Molecule:sdai restriction endonuclease;
PDBTitle: structure of sdai restriction endonuclease
11c5xefA_



16.9 5
PDB header:chaperone
Chain: A: PDB Molecule:flagellar protein flis;
PDBTitle: crystal structure of flagellar chaperone from bacteria
12d1vh6a_



14.3 19
Fold:Four-helical up-and-down bundle
Superfamily:Flagellar export chaperone FliS
Family:Flagellar export chaperone FliS
13c1vh6A_



14.3 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:flagellar protein flis;
PDBTitle: crystal structure of a flagellar protein
14c3k1iA_



13.3 10
PDB header:chaperone
Chain: A: PDB Molecule:flagellar protein;
PDBTitle: crystal strcture of flis-hp1076 complex in h. pylori
15c5mrwL_



12.7 13
PDB header:hydrolase
Chain: L: PDB Molecule:potassium-transporting atpase kdpf subunit;
PDBTitle: structure of the kdpfabc complex
16c6hrbD_



12.7 13
PDB header:membrane protein
Chain: D: PDB Molecule:potassium-transporting atpase kdpf subunit;
PDBTitle: cryo-em structure of the kdpfabc complex in an e2 inward-facing state2 (state 2)
17c5mrwD_



12.7 13
PDB header:hydrolase
Chain: D: PDB Molecule:potassium-transporting atpase kdpf subunit;
PDBTitle: structure of the kdpfabc complex
18c5mrwH_



12.7 13
PDB header:hydrolase
Chain: H: PDB Molecule:potassium-transporting atpase kdpf subunit;
PDBTitle: structure of the kdpfabc complex
19c6hraD_



12.7 13
PDB header:membrane protein
Chain: D: PDB Molecule:potassium-transporting atpase kdpf subunit;
PDBTitle: cryo-em structure of the kdpfabc complex in an e1 outward-facing state2 (state 1)
20d1y7ma1



12.1 15
Fold:L,D-transpeptidase catalytic domain-like
Superfamily:L,D-transpeptidase catalytic domain-like
Family:L,D-transpeptidase catalytic domain-like
21c2ciuA_



not modelled 10.5 26
PDB header:protein transport
Chain: A: PDB Molecule:import inner membrane translocase subunit tim21
PDBTitle: structure of the ims domain of the mitochondrial import2 protein tim21 from s. cerevisiae
22d2f23a2



not modelled 10.0 45
Fold:FKBP-like
Superfamily:FKBP-like
Family:GreA transcript cleavage factor, C-terminal domain
23c2lf3A_



not modelled 9.2 56
PDB header:signaling protein
Chain: A: PDB Molecule:effector protein hopab3;
PDBTitle: solution nmr structure of hoppmal_281_385 from pseudomonas syringae2 pv. maculicola str. es4326, midwest center for structural genomics3 target apc40104.5 and northeast structural genomics consortium target4 pst2a
24c3c1zA_



not modelled 9.1 13
PDB header:dna binding protein
Chain: A: PDB Molecule:dna integrity scanning protein disa;
PDBTitle: structure of the ligand-free form of a bacterial dna damage sensor2 protein
25c3hshA_



not modelled 9.0 18
PDB header:protein binding
Chain: A: PDB Molecule:collagen alpha-1(xviii) chain;
PDBTitle: crystal structure of human collagen xviii trimerization domain2 (tetragonal crystal form)
26c6cfwE_



not modelled 8.9 11
PDB header:membrane protein
Chain: E: PDB Molecule:mbh subunit;
PDBTitle: cryoem structure of a respiratory membrane-bound hydrogenase
27c6ch3B_



not modelled 8.1 23
PDB header:structural protein
Chain: B: PDB Molecule:flagellar secretion chaperone flis,flagellin;
PDBTitle: crystal structure of the cytoplasmic domain of flha and flis-flic2 complex
28c6gyyB_



not modelled 7.6 21
PDB header:transferase
Chain: B: PDB Molecule:diadenylate cyclase;
PDBTitle: crystal structure of daca from staphylococcus aureus, n166c/t172c2 double mutant
29c3n3fB_



not modelled 7.6 21
PDB header:protein binding
Chain: B: PDB Molecule:collagen alpha-1(xv) chain;
PDBTitle: crystal structure of the human collagen xv trimerization domain: a2 potent trimerizing unit common to multiplexin collagens
30c2l02B_



not modelled 7.6 12
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of protein bt2368 from bacteroides2 thetaiotaomicron, northeast structural genomics consortium target3 btr375
31d1vqou1



not modelled 7.3 18
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Ribosomal protein L24e
32c3ccjU_



not modelled 7.3 18
PDB header:ribosome
Chain: U: PDB Molecule:50s ribosomal protein l24e;
PDBTitle: structure of anisomycin resistant 50s ribosomal subunit: 23s rrna2 mutation c2534u
33c3bmbB_



not modelled 7.1 29
PDB header:rna binding protein
Chain: B: PDB Molecule:regulator of nucleoside diphosphate kinase;
PDBTitle: crystal structure of a new rna polymerase interacting2 protein
34c6f0kA_



not modelled 7.0 18
PDB header:membrane protein
Chain: A: PDB Molecule:cytochrome c family protein;
PDBTitle: alternative complex iii
35d1ixsa_



not modelled 6.6 30
Fold:RuvA C-terminal domain-like
Superfamily:DNA helicase RuvA subunit, C-terminal domain
Family:DNA helicase RuvA subunit, C-terminal domain
36c2p4vA_



not modelled 6.0 27
PDB header:transcription
Chain: A: PDB Molecule:transcription elongation factor greb;
PDBTitle: crystal structure of the transcript cleavage factor, greb2 at 2.6a resolution
37d2zjru1



not modelled 5.9 20
Fold:L28p-like
Superfamily:L28p-like
Family:Ribosomal protein L28
38d2b3ga1



not modelled 5.9 16
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
39c2kncA_



not modelled 5.9 17
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
40c2a7oA_



not modelled 5.8 15
PDB header:transcription
Chain: A: PDB Molecule:huntingtin interacting protein b;
PDBTitle: solution structure of the hset2/hypb sri domain
41c2k9yA_



not modelled 5.7 3
PDB header:transferase
Chain: A: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
42c2k9yB_



not modelled 5.7 3
PDB header:transferase
Chain: B: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
43c4jonA_



not modelled 5.5 35
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:centrosomal protein of 170 kda;
PDBTitle: crystal structure of a centrosomal protein 170kda, transcript variant2 beta (cep170) from homo sapiens at 2.15 a resolution (psi community3 target, sundstrom)
44c5dn6P_



not modelled 5.5 18
PDB header:hydrolase
Chain: P: PDB Molecule:atp synthase f0 subcomplex c subunit;
PDBTitle: atp synthase from paracoccus denitrificans
45d2etna2



not modelled 5.3 42
Fold:FKBP-like
Superfamily:FKBP-like
Family:GreA transcript cleavage factor, C-terminal domain
46c2mhgA_



not modelled 5.2 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: nmr structure of protein np_254181.1 from pseudomonas aeruginosa pa01
47c2o35A_



not modelled 5.1 26
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein duf1244;
PDBTitle: protein of unknown function (duf1244) from sinorhizobium meliloti
48d2o35a1



not modelled 5.1 26
Fold:SMc04008-like
Superfamily:SMc04008-like
Family:SMc04008-like
49c2etnA_



not modelled 5.1 42
PDB header:transcription
Chain: A: PDB Molecule:anti-cleavage anti-grea transcription factor
PDBTitle: crystal structure of thermus aquaticus gfh1
50c2zkru_



not modelled 5.0 35
PDB header:ribosomal protein/rna
Chain: U: PDB Molecule:rna expansion segment es41;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map

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Transmembrane helix prediction 

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