Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3900c_(-)_4385551_4386486
DateSat Aug 10 22:05:08 BST 2019
Unique Job ID1d7c6386f7c3dbb3
SequenceVVAADLPPGR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:27.749 Y:77.504 Z:34.789
Model (left) based on template c5xbjA_
Top template information
PDB header:biosynthetic protein
Chain: A: PDB Molecule:flagellar hook-associated protein flgk;
PDBTitle: the structure of the flagellar hook junction protein hap1 (flgk) from2 campylobacter jejuni
Confidence and coverage
Confidence: 31.6% Coverage: 25%
79 residues ( 25% of your sequence) have been modelled with 31.6% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5xbjA_



31.6 20
PDB header:biosynthetic protein
Chain: A: PDB Molecule:flagellar hook-associated protein flgk;
PDBTitle: the structure of the flagellar hook junction protein hap1 (flgk) from2 campylobacter jejuni
2c1mg1A_



31.2 14
PDB header:viral protein
Chain: A: PDB Molecule:protein (htlv-1 gp21 ectodomain/maltose-binding protein
PDBTitle: htlv-1 gp21 ectodomain/maltose-binding protein chimera
3c2p58C_



26.2 28
PDB header:transport protein/chaperone
Chain: C: PDB Molecule:putative type iii secretion protein yscg;
PDBTitle: structure of the yersinia pestis type iii secretion system needle2 protein yscf in complex with its chaperones ysce/yscg
4c3hm5A_



25.6 30
PDB header:transcription
Chain: A: PDB Molecule:dna methyltransferase 1-associated protein 1;
PDBTitle: sant domain of human dna methyltransferase 1 associated protein 1
5c2kngA_



24.3 62
PDB header:dna binding protein
Chain: A: PDB Molecule:protein lsr2;
PDBTitle: solution structure of c-domain of lsr2
6c2vs0B_



23.5 14
PDB header:cell invasion
Chain: B: PDB Molecule:virulence factor esxa;
PDBTitle: structural analysis of homodimeric staphylococcal aureus2 virulence factor esxa
7c4ut1A_



21.4 13
PDB header:motor protein
Chain: A: PDB Molecule:flagellar hook-associated protein;
PDBTitle: the structure of the flagellar hook junction protein flgk2 from burkholderia pseudomallei
8c6odmK_



20.1 20
PDB header:viral protein
Chain: K: PDB Molecule:capsid vertex component 2;
PDBTitle: herpes simplex virus type 1 (hsv-1) portal vertex-adjacent2 capsid/catc, asymmetric unit
9c4myyA_



19.1 50
PDB header:protein binding
Chain: A: PDB Molecule:curg, curh fusion protein;
PDBTitle: structure of a class 2 docking domain complex from modules curg and2 curh of the curacin a polyketide synthase
10c2ynyC_



17.5 20
PDB header:membrane protein
Chain: C: PDB Molecule:general control protein gcn4, putative inner membrane
PDBTitle: salmonella enterica sada 255-302 fused to gcn4 adaptors (sadak1)
11d1r9da_



13.3 17
Fold:PFL-like glycyl radical enzymes
Superfamily:PFL-like glycyl radical enzymes
Family:PFL-like
12c3m91D_



11.8 47
PDB header:hydrolase regulator
Chain: D: PDB Molecule:prokaryotic ubiquitin-like protein pup;
PDBTitle: crystal structure of the prokaryotic ubiquitin-like protein (pup)2 complexed with the amino terminal coiled coil of the mycobacterium3 tuberculosis proteasomal atpase mpa
13c3m91B_



11.8 47
PDB header:hydrolase regulator
Chain: B: PDB Molecule:prokaryotic ubiquitin-like protein pup;
PDBTitle: crystal structure of the prokaryotic ubiquitin-like protein (pup)2 complexed with the amino terminal coiled coil of the mycobacterium3 tuberculosis proteasomal atpase mpa
14c2d4yA_



11.6 15
PDB header:structural protein
Chain: A: PDB Molecule:flagellar hook-associated protein 1;
PDBTitle: crystal structure of a 49k fragment of hap1 (flgk)
15c3pppA_



11.4 2
PDB header:transport protein
Chain: A: PDB Molecule:glycine betaine/carnitine/choline-binding protein;
PDBTitle: structures of the substrate-binding protein provide insights into the2 multiple compatible solutes binding specificities of bacillus3 subtilis abc transporter opuc
16d1nh2b_



11.3 26
Fold:Transcription factor IIA (TFIIA), alpha-helical domain
Superfamily:Transcription factor IIA (TFIIA), alpha-helical domain
Family:Transcription factor IIA (TFIIA), alpha-helical domain
17c1wwuA_



10.7 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein flj21935;
PDBTitle: solution structure of the sam_pnt domain of human protein2 flj21935
18c4inmV_



10.5 60
PDB header:structural protein/dna
Chain: V: PDB Molecule:cenp-c;
PDBTitle: crystal structure of cenp-c in complex with the nucleosome core2 particle
19c4x23V_



10.5 60
PDB header:structural protein/dna
Chain: V: PDB Molecule:cenp-c;
PDBTitle: crystal structure of cenp-c in complex with the nucleosome core2 particle
20c4y6tD_



10.2 52
PDB header:structural protein
Chain: D: PDB Molecule:coat protein;
PDBTitle: structure of tobacco streak virus coat protein dimer at 2.4 angstroms2 resolution
21d1uptb_



not modelled 9.5 46
Fold:GRIP domain
Superfamily:GRIP domain
Family:GRIP domain
22c2e8mA_



not modelled 9.4 25
PDB header:signaling protein
Chain: A: PDB Molecule:epidermal growth factor receptor kinase
PDBTitle: solution structure of the c-terminal sam-domain of2 epidermal growth receptor pathway substrate 8
23d2dkya1



not modelled 9.4 42
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:Variant SAM domain
24c5w54A_



not modelled 9.3 67
PDB header:cytokine
Chain: A: PDB Molecule:stress response peptide-2;
PDBTitle: cytokine-like stress response peptide-2 in manduca sexta
25c4n4jA_



not modelled 9.1 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:hydroxylamine oxidoreductase;
PDBTitle: kuenenia stuttgartiensis hydroxylamine oxidoreductase
26d2h80a1



not modelled 8.7 42
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:Variant SAM domain
27c4x23X_



not modelled 8.4 60
PDB header:structural protein/dna
Chain: X: PDB Molecule:cenp-c;
PDBTitle: crystal structure of cenp-c in complex with the nucleosome core2 particle
28d1wa8a1



not modelled 8.3 19
Fold:Ferritin-like
Superfamily:EsxAB dimer-like
Family:ESAT-6 like
29c5vtlA_



not modelled 8.3 14
PDB header:unknown function
Chain: A: PDB Molecule:tb427.07.360- putative uncharacterized metacyclic invariant
PDBTitle: structure of metacyclic invariant surface protein , tb427.07.360, from2 trypanosoma brucei.
30c4inmX_



not modelled 7.9 60
PDB header:structural protein/dna
Chain: X: PDB Molecule:cenp-c;
PDBTitle: crystal structure of cenp-c in complex with the nucleosome core2 particle
31c3ewqA_



not modelled 7.6 20
PDB header:hydrolase
Chain: A: PDB Molecule:non-structural protein 3;
PDBTitle: hcov-229e nsp3 adrp domain
32c5hudA_



not modelled 7.5 30
PDB header:transferase/isomerase
Chain: A: PDB Molecule:3-deoxy-d-arabino-heptulosonate 7-phosphate (dahp)
PDBTitle: non-covalent complex of and dahp synthase and chorismate mutase from2 corynebacterium glutamicum with bound transition state analog
33c2bcwC_



not modelled 7.1 22
PDB header:ribosome
Chain: C: PDB Molecule:elongation factor g;
PDBTitle: coordinates of the n-terminal domain of ribosomal protein l11,c-2 terminal domain of ribosomal protein l7/l12 and a portion of the g'3 domain of elongation factor g, as fitted into cryo-em map of an4 escherichia coli 70s*ef-g*gdp*fusidic acid complex
34c5azaA_



not modelled 7.1 18
PDB header:sugar binding protein, transferase
Chain: A: PDB Molecule:maltose-binding periplasmic protein,oligosaccharyl
PDBTitle: crystal structure of mbp-saglb fusion protein with a 20-residue spacer2 in the connector helix
35c2zs6B_



not modelled 7.1 52
PDB header:toxin
Chain: B: PDB Molecule:hemagglutinin components ha3;
PDBTitle: ha3 subcomponent of botulinum type c progenitor toxin
36c5t87D_



not modelled 6.7 69
PDB header:toxin
Chain: D: PDB Molecule:cdii immunity protein;
PDBTitle: crystal structure of cdi complex from cupriavidus taiwanensis lmg2 19424
37c3j47U_



not modelled 6.6 16
PDB header:protein binding
Chain: U: PDB Molecule:26s proteasome regulatory subunit rpn8;
PDBTitle: formation of an intricate helical bundle dictates the assembly of the2 26s proteasome lid
38c2vriA_



not modelled 6.4 23
PDB header:viral protein
Chain: A: PDB Molecule:non-structural protein 3;
PDBTitle: structure of the nsp3 x-domain of human coronavirus nl63
39d2b7oa1



not modelled 6.2 29
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class-II DAHP synthetase
40c1rijA_



not modelled 6.1 41
PDB header:de novo protein
Chain: A: PDB Molecule:e6apn1 peptide;
PDBTitle: e6-bind trp-cage (e6apn1)
41c3zbhC_



not modelled 6.0 24
PDB header:unknown function
Chain: C: PDB Molecule:esxa;
PDBTitle: geobacillus thermodenitrificans esxa crystal form i
42c2csdB_



not modelled 5.9 31
PDB header:isomerase
Chain: B: PDB Molecule:topoisomerase v;
PDBTitle: crystal structure of topoisomerase v (61 kda fragment)
43d1uxya2



not modelled 5.8 32
Fold:Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
Superfamily:Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
Family:Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
44c5ydnA_



not modelled 5.6 25
PDB header:viral protein
Chain: A: PDB Molecule:gene product j;
PDBTitle: mu pahge neck subunit
45c3htrB_



not modelled 5.5 28
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized prc-barrel domain protein;
PDBTitle: crystal structure of prc-barrel domain protein from2 rhodopseudomonas palustris
46c1m1jA_



not modelled 5.5 16
PDB header:blood clotting
Chain: A: PDB Molecule:fibrinogen alpha subunit;
PDBTitle: crystal structure of native chicken fibrinogen with two different2 bound ligands
47c5n2uC_



not modelled 5.4 22
PDB header:viral protein
Chain: C: PDB Molecule:nucleoprotein;
PDBTitle: influenza d virus nucleoprotein
48c3qflA_



not modelled 5.4 18
PDB header:protein binding
Chain: A: PDB Molecule:mla10;
PDBTitle: coiled-coil domain-dependent homodimerization of intracellular mla2 immune receptors defines a minimal functional module for triggering3 cell death
49c3a9kC_



not modelled 5.3 38
PDB header:signaling protein/metal binding protein
Chain: C: PDB Molecule:mitogen-activated protein kinase kinase kinase 7-
PDBTitle: crystal structure of the mouse tab3-nzf in complex with2 lys63-linked di-ubiquitin
50c3m9dQ_



not modelled 5.2 47
PDB header:chaperone
Chain: Q: PDB Molecule:prokaryotic ubiquitin-like protein pup;
PDBTitle: crystal structure of the prokaryotic ubiquintin-like protein pup2 complexed with the hexameric proteasomal atpase mpa which includes3 the amino terminal coiled coil domain and the inter domain
51c3m9dP_



not modelled 5.2 47
PDB header:chaperone
Chain: P: PDB Molecule:prokaryotic ubiquitin-like protein pup;
PDBTitle: crystal structure of the prokaryotic ubiquintin-like protein pup2 complexed with the hexameric proteasomal atpase mpa which includes3 the amino terminal coiled coil domain and the inter domain
52c3r6uA_



not modelled 5.2 0
PDB header:transport protein
Chain: A: PDB Molecule:choline-binding protein;
PDBTitle: crystal structure of choline binding protein opubc from bacillus2 subtilis

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite