Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3903c_(-)_4388070_4390610
DateSat Aug 10 22:05:09 BST 2019
Unique Job ID3b80d6d62dd878a9
SequenceMAPLAVDPAA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:49.189 Y:48.489 Z:51.127
Model (left) based on template c4qlpB_
Top template information
PDB header:hydrolase/protein binding
Chain: B: PDB Molecule:alanine and proline rich protein, tuberculosis necrotizing
PDBTitle: atomic structure of tuberculosis necrotizing toxin (tnt) complexed2 with its immunity factor ift
Confidence and coverage
Confidence:100.0% Coverage: 24%
199 residues ( 24% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
443 residues ( 52%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
Warning: 51% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4qlpB_
100.0 98
PDB header:hydrolase/protein binding
Chain: B: PDB Molecule:alanine and proline rich protein, tuberculosis necrotizing
PDBTitle: atomic structure of tuberculosis necrotizing toxin (tnt) complexed2 with its immunity factor ift
2c2g38B_
97.0 13
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:ppe family protein;
PDBTitle: a pe/ppe protein complex from mycobacterium tuberculosis
3d2g38b1
97.0 13
Fold:Ferritin-like
Superfamily:PE/PPE dimer-like
Family:PPE
4c4iogD_
95.6 20
PDB header:unknown function
Chain: D: PDB Molecule:secreted protein esxb;
PDBTitle: the crystal structure of a secreted protein esxb (wild-type, in p212 space group) from bacillus anthracis str. sterne
5c5xfsB_
94.0 14
PDB header:protein transport
Chain: B: PDB Molecule:ppe family protein ppe15;
PDBTitle: crystal structure of pe8-ppe15 in complex with espg5 from m.2 tuberculosis
6c3zbhC_
93.6 8
PDB header:unknown function
Chain: C: PDB Molecule:esxa;
PDBTitle: geobacillus thermodenitrificans esxa crystal form i
7c2vs0B_
93.4 12
PDB header:cell invasion
Chain: B: PDB Molecule:virulence factor esxa;
PDBTitle: structural analysis of homodimeric staphylococcal aureus2 virulence factor esxa
8c3gvmA_
93.2 15
PDB header:viral protein
Chain: A: PDB Molecule:putative uncharacterized protein sag1039;
PDBTitle: structure of the homodimeric wxg-100 family protein from streptococcus2 agalactiae
9d1wa8a1
93.0 18
Fold:Ferritin-like
Superfamily:EsxAB dimer-like
Family:ESAT-6 like
10c4lwsA_
91.1 13
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
11d1eq1a_
82.5 13
Fold:Apolipophorin-III
Superfamily:Apolipophorin-III
Family:Apolipophorin-III
12c4b1vN_
69.6 73
PDB header:structural protein
Chain: N: PDB Molecule:phosphatase and actin regulator 1;
PDBTitle: structure of the phactr1 rpel-n domain bound to g-actin
13c4b1vM_
69.6 73
PDB header:structural protein
Chain: M: PDB Molecule:phosphatase and actin regulator 1;
PDBTitle: structure of the phactr1 rpel-n domain bound to g-actin
14c4b1uM_
67.7 73
PDB header:structural protein
Chain: M: PDB Molecule:phosphatase and actin regulator 1;
PDBTitle: structure of the phactr1 rpel domain and rpel motif directed2 assemblies with g-actin reveal the molecular basis for actin binding3 cooperativity.
15c4lwsB_
67.2 14
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
16c2kg7B_
64.7 10
PDB header:unknown function
Chain: B: PDB Molecule:esat-6-like protein esxh;
PDBTitle: structure and features of the complex formed by the tuberculosis2 virulence factors rv0287 and rv0288
17d1g4us1
54.0 11
Fold:Four-helical up-and-down bundle
Superfamily:Bacterial GAP domain
Family:Bacterial GAP domain
18d1wa8b1
49.5 5
Fold:Ferritin-like
Superfamily:EsxAB dimer-like
Family:ESAT-6 like
19c4wj2A_
46.7 11
PDB header:unknown function
Chain: A: PDB Molecule:antigen mtb48;
PDBTitle: mycobacterial protein
20c6b7nC_
45.0 10
PDB header:viral protein
Chain: C: PDB Molecule:spike protein;
PDBTitle: cryo-electron microscopy structure of porcine delta coronavirus spike2 protein in the pre-fusion state
21c4xy3A_
not modelled 40.1 13
PDB header:protein transport
Chain: A: PDB Molecule:esx-1 secretion-associated protein espb;
PDBTitle: structure of esx-1 secreted protein espb
22c3mhsE_
not modelled 20.7 15
PDB header:hydrolase/transcription regulator/protei
Chain: E: PDB Molecule:saga-associated factor 73;
PDBTitle: structure of the saga ubp8/sgf11/sus1/sgf73 dub module bound to2 ubiquitin aldehyde
23c2mn4A_
not modelled 20.4 70
PDB header:de novo protein
Chain: A: PDB Molecule:computational designed protein based on structure template
PDBTitle: nmr solution structure of a computational designed protein based on2 structure template 1cy5
24c1rh1A_
not modelled 19.6 12
PDB header:antibiotic
Chain: A: PDB Molecule:colicin b;
PDBTitle: crystal structure of the cytotoxic bacterial protein2 colicin b at 2.5 a resolution
25c6cv0C_
not modelled 19.2 14
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: cryo-electron microscopy structure of infectious bronchitis2 coronavirus spike protein
26c6nzkB_
not modelled 19.2 15
PDB header:viral protein
Chain: B: PDB Molecule:spike surface glycoprotein;
PDBTitle: structural basis for human coronavirus attachment to sialic acid2 receptors
27c4i0xA_
not modelled 16.9 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:esat-6-like protein mab_3112;
PDBTitle: crystal structure of the mycobacterum abscessus esxef (mab_3112-2 mab_3113) complex
28c2vxzA_
not modelled 16.5 7
PDB header:viral protein
Chain: A: PDB Molecule:pyrsv_gp04;
PDBTitle: crystal structure of hypothetical protein pyrsv_gp04 from pyrobaculum2 spherical virus
29c2lo3A_
not modelled 14.4 15
PDB header:transcription
Chain: A: PDB Molecule:saga-associated factor 73;
PDBTitle: solution structure of sgf73(59-102) zinc finger domain
30c1qu7A_
not modelled 12.9 6
PDB header:signaling protein
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein i;
PDBTitle: four helical-bundle structure of the cytoplasmic domain of a serine2 chemotaxis receptor
31c2zp2B_
not modelled 12.6 13
PDB header:transferase inhibitor
Chain: B: PDB Molecule:kinase a inhibitor;
PDBTitle: c-terminal domain of kipi from bacillus subtilis
32c3jclC_
not modelled 12.5 13
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: cryo-electron microscopy structure of a coronavirus spike glycoprotein2 trimer
33c5x5bB_
not modelled 12.2 15
PDB header:viral protein
Chain: B: PDB Molecule:spike glycoprotein;
PDBTitle: prefusion structure of sars-cov spike glycoprotein, conformation 2
34c3g67A_
not modelled 11.9 5
PDB header:signaling protein
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein;
PDBTitle: crystal structure of a soluble chemoreceptor from thermotoga2 maritima
35c5x5fC_
not modelled 11.6 10
PDB header:viral protein
Chain: C: PDB Molecule:s protein;
PDBTitle: prefusion structure of mers-cov spike glycoprotein, conformation 2
36c5i08A_
not modelled 10.9 15
PDB header:viral protein
Chain: A: PDB Molecule:spike glycoprotein, envelope glycoprotein chimera;
PDBTitle: prefusion structure of a human coronavirus spike protein
37c5xlrC_
not modelled 10.7 15
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: structure of sars-cov spike glycoprotein
38c1ei3E_
not modelled 10.3 5
PDB header:blood clotting
Chain: E: PDB Molecule:fibrinogen;
PDBTitle: crystal structure of native chicken fibrinogen
39c5o9eB_
not modelled 10.3 41
PDB header:ribosome
Chain: B: PDB Molecule:putative u3 small nucleolar ribonucleoprotein protein;
PDBTitle: crystal structure of the imp4-mpp10 complex from chaetomium2 thermophilum
40c6nb3B_
not modelled 9.6 10
PDB header:virus
Chain: B: PDB Molecule:spike glycoprotein;
PDBTitle: mers-cov complex with human neutralizing lca60 antibody fab fragment2 (state 1)
41c3ghgK_
not modelled 9.5 8
PDB header:blood clotting
Chain: K: PDB Molecule:fibrinogen beta chain;
PDBTitle: crystal structure of human fibrinogen
42c5szsC_
not modelled 9.1 14
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: glycan shield and epitope masking of a coronavirus spike protein2 observed by cryo-electron microscopy
43c4i0xJ_
not modelled 9.1 9
PDB header:structural genomics, unknown function
Chain: J: PDB Molecule:esat-6-like protein mab_3113;
PDBTitle: crystal structure of the mycobacterum abscessus esxef (mab_3112-2 mab_3113) complex
44d2gqba1
not modelled 9.1 17
Fold:RPA2825-like
Superfamily:RPA2825-like
Family:RPA2825-like
45c5wrgB_
not modelled 8.5 15
PDB header:virus like particle
Chain: B: PDB Molecule:spike glycoprotein;
PDBTitle: sars-cov spike glycoprotein
46d1he1a_
not modelled 8.5 9
Fold:Four-helical up-and-down bundle
Superfamily:Bacterial GAP domain
Family:Bacterial GAP domain
47c6n1fD_
not modelled 8.2 22
PDB header:oxidoreductase
Chain: D: PDB Molecule:oxidoreductase, 2og-fe(ii) oxygenase family;
PDBTitle: crystal structure of oxidoreductase, 2og-fe(ii) oxygenase family, from2 burkholderia pseudomallei
48c2ieqC_
not modelled 8.1 14
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: core structure of s2 from the human coronavirus nl63 spike2 glycoprotein
49c3qflA_
not modelled 8.0 13
PDB header:protein binding
Chain: A: PDB Molecule:mla10;
PDBTitle: coiled-coil domain-dependent homodimerization of intracellular mla2 immune receptors defines a minimal functional module for triggering3 cell death
50c6akmA_
not modelled 8.0 13
PDB header:protein binding
Chain: A: PDB Molecule:suppressor of ikbke 1;
PDBTitle: crystal structure of slmap-sike1 complex
51c2jv4A_
not modelled 7.9 45
PDB header:isomerase
Chain: A: PDB Molecule:peptidyl-prolyl cis/trans isomerase;
PDBTitle: structure characterisation of pina ww domain and comparison2 with other group iv ww domains, pin1 and ess1
52c6cs2A_
not modelled 7.4 15
PDB header:viral protein/hydrolase
Chain: A: PDB Molecule:spike glycoprotein,fibritin;
PDBTitle: sars spike glycoprotein - human ace2 complex, stabilized variant, all2 ace2-bound particles
53c6dmaD_
not modelled 6.8 19
PDB header:de novo protein
Chain: D: PDB Molecule:dhd15_closed_b;
PDBTitle: dhd15_closed
54c3lnrA_
not modelled 6.8 16
PDB header:signaling protein
Chain: A: PDB Molecule:aerotaxis transducer aer2;
PDBTitle: crystal structure of poly-hamp domains from the p. aeruginosa soluble2 receptor aer2
55c4e40A_
not modelled 6.7 12
PDB header:transport protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: the haptoglobin-hemoglobin receptor of trypanosoma congolense
56d1khia2
not modelled 6.6 19
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
57c4ut1A_
not modelled 6.4 17
PDB header:motor protein
Chain: A: PDB Molecule:flagellar hook-associated protein;
PDBTitle: the structure of the flagellar hook junction protein flgk2 from burkholderia pseudomallei
58c1sfcD_
not modelled 6.3 9
PDB header:transport protein
Chain: D: PDB Molecule:protein (snap-25b);
PDBTitle: neuronal synaptic fusion complex
59c1deqO_
not modelled 6.3 6
PDB header:blood clotting
Chain: O: PDB Molecule:fibrinogen (beta chain);
PDBTitle: the crystal structure of modified bovine fibrinogen (at ~42 angstrom resolution)
60c2d4yA_
not modelled 6.1 12
PDB header:structural protein
Chain: A: PDB Molecule:flagellar hook-associated protein 1;
PDBTitle: crystal structure of a 49k fragment of hap1 (flgk)
61c3ivrA_
not modelled 6.1 21
PDB header:ligase
Chain: A: PDB Molecule:putative long-chain-fatty-acid coa ligase;
PDBTitle: crystal structure of putative long-chain-fatty-acid coa ligase from2 rhodopseudomonas palustris cga009
62d1owaa_
not modelled 6.1 7
Fold:Spectrin repeat-like
Superfamily:Spectrin repeat
Family:Spectrin repeat
63c3gw6F_
not modelled 6.0 14
PDB header:chaperone
Chain: F: PDB Molecule:endo-n-acetylneuraminidase;
PDBTitle: intramolecular chaperone
64d1fx7a3
not modelled 6.0 35
Fold:SH3-like barrel
Superfamily:C-terminal domain of transcriptional repressors
Family:FeoA-like
65c1ei3C_
not modelled 6.0 9
PDB header:blood clotting
Chain: C: PDB Molecule:fibrinogen;
PDBTitle: crystal structure of native chicken fibrinogen
66c6ozvA_
not modelled 5.9 13
PDB header:biosynthetic protein
Chain: A: PDB Molecule:txo1;
PDBTitle: the structure of condensation and adenylation domains of teixobactin-2 producing nonribosomal peptide synthetase txo1 serine module in3 complex with amp
67c2i56A_
not modelled 5.8 15
PDB header:isomerase, metal-binding protein
Chain: A: PDB Molecule:l-rhamnose isomerase;
PDBTitle: crystal structure of l-rhamnose isomerase from pseudomonas2 stutzeri with l-rhamnose
68c2choA_
not modelled 5.7 13
PDB header:hydrolase
Chain: A: PDB Molecule:glucosaminidase;
PDBTitle: bacteroides thetaiotaomicron hexosaminidase with o-2 glcnacase activity
69c4nl6C_
not modelled 5.7 15
PDB header:splicing
Chain: C: PDB Molecule:survival motor neuron protein;
PDBTitle: structure of the full-length form of the protein smn found in healthy2 patients
70d1z6ra1
not modelled 5.6 17
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ROK associated domain
71d2p0va1
not modelled 5.5 20
Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:CPF0428-like
72c2p0vA_
not modelled 5.5 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein bt3781;
PDBTitle: crystal structure of bt3781 protein from bacteroides thetaiotaomicron,2 northeast structural genomics target btr58
73c2l0gA_
not modelled 5.4 33
PDB header:protein binding
Chain: A: PDB Molecule:dna polymerase iota;
PDBTitle: solution nmr structure of ubiquitin-binding motif (ubm2) of human2 polymerase iota
74d1lm5a_
not modelled 5.3 9
Fold:beta-hairpin-alpha-hairpin repeat
Superfamily:Plakin repeat
Family:Plakin repeat
75d1szia_
not modelled 5.3 13
Fold:Four-helical up-and-down bundle
Superfamily:Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain
Family:Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain
76c2k4vA_
not modelled 5.1 38
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein pa1076;
PDBTitle: solution structure of uncharacterized protein pa1076 from pseudomonas2 aeruginosa. northeast structural genomics consortium (nesg) target3 pat3, ontario center for structural proteomics target pa1076 .
77c4qmdB_
not modelled 5.1 9
PDB header:cell adhesion
Chain: B: PDB Molecule:envoplakin;
PDBTitle: crystal structure of human envoplakin plakin repeat domain
78c2n03A_
not modelled 5.0 15
PDB header:structural protein
Chain: A: PDB Molecule:plectin;
PDBTitle: solution nmr structure plectin repeat domain 6 (4403-4606) of plectin2 from homo sapiens, northeast structural genomics consortium (nesg)3 target hr6354e

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