Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3908_(-)_4393627_4394373
DateSat Aug 10 22:05:09 BST 2019
Unique Job ID8a2b74ba606dde4c
SequenceVSDGEQAKSR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:48.008 Y:59.091 Z:62.390
Model (left) based on template c3fjyB_
Top template information
PDB header:hydrolase
Chain: B: PDB Molecule:probable mutt1 protein;
PDBTitle: crystal structure of a probable mutt1 protein from bifidobacterium2 adolescentis
Confidence and coverage
Confidence: 99.9% Coverage: 70%
173 residues ( 70% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
238 residues ( 96%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3fjyB_
99.9 21
PDB header:hydrolase
Chain: B: PDB Molecule:probable mutt1 protein;
PDBTitle: crystal structure of a probable mutt1 protein from bifidobacterium2 adolescentis
2c5gg7A_
99.9 32
PDB header:hydrolase
Chain: A: PDB Molecule:hydrolase, nudix family protein;
PDBTitle: crystal structure of mycobacterium smegmatis mutt1 in complex with 8-2 oxo-dgtp, 8-oxo-dgmp and pyrophosphate (i)
3c2gb5B_
99.9 19
PDB header:hydrolase
Chain: B: PDB Molecule:nadh pyrophosphatase;
PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution
4c2pq1B_
99.9 42
PDB header:hydrolase
Chain: B: PDB Molecule:ap4a hydrolase;
PDBTitle: crystal structure of ap4a hydrolase complexed with amp and2 atp (aq_158) from aquifex aeolicus vf5
5d1ktga_
99.9 20
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
6c6o3pA_
99.9 19
PDB header:hydrolase
Chain: A: PDB Molecule:peroxisomal nadh pyrophosphatase nudt12;
PDBTitle: crystal structure of the catalytic domain of mouse nudt12 in complex2 with amp and 3 mg2+ ions
7c4ilqA_
99.9 27
PDB header:hydrolase
Chain: A: PDB Molecule:ct771;
PDBTitle: 2.60a resolution structure of ct771 from chlamydia trachomatis
8d1xsba_
99.9 21
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
9d2fb1a2
99.9 20
Fold:Nudix
Superfamily:Nudix
Family:BT0354 N-terminal domain-like
10c2fb1A_
99.9 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein;
PDBTitle: crystal structure of protein bt0354 from bacteroides thetaiotaomicron
11c3gz8C_
99.9 21
PDB header:dna binding protein
Chain: C: PDB Molecule:mutt/nudix family protein;
PDBTitle: cocrystal structure of nudix domain of shewanella oneidensis nrtr2 complexed with adp ribose
12c3gz6A_
99.9 19
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:mutt/nudix family protein;
PDBTitle: crystal structure of shewanella oneidensis nrtr complexed with a 27mer2 dna
13c3cngC_
99.9 18
PDB header:hydrolase
Chain: C: PDB Molecule:nudix hydrolase;
PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea
14c3exqA_
99.9 28
PDB header:hydrolase
Chain: A: PDB Molecule:nudix family hydrolase;
PDBTitle: crystal structure of a nudix family hydrolase from2 lactobacillus brevis
15c5gp0F_
99.9 22
PDB header:hydrolase
Chain: F: PDB Molecule:nudix hydrolase 1;
PDBTitle: crystal structure of geraniol-nudx1 complex
16d1vcda1
99.9 37
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
17c3i9xA_
99.9 21
PDB header:hydrolase
Chain: A: PDB Molecule:mutt/nudix family protein;
PDBTitle: crystal structure of a mutt/nudix family protein from listeria innocua
18c3h95A_
99.9 21
PDB header:gene regulation
Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 6;
PDBTitle: crystal structure of the nudix domain of nudt6
19c4kyxA_
99.9 24
PDB header:hydrolase
Chain: A: PDB Molecule:adp-ribose pyrophosphatase mutt;
PDBTitle: crystal structure of adp-ribose pyrophosphatase mutt from rickettsia2 felis
20d2fmla2
99.9 24
Fold:Nudix
Superfamily:Nudix
Family:BT0354 N-terminal domain-like
21c2kdvA_
not modelled 99.9 22
PDB header:hydrolase
Chain: A: PDB Molecule:rna pyrophosphohydrolase;
PDBTitle: solution structure of rna pyrophosphohydrolase rpph from2 escherichia coli
22c3sonB_
not modelled 99.9 18
PDB header:hydrolase
Chain: B: PDB Molecule:hypothetical nudix hydrolase;
PDBTitle: crystal structure of a putativel nudix hydrolase (lmof2365_2679) from2 listeria monocytogenes str. 4b f2365 at 1.70 a resolution
23c4dywA_
not modelled 99.9 27
PDB header:hydrolase
Chain: A: PDB Molecule:mutt/nudix family protein;
PDBTitle: crystal structure of mutt nudix hydrolase from burkholderia2 pseudomallei
24c4zbpC_
not modelled 99.9 23
PDB header:hydrolase
Chain: C: PDB Molecule:nudix hydrolase 7;
PDBTitle: crystal structure of the ampcpr-bound atnudt7
25c2qjoB_
not modelled 99.9 22
PDB header:transferase, hydrolase
Chain: B: PDB Molecule:bifunctional nmn adenylyltransferase/nudix hydrolase;
PDBTitle: crystal structure of a bifunctional nmn adenylyltransferase/adp ribose2 pyrophosphatase (nadm) complexed with adprp and nad from3 synechocystis sp.
26c5bonC_
not modelled 99.9 23
PDB header:hydrolase
Chain: C: PDB Molecule:probable 8-oxo-dgtp diphosphatase nudt15;
PDBTitle: crystal structure of human nudt15 (mth2)
27d2azwa1
not modelled 99.8 25
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
28d1sjya_
not modelled 99.8 24
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
29d2b0va1
not modelled 99.8 19
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
30c2r5wA_
not modelled 99.8 20
PDB header:hydrolase, transferase
Chain: A: PDB Molecule:nicotinamide-nucleotide adenylyltransferase;
PDBTitle: crystal structure of a bifunctional nmn2 adenylyltransferase/adp ribose pyrophosphatase from3 francisella tularensis
31c2fmlB_
not modelled 99.8 24
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:mutt/nudix family protein;
PDBTitle: crystal structure of mutt/nudix family protein from enterococcus2 faecalis
32d1ryaa_
not modelled 99.8 22
Fold:Nudix
Superfamily:Nudix
Family:GDP-mannose mannosyl hydrolase NudD
33d1irya_
not modelled 99.8 22
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
34d1vk6a2
not modelled 99.8 23
Fold:Nudix
Superfamily:Nudix
Family:NADH pyrophosphatase
35c3fcmA_
not modelled 99.8 15
PDB header:hydrolase
Chain: A: PDB Molecule:hydrolase, nudix family;
PDBTitle: crystal structure of a nudix hydrolase from clostridium perfringens
36c3q4iA_
not modelled 99.8 20
PDB header:hydrolase
Chain: A: PDB Molecule:phosphohydrolase (mutt/nudix family protein);
PDBTitle: crystal structure of cdp-chase in complex with gd3+
37c3fk9B_
not modelled 99.8 20
PDB header:hydrolase
Chain: B: PDB Molecule:mutator mutt protein;
PDBTitle: crystal structure of mmutator mutt protein from bacillus halodurans
38c5cfiC_
not modelled 99.8 22
PDB header:hydrolase
Chain: C: PDB Molecule:bis(5'-nucleosyl)-tetraphosphatase (diadenosine
PDBTitle: structural and functional attributes of malaria parasite ap4a2 hydrolase
39c4hfqB_
not modelled 99.8 21
PDB header:hydrolase
Chain: B: PDB Molecule:mutt/nudix family protein;
PDBTitle: crystal structure of udp-x diphosphatase
40c3dkuB_
not modelled 99.8 19
PDB header:hydrolase
Chain: B: PDB Molecule:putative phosphohydrolase;
PDBTitle: crystal structure of nudix hydrolase orf153, ymfb, from escherichia2 coli k-1
41d1k2ea_
not modelled 99.8 17
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
42c2rrkA_
not modelled 99.8 19
PDB header:hydrolase
Chain: A: PDB Molecule:ctp pyrophosphohydrolase;
PDBTitle: solution structure of the e. coli orf135 protein
43c3gg6A_
not modelled 99.8 24
PDB header:hydrolase
Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 18;
PDBTitle: crystal structure of the nudix domain of human nudt18
44c2yyhC_
not modelled 99.8 22
PDB header:hydrolase
Chain: C: PDB Molecule:8-oxo-dgtpase domain;
PDBTitle: crystal structure of nudix family protein from aquifex aeolicus
45c2o1cB_
not modelled 99.8 22
PDB header:hydrolase
Chain: B: PDB Molecule:datp pyrophosphohydrolase;
PDBTitle: structure of the e. coli dihydroneopterin triphosphate2 pyrophosphohydrolase
46c3f6aA_
not modelled 99.8 20
PDB header:hydrolase
Chain: A: PDB Molecule:hydrolase, nudix family;
PDBTitle: crystal structure of a hydrolase, nudix family from2 clostridium perfringens
47d2b06a1
not modelled 99.8 28
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
48c3r03B_
not modelled 99.8 23
PDB header:hydrolase
Chain: B: PDB Molecule:nudix hydrolase;
PDBTitle: the crystal structure of nudix hydrolase from rhodospirillum rubrum
49c2pqvA_
not modelled 99.8 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:mutt/nudix family protein;
PDBTitle: crystal structure of mutt/nudix family protein from streptococcus2 pneumoniae
50c2fvvA_
not modelled 99.8 22
PDB header:hydrolase
Chain: A: PDB Molecule:diphosphoinositol polyphosphate phosphohydrolase 1;
PDBTitle: human diphosphoinositol polyphosphate phosphohydrolase 1
51d2fvva1
not modelled 99.8 22
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
52c4v14A_
not modelled 99.8 22
PDB header:hydrolase
Chain: A: PDB Molecule:mutator mutt protein;
PDBTitle: structure and function analysis of mutt from the2 psychrofile fish pathogen aliivibrio salmonicida and the3 mesophile vibrio cholerae
53d1jkna_
not modelled 99.8 22
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
54d1nqza_
not modelled 99.8 25
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
55c3gwyA_
not modelled 99.8 24
PDB header:hydrolase
Chain: A: PDB Molecule:putative ctp pyrophosphohydrolase;
PDBTitle: crystal structure of putative ctp pyrophosphohydrolase from2 bacteroides fragilis
56c3hhjA_
not modelled 99.8 21
PDB header:hydrolase
Chain: A: PDB Molecule:mutator mutt protein;
PDBTitle: crystal structure of mutator mutt from bartonella henselae
57d1puna_
not modelled 99.8 24
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
58c3o8sA_
not modelled 99.8 21
PDB header:hydrolase
Chain: A: PDB Molecule:adp-ribose pyrophosphatase;
PDBTitle: crystal structure of an adp-ribose pyrophosphatase (ssu98_1448) from2 streptococcus suis 89-1591 at 2.27 a resolution
59c5mp0D_
not modelled 99.8 19
PDB header:hydrolase
Chain: D: PDB Molecule:m7gpppn-mrna hydrolase;
PDBTitle: human m7gpppn-mrna hydrolase (dcp2, nudt20) catalytic domain
60c5lf8A_
not modelled 99.8 20
PDB header:hydrolase
Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 17;
PDBTitle: human nucleoside diphosphate-linked moiety x motif 17 (nudt17)
61c5zrhA_
not modelled 99.8 18
PDB header:hydrolase
Chain: A: PDB Molecule:putative mutator protein mutt2/nudix hydrolase;
PDBTitle: m. smegmatis antimutator protein mutt2 in complex with cmp
62c3grnB_
not modelled 99.8 22
PDB header:hydrolase
Chain: B: PDB Molecule:mutt related protein;
PDBTitle: crystal structure of mutt protein from methanosarcina mazei go1
63c3ef5A_
not modelled 99.8 21
PDB header:hydrolase
Chain: A: PDB Molecule:probable pyrophosphohydrolase;
PDBTitle: structure of the rna pyrophosphohydrolase bdrpph in complex with dgtp
64c5x1xA_
not modelled 99.8 19
PDB header:hydrolase
Chain: A: PDB Molecule:mutator mutt protein;
PDBTitle: solution nmr structure of dna mismatch repair protein mutt (family2 nudix hydrolase) from methicillin resistant staphylococcus aureus 252
65c5lopA_
not modelled 99.8 19
PDB header:rna binding protein
Chain: A: PDB Molecule:klla0f23980p;
PDBTitle: structure of the active form of /k. lactis/ dcp1-dcp2-edc3 decapping2 complex bound to m7gdp
66c2jvbA_
not modelled 99.8 16
PDB header:hydrolase
Chain: A: PDB Molecule:mrna-decapping enzyme subunit 2;
PDBTitle: solution structure of catalytic domain of ydcp2
67c2qkmF_
not modelled 99.8 28
PDB header:hydrolase
Chain: F: PDB Molecule:spac19a8.12 protein;
PDBTitle: the crystal structure of fission yeast mrna decapping enzyme dcp1-dcp22 complex
68c5c7tB_
not modelled 99.8 20
PDB header:hydrolase
Chain: B: PDB Molecule:nudf protein;
PDBTitle: crystal structure of the bdellovibrio bacteriovorus nucleoside2 diphosphate sugar hydrolase in complex with adp-ribose
69d2a6ta2
not modelled 99.8 24
Fold:Nudix
Superfamily:Nudix
Family:mRNA decapping enzyme-like
70c3n77B_
not modelled 99.8 18
PDB header:hydrolase
Chain: B: PDB Molecule:nucleoside triphosphatase nudi;
PDBTitle: crystal structure of idp01880, putative ntp pyrophosphohydrolase of2 salmonella typhimurium lt2
71d1ppva_
not modelled 99.8 18
Fold:Nudix
Superfamily:Nudix
Family:IPP isomerase-like
72c3edsA_
not modelled 99.7 27
PDB header:hydrolase
Chain: A: PDB Molecule:mutt/nudix family protein;
PDBTitle: crystal structure of a mut/nudix family protein from bacillus2 thuringiensis
73d1vhza_
not modelled 99.7 18
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
74c3id9B_
not modelled 99.7 22
PDB header:hydrolase
Chain: B: PDB Molecule:mutt/nudix family protein;
PDBTitle: crystal structure of a mutt/nudix family protein from2 bacillus thuringiensis
75d1q33a_
not modelled 99.7 20
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
76c3bm4B_
not modelled 99.7 24
PDB header:hydrolase
Chain: B: PDB Molecule:adp-sugar pyrophosphatase;
PDBTitle: crystal structure of human adp-ribose pyrophosphatase nudt5 in complex2 with magnesium and ampcpr
77c4jztA_
not modelled 99.7 24
PDB header:hydrolase
Chain: A: PDB Molecule:dgtp pyrophosphohydrolase;
PDBTitle: crystal structure of the bacillus subtilis pyrophosphohydrolase bsrpph2 (e68a mutant) bound to gtp
78c2w4eA_
not modelled 99.7 19
PDB header:hydrolase
Chain: A: PDB Molecule:mutt/nudix family protein;
PDBTitle: structure of an n-terminally truncated nudix hydrolase2 dr2204 from deinococcus radiodurans
79c2yvoA_
not modelled 99.7 21
PDB header:hydrolase
Chain: A: PDB Molecule:mutt/nudix family protein;
PDBTitle: crystal structure of ndx2 in complex with mg2+ and amp from thermus2 thermophilus hb8
80d2o5fa1
not modelled 99.7 18
Fold:Nudix
Superfamily:Nudix
Family:IPP isomerase-like
81d2fkba1
not modelled 99.7 22
Fold:Nudix
Superfamily:Nudix
Family:IPP isomerase-like
82d1hzta_
not modelled 99.7 19
Fold:Nudix
Superfamily:Nudix
Family:IPP isomerase-like
83c3f13A_
not modelled 99.7 27
PDB header:hydrolase
Chain: A: PDB Molecule:putative nudix hydrolase family member;
PDBTitle: crystal structure of putative nudix hydrolase family member from2 chromobacterium violaceum
84d1mqea_
not modelled 99.7 27
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
85d1g0sa_
not modelled 99.7 22
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
86c3rh7A_
not modelled 99.7 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:hypothetical oxidoreductase;
PDBTitle: crystal structure of a putative oxidoreductase (sma0793) from2 sinorhizobium meliloti 1021 at 3.00 a resolution
87d1v8ya_
not modelled 99.7 24
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
88c5t3pB_
not modelled 99.6 17
PDB header:hydrolase
Chain: B: PDB Molecule:peroxisomal coenzyme a diphosphatase nudt7;
PDBTitle: crystal structure of human peroxisomal coenzyme a diphosphatase nudt7
89c4v1aj_
not modelled 99.6 20
PDB header:ribosome
Chain: J: PDB Molecule:
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 22 of 2
90c3e57A_
not modelled 99.5 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein tm1382;
PDBTitle: crystal structure of tm1382, a putative nudix hydrolase
91d1u20a1
not modelled 99.5 19
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
92c3q91D_
not modelled 99.5 17
PDB header:hydrolase
Chain: D: PDB Molecule:uridine diphosphate glucose pyrophosphatase;
PDBTitle: crystal structure of human uridine diphosphate glucose pyrophosphatase2 (nudt14)
93d1viua_
not modelled 99.5 20
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
94c1rrqA_
not modelled 99.5 13
PDB header:hydrolase/dna
Chain: A: PDB Molecule:muty;
PDBTitle: muty adenine glycosylase in complex with dna containing an2 a:oxog pair
95d1x51a1
not modelled 99.5 12
Fold:Nudix
Superfamily:Nudix
Family:MutY C-terminal domain-like
96d1rrqa2
not modelled 99.4 13
Fold:Nudix
Superfamily:Nudix
Family:MutY C-terminal domain-like
97c3qsjA_
not modelled 99.4 21
PDB header:hydrolase
Chain: A: PDB Molecule:nudix hydrolase;
PDBTitle: crystal structure of nudix hydrolase from alicyclobacillus2 acidocaldarius
98c2i6kA_
not modelled 99.4 21
PDB header:isomerase
Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 1;
PDBTitle: crystal structure of human type i ipp isomerase complexed with a2 substrate analog
99c3dupB_
not modelled 99.3 17
PDB header:hydrolase
Chain: B: PDB Molecule:mutt/nudix family protein;
PDBTitle: crystal structure of mutt/nudix family hydrolase from rhodospirillum2 rubrum atcc 11170
100c2j8qB_
not modelled 99.3 17
PDB header:nuclear protein
Chain: B: PDB Molecule:cleavage and polyadenylation specificity factor 5;
PDBTitle: crystal structure of human cleavage and polyadenylation2 specificity factor 5 (cpsf5) in complex with a sulphate3 ion.
101c2pnyA_
not modelled 99.3 14
PDB header:isomerase
Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 2;
PDBTitle: structure of human isopentenyl-diphosphate delta-isomerase 2
102c5lf9A_
not modelled 99.0 14
PDB header:transferase
Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 22;
PDBTitle: crystal structure of human nudt22
103c3couA_
not modelled 98.3 28
PDB header:hydrolase
Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 16;
PDBTitle: crystal structure of human nudix motif 16 (nudt16)
104c1vw46_
not modelled 98.1 20
PDB header:ribosome
Chain: 6: PDB Molecule:54s ribosomal protein l17, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
105c3kvhA_
not modelled 97.4 18
PDB header:rna binding protein
Chain: A: PDB Molecule:protein syndesmos;
PDBTitle: crystal structure of human protein syndesmos (nudt16-like protein)
106c4ktbA_
not modelled 97.1 16
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: the crystal structure of posible asymmetric diadenosine tetraphosphate2 (ap(4)a) hydrolases from jonesia denitrificans dsm 20603
107c6drkD_
not modelled 95.6 13
PDB header:transport protein
Chain: D: PDB Molecule:transient receptor potential cation channel, subfamily m,
PDBTitle: structure of trpm2 ion channel receptor by single particle electron2 cryo-microscopy, apo state
108c3p5tE_
not modelled 95.1 18
PDB header:rna binding protein
Chain: E: PDB Molecule:cleavage and polyadenylation specificity factor subunit 5;
PDBTitle: cfim25-cfim68 complex
109c6mizC_
not modelled 92.7 21
PDB header:membrane protein
Chain: C: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: human trpm2 ion channel in an adpr-bound state
110c6d73B_
not modelled 62.0 12
PDB header:transport protein
Chain: B: PDB Molecule:transient receptor potential cation channel, subfamily m;
PDBTitle: cryo-em structure of the zebrafish trpm2 channel in the presence of2 ca2+
111c2ii8F_
not modelled 29.6 42
PDB header:signaling protein
Chain: F: PDB Molecule:anabaena sensory rhodopsin transducer protein;
PDBTitle: anabaena sensory rhodopsin transducer
112d1nc7a_
not modelled 27.9 33
Fold:Hypothetical protein TM1070
Superfamily:Hypothetical protein TM1070
Family:Hypothetical protein TM1070

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