Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3902c_(-)_4387543_4388073
DateSat Aug 10 22:05:09 BST 2019
Unique Job IDf77c6e418681c1fc
SequenceVTIGVDLSTD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:37.095 Y:45.763 Z:48.571
Model (left) based on template c4o6gA_
Top template information
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: rv3902c from m. tuberculosis
Confidence and coverage
Confidence:100.0% Coverage: 98%
173 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4o6gA_



100.0 100
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: rv3902c from m. tuberculosis
2c4aqzA_



44.0 11
PDB header:transport protein
Chain: A: PDB Molecule:type iv pilus biogenesis and competence protein pilq;
PDBTitle: b2 domain of neisseria meningitidis pilus assembly protein pilq
3c3fymA_



43.3 8
PDB header:dna binding protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: the 1a structure of ymfm, a putative dna-binding membrane2 protein from staphylococcus aureus
4c2g7rA_



29.6 28
PDB header:hydrolase
Chain: A: PDB Molecule:mucosa-associated lymphoid tissue lymphoma translocation
PDBTitle: x-ray structure of the death domain of the human mucosa associated2 lymphoid tissue lymphoma translocation protein 1
5d2ofya1



28.3 16
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
6c4o6xA_



23.1 23
PDB header:protein binding
Chain: A: PDB Molecule:ankyrin-3;
PDBTitle: crystal structure of human ankyrin g death domain
7d1r69a_



20.9 21
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
8c5k2lA_



19.1 20
PDB header:hydrolase
Chain: A: PDB Molecule:chitinase, lysozyme;
PDBTitle: crystal structure of lysm domain from volvox carteri chitinase
9c2rfpA_



17.2 16
PDB header:hydrolase
Chain: A: PDB Molecule:putative ntp pyrophosphohydrolase;
PDBTitle: crystal structure of putative ntp pyrophosphohydrolase2 (yp_001813558.1) from exiguobacterium sibiricum 255-15 at 1.74 a3 resolution
10c3dkmA_



15.9 25
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase hectd1;
PDBTitle: crystal structure of the hectd1 cph domain
11c5wllD_



15.1 45
PDB header:de novo protein
Chain: D: PDB Molecule:helical bundle 4dh1;
PDBTitle: de novo design of polynuclear transition metal clusters in helix2 bundles-4dh1
12c5wllA_



15.1 45
PDB header:de novo protein
Chain: A: PDB Molecule:helical bundle 4dh1;
PDBTitle: de novo design of polynuclear transition metal clusters in helix2 bundles-4dh1
13c5wllC_



15.1 45
PDB header:de novo protein
Chain: C: PDB Molecule:helical bundle 4dh1;
PDBTitle: de novo design of polynuclear transition metal clusters in helix2 bundles-4dh1
14c5wllB_



15.1 45
PDB header:de novo protein
Chain: B: PDB Molecule:helical bundle 4dh1;
PDBTitle: de novo design of polynuclear transition metal clusters in helix2 bundles-4dh1
15c5wljD_



14.9 45
PDB header:de novo protein
Chain: D: PDB Molecule:de novo metal binding helical bundle;
PDBTitle: de novo design of polynuclear transition metal clusters in helix2 bundles-4eh1
16c5wljA_



14.9 45
PDB header:de novo protein
Chain: A: PDB Molecule:de novo metal binding helical bundle;
PDBTitle: de novo design of polynuclear transition metal clusters in helix2 bundles-4eh1
17c5wljB_



14.9 45
PDB header:de novo protein
Chain: B: PDB Molecule:de novo metal binding helical bundle;
PDBTitle: de novo design of polynuclear transition metal clusters in helix2 bundles-4eh1
18c5wljC_



14.9 45
PDB header:de novo protein
Chain: C: PDB Molecule:de novo metal binding helical bundle;
PDBTitle: de novo design of polynuclear transition metal clusters in helix2 bundles-4eh1
19d1sq8a_



14.6 18
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
20c4jglA_



14.1 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a streptavidin-like protein (bacegg_01519) from2 bacteroides eggerthii dsm 20697 at 1.25 a resolution
21c6c5rF_



not modelled 12.1 18
PDB header:cytosolic protein
Chain: F: PDB Molecule:calcium uniporter;
PDBTitle: crystal structure of the soluble domain of the mitochondrial calcium2 uniporter
22c5wlmC_



not modelled 11.3 50
PDB header:de novo protein
Chain: C: PDB Molecule:helical bundle 4dh2;
PDBTitle: de novo design of polynuclear transition metal clusters in helix2 bundles-4dh2
23c5wlmD_



not modelled 11.3 50
PDB header:de novo protein
Chain: D: PDB Molecule:helical bundle 4dh2;
PDBTitle: de novo design of polynuclear transition metal clusters in helix2 bundles-4dh2
24c5wlmA_



not modelled 11.3 50
PDB header:de novo protein
Chain: A: PDB Molecule:helical bundle 4dh2;
PDBTitle: de novo design of polynuclear transition metal clusters in helix2 bundles-4dh2
25c5wlmB_



not modelled 11.3 50
PDB header:de novo protein
Chain: B: PDB Molecule:helical bundle 4dh2;
PDBTitle: de novo design of polynuclear transition metal clusters in helix2 bundles-4dh2
26c5wlkB_



not modelled 11.2 50
PDB header:de novo protein
Chain: B: PDB Molecule:helical bundle 4eh2;
PDBTitle: de novo design of polynuclear transition metal clusters in helix2 bundles-4eh2
27c5wlkC_



not modelled 11.2 50
PDB header:de novo protein
Chain: C: PDB Molecule:helical bundle 4eh2;
PDBTitle: de novo design of polynuclear transition metal clusters in helix2 bundles-4eh2
28c5wlkD_



not modelled 11.2 50
PDB header:de novo protein
Chain: D: PDB Molecule:helical bundle 4eh2;
PDBTitle: de novo design of polynuclear transition metal clusters in helix2 bundles-4eh2
29c5wlkA_



not modelled 11.2 50
PDB header:de novo protein
Chain: A: PDB Molecule:helical bundle 4eh2;
PDBTitle: de novo design of polynuclear transition metal clusters in helix2 bundles-4eh2
30c2ewtA_



not modelled 10.8 30
PDB header:dna binding protein
Chain: A: PDB Molecule:putative dna-binding protein;
PDBTitle: crystal structure of the dna-binding domain of bldd
31d1w2ya_



not modelled 10.7 13
Fold:all-alpha NTP pyrophosphatases
Superfamily:all-alpha NTP pyrophosphatases
Family:Type II deoxyuridine triphosphatase
32c3kxaD_



not modelled 10.5 26
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of ngo0477 from neisseria gonorrhoeae
33d1de4c1



not modelled 10.3 23
Fold:N-cbl like
Superfamily:Transferrin receptor-like dimerisation domain
Family:Transferrin receptor-like dimerisation domain
34c3iraA_



not modelled 10.2 30
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved protein;
PDBTitle: the crystal structure of one domain of the conserved protein from2 methanosarcina mazei go1
35c3k1qC_



not modelled 9.8 14
PDB header:
PDB COMPND:
36c4gqmA_



not modelled 9.8 19
PDB header:unknown function
Chain: A: PDB Molecule:ct009;
PDBTitle: crystal structure of a helix-turn-helix containing hypothetical2 protein (ct009) from chlamydia trachomatis in a sub-domain swap3 conformation
37c3n2oA_



not modelled 9.6 11
PDB header:lyase
Chain: A: PDB Molecule:biosynthetic arginine decarboxylase;
PDBTitle: x-ray crystal structure of arginine decarboxylase complexed with2 arginine from vibrio vulnificus
38c3ox4D_



not modelled 9.1 12
PDB header:oxidoreductase
Chain: D: PDB Molecule:alcohol dehydrogenase 2;
PDBTitle: structures of iron-dependent alcohol dehydrogenase 2 from zymomonas2 mobilis zm4 complexed with nad cofactor
39c3k1qB_



not modelled 9.0 14
PDB header:
PDB COMPND:
40c3bs3A_



not modelled 8.9 24
PDB header:dna binding protein
Chain: A: PDB Molecule:putative dna-binding protein;
PDBTitle: crystal structure of a putative dna-binding protein from bacteroides2 fragilis
41c5m41A_



not modelled 8.8 31
PDB header:toxin
Chain: A: PDB Molecule:nigritoxine;
PDBTitle: crystal structure of nigritoxine
42c2oo4B_



not modelled 8.3 22
PDB header:cell cycle,signaling protein
Chain: B: PDB Molecule:neurogenic locus notch homolog protein 2;
PDBTitle: structure of lnr-hd (negative regulatory region) from human notch 2
43c4aw7A_



not modelled 8.2 60
PDB header:hydrolase
Chain: A: PDB Molecule:gh86a beta-porphyranase;
PDBTitle: bpgh86a: a beta-porphyranase of glycoside hydrolase family 86 from the2 human gut bacterium bacteroides plebeius
44c3nzqB_



not modelled 7.5 19
PDB header:lyase
Chain: B: PDB Molecule:biosynthetic arginine decarboxylase;
PDBTitle: crystal structure of biosynthetic arginine decarboxylase adc (spea)2 from escherichia coli, northeast structural genomics consortium3 target er600
45d2croa_



not modelled 7.4 13
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
46c2cseW_



not modelled 7.3 14
PDB header:virus
Chain: W: PDB Molecule:major core protein lambda 1;
PDBTitle: features of reovirus outer-capsid protein mu1 revealed by2 electron and image reconstruction of the virion at 7.0-a3 resolution
47c3m62B_



not modelled 7.1 14
PDB header:ligase/protein binding
Chain: B: PDB Molecule:uv excision repair protein rad23;
PDBTitle: crystal structure of ufd2 in complex with the ubiquitin-like (ubl)2 domain of rad23
48d1qr0a1



not modelled 7.1 25
Fold:4'-phosphopantetheinyl transferase
Superfamily:4'-phosphopantetheinyl transferase
Family:4'-Phosphopantetheinyl transferase SFP
49c3omtA_



not modelled 6.7 27
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: putative antitoxin component, chu_2935 protein, from xre family from2 prevotella buccae.
50c3gzrA_



not modelled 6.6 16
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein with a ntf2-like fold;
PDBTitle: crystal structure of an uncharacterized protein with a cystatin-like2 fold (cc_2572) from caulobacter vibrioides at 1.40 a resolution
51d2icta1



not modelled 6.6 14
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
52c2ctoA_



not modelled 6.5 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:novel protein;
PDBTitle: solution structure of the hmg box like domain from human2 hypothetical protein flj14904
53d2dk3a1



not modelled 6.5 25
Fold:SH3-like barrel
Superfamily:Mib/herc2 domain-like
Family:Mib/herc2 domain
54c4ex8A_



not modelled 6.4 19
PDB header:ligase
Chain: A: PDB Molecule:alna;
PDBTitle: crystal structure of the prealnumycin c-glycosynthase alna
55c5kvrA_



not modelled 6.4 24
PDB header:translation
Chain: A: PDB Molecule:pyruvate dehydrogenase complex repressor;
PDBTitle: x-ray crystal structure of a fragment (1-75) of a transcriptional2 regulator pdhr from escherichia coli cft073
56c4gijC_



not modelled 6.2 29
PDB header:hydrolase
Chain: C: PDB Molecule:pseudouridine-5'-phosphate glycosidase;
PDBTitle: crystal structure of pseudouridine monophosphate glycosidase complexed2 with sulfate
57d1vkma_



not modelled 6.0 24
Fold:Indigoidine synthase A-like
Superfamily:Indigoidine synthase A-like
Family:Indigoidine synthase A-like
58c3shgB_



not modelled 5.9 26
PDB header:transferase/protein binding
Chain: B: PDB Molecule:vbha;
PDBTitle: vbht fic protein from bartonella schoenbuchensis in complex with vbha2 antitoxin
59c3zhiA_



not modelled 5.7 24
PDB header:transcription
Chain: A: PDB Molecule:ci;
PDBTitle: n-terminal domain of the ci repressor from bacteriophage tp901-1
60d1wgga_



not modelled 5.6 21
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
61c4maiA_



not modelled 5.6 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:aa11 lytic polysaccharide monooxygenase;
PDBTitle: structure of aspergillus oryzae aa11 lytic polysaccharide2 monooxygenase with cu(i)
62d2csba5



not modelled 5.5 19
Fold:Topoisomerase V catalytic domain-like
Superfamily:Topoisomerase V catalytic domain-like
Family:Topoisomerase V catalytic domain-like
63d16vpa_



not modelled 5.4 22
Fold:Conserved core of transcriptional regulatory protein vp16
Superfamily:Conserved core of transcriptional regulatory protein vp16
Family:Conserved core of transcriptional regulatory protein vp16
64c3t76A_



not modelled 5.4 27
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator vanug;
PDBTitle: crystal structure of transcriptional regulator vanug, form ii
65d3e11a1



not modelled 5.3 12
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:TTHA0227-like
66c2of5K_



not modelled 5.3 11
PDB header:apoptosis
Chain: K: PDB Molecule:leucine-rich repeat and death domain-containing protein;
PDBTitle: oligomeric death domain complex
67d3bi1a1



not modelled 5.2 31
Fold:N-cbl like
Superfamily:Transferrin receptor-like dimerisation domain
Family:Transferrin receptor-like dimerisation domain

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