Phyre 2 Results for RVBD3898c_(-)_4383831

Email	mdejesus@rockefeller.edu
Description	RVBD3898c_(-)_4383831_4384163
Date	Sat Aug 10 22:05:08 BST 2019
Unique Job ID	e31aea6339d24073
Sequence	MTGDQNPAPG ... Download FASTA
Job Type	normal
Job Expiry

Summary

Top model

Image coloured by rainbow N → C terminus

Model dimensions (Å):

X:14.142 Y:18.808 Z:16.210

Model (left) based on template c2vs0B_

Top template information

PDB header:cell invasion
Chain: B: PDB Molecule:virulence factor esxa;
PDBTitle: structural analysis of homodimeric staphylococcal aureus2 virulence factor esxa

Confidence and coverage

Confidence:

24.2%

Coverage:

10%

11 residues ( 10% of your sequence) have been modelled with 24.2% confidence by the single highest scoring template.

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Warning: 55% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.

3D viewing

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Sequence analysis

Download FASTA version

Secondary structure and disorder prediction [Show]

Domain analysis [Show]

Rank Aligned region

PDB 2vs0 chain B

3D model

Region: 17 - 27
Aligned: 11
Modelled: 11
Confidence: 24.2%
Identity: 36%
PDB header:cell invasion
Chain: B: PDB Molecule:virulence factor esxa;
PDBTitle: structural analysis of homodimeric staphylococcal aureus2 virulence factor esxa

Phyre2

PDB 6joo chain A

3D model

Region: 77 - 87
Aligned: 11
Modelled: 11
Confidence: 16.0%
Identity: 73%
PDB header:hydrolase/dna/rna
Chain: A: PDB Molecule:crispr-associated protein,crispr-associated endonuclease
PDBTitle: crystal structure of corynebacterium diphtheriae cas9 in complex with2 sgrna and target dna

Phyre2

PDB 6gyg chain A

3D model

Region: 17 - 27
Aligned: 11
Modelled: 11
Confidence: 15.3%
Identity: 36%
PDB header:transcription
Chain: A: PDB Molecule:transcription regulator reg576;
PDBTitle: x-ray structure of the apo form of the establishement gene regulator2 reg576 of the g+ plasmid p576

Phyre2

PDB 6a0c chain B

3D model

Region: 30 - 49
Aligned: 20
Modelled: 20
Confidence: 12.4%
Identity: 35%
PDB header:structural protein
Chain: B: PDB Molecule:collagen type iii peptide;
PDBTitle: structure of a triple-helix region of human collagen type iii

Phyre2

PDB 5zbi chain B

3D model

Region: 5 - 30
Aligned: 26
Modelled: 26
Confidence: 12.2%
Identity: 38%
PDB header:plant protein
Chain: B: PDB Molecule:peptide asparaginyl ligase;
PDBTitle: crystal structure of asparaginyl endopeptidases from viola canadensis

Phyre2

PDB 6a0c chain C

3D model

Region: 30 - 49
Aligned: 20
Modelled: 20
Confidence: 11.6%
Identity: 35%
PDB header:structural protein
Chain: C: PDB Molecule:collagen type iii peptide;
PDBTitle: structure of a triple-helix region of human collagen type iii

Phyre2

PDB 6a0c chain A

3D model

Region: 30 - 49
Aligned: 20
Modelled: 20
Confidence: 11.6%
Identity: 35%
PDB header:structural protein
Chain: A: PDB Molecule:collagen type iii peptide;
PDBTitle: structure of a triple-helix region of human collagen type iii

Phyre2

PDB 4iog chain D

3D model

Region: 17 - 27
Aligned: 11
Modelled: 11
Confidence: 11.3%
Identity: 55%
PDB header:unknown function
Chain: D: PDB Molecule:secreted protein esxb;
PDBTitle: the crystal structure of a secreted protein esxb (wild-type, in p212 space group) from bacillus anthracis str. sterne

Phyre2

PDB 3ter chain A

3D model

Region: 69 - 86
Aligned: 18
Modelled: 18
Confidence: 10.1%
Identity: 17%
PDB header:metal binding protein
Chain: A: PDB Molecule:mammalian stromal interaction molecule-1;
PDBTitle: crystal structure of soar domain with inhibition helix from c. elegans

Phyre2

PDB 4fgu chain B

3D model

Region: 13 - 30
Aligned: 18
Modelled: 18
Confidence: 9.2%
Identity: 50%
PDB header:hydrolase
Chain: B: PDB Molecule:legumain;
PDBTitle: crystal structure of prolegumain

Phyre2

PDB 6hg7 chain C

Region: 1 - 14
Aligned: 14
Modelled: 14
Confidence: 9.1%
Identity: 64%
PDB header:structural protein
Chain: C: PDB Molecule:collagen alpha-1(ii) chain;
PDBTitle: crystal structure of a collagen ii fragment containing the binding2 site of pedf and comp, (pog)4-lkg hrg ftg lqg-pog(4)

Phyre2

PDB 6hg7 chain A

3D model

Region: 1 - 14
Aligned: 14
Modelled: 14
Confidence: 9.1%
Identity: 64%
PDB header:structural protein
Chain: A: PDB Molecule:collagen alpha-1(ii) chain;
PDBTitle: crystal structure of a collagen ii fragment containing the binding2 site of pedf and comp, (pog)4-lkg hrg ftg lqg-pog(4)

Phyre2

PDB 6hg7 chain B

3D model

Region: 1 - 14
Aligned: 14
Modelled: 14
Confidence: 9.1%
Identity: 64%
PDB header:structural protein
Chain: B: PDB Molecule:collagen alpha-1(ii) chain;
PDBTitle: crystal structure of a collagen ii fragment containing the binding2 site of pedf and comp, (pog)4-lkg hrg ftg lqg-pog(4)

Phyre2

PDB 3gvm chain A

3D model

Region: 17 - 27
Aligned: 11
Modelled: 11
Confidence: 8.8%
Identity: 55%
PDB header:viral protein
Chain: A: PDB Molecule:putative uncharacterized protein sag1039;
PDBTitle: structure of the homodimeric wxg-100 family protein from streptococcus2 agalactiae

Phyre2

PDB 3teq chain B

3D model

Region: 69 - 86
Aligned: 18
Modelled: 18
Confidence: 6.7%
Identity: 33%
PDB header:signaling protein
Chain: B: PDB Molecule:stromal interaction molecule 1;
PDBTitle: crystal structure of soar domain

Phyre2

PDB 1rqb chain A domain 1

Region: 14 - 21
Aligned: 8
Modelled: 8
Confidence: 5.7%
Identity: 63%
Fold: RuvA C-terminal domain-like
Superfamily: post-HMGL domain-like
Family: Conserved carboxylase domain

Phyre2

PDB 5wsx chain A

3D model

Region: 1 - 29
Aligned: 18
Modelled: 29
Confidence: 5.3%
Identity: 61%
PDB header:hydrolase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: the crystal structure of sav606

Phyre2

1
c2vs0B_

2
c6jooA_

3
c6gygA_

4
c6a0cB_

5
c5zbiB_

6
c6a0cC_

7
c6a0cA_

8
c4iogD_

9
c3terA_

10
c4fguB_

11
c6hg7C_

12
c6hg7A_

13
c6hg7B_

14
c3gvmA_

15
c3teqB_

16
d1rqba1

17
c5wsxA_