Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3909_(-)_4394370_4396778
DateSat Aug 10 22:05:09 BST 2019
Unique Job IDe2554d66aea504b7
SequenceVTALQLGWAA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:28.916 Y:53.303 Z:25.588
Model (left) based on template c4fxkB_
Top template information
PDB header:immune system
Chain: B: PDB Molecule:complement c4-a alpha chain;
PDBTitle: human complement c4
Confidence and coverage
Confidence: 97.1% Coverage: 11%
87 residues ( 11% of your sequence) have been modelled with 97.1% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
215 residues ( 27%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4fxkB_
97.1 20
PDB header:immune system
Chain: B: PDB Molecule:complement c4-a alpha chain;
PDBTitle: human complement c4
2d1w8oa1
96.9 28
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
3c3u48A_
96.8 19
PDB header:hydrolase
Chain: A: PDB Molecule:jmb19063;
PDBTitle: from soil to structure: a novel dimeric family 3-beta-glucosidase2 isolated from compost using metagenomic analysis
4c5wvpA_
96.8 22
PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucosidase;
PDBTitle: expression, characterization and crystal structure of a novel beta-2 glucosidase from paenibacillus barengoltzii
5c2l0dA_
96.6 20
PDB header:cell adhesion
Chain: A: PDB Molecule:cell surface protein;
PDBTitle: solution nmr structure of putative cell surface protein ma_4588 (272-2 376 domain) from methanosarcina acetivorans, northeast structural3 genomics consortium target mvr254a
6c3hs0B_
96.5 17
PDB header:immune system
Chain: B: PDB Molecule:cobra venom factor;
PDBTitle: cobra venom factor (cvf) in complex with human factor b
7c2x41A_
96.4 20
PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucosidase;
PDBTitle: structure of beta-glucosidase 3b from thermotoga neapolitana in2 complex with glucose
8c5nbsA_
96.3 18
PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucosidase;
PDBTitle: structural studies of a glycoside hydrolase family 3 beta-glucosidase2 from the model fungus neurospora crassa
9c4i3gB_
96.3 18
PDB header:hydrolase
Chain: B: PDB Molecule:beta-glucosidase;
PDBTitle: crystal structure of desr, a beta-glucosidase from streptomyces2 venezuelae in complex with d-glucose.
10c3zz1A_
96.3 22
PDB header:hydrolase
Chain: A: PDB Molecule:beta-d-glucoside glucohydrolase;
PDBTitle: crystal structure of a glycoside hydrolase family 3 beta-glucosidase,2 bgl1 from hypocrea jecorina at 2.1a resolution.
11c5k6lA_
96.2 25
PDB header:hydrolase
Chain: A: PDB Molecule:b-glucosidase;
PDBTitle: structure of a gh3 b-glucosidase from cow rumen metagenome
12c5tf0B_
96.1 25
PDB header:hydrolase
Chain: B: PDB Molecule:glycosyl hydrolase family 3 n-terminal domain protein;
PDBTitle: crystal structure of glycosil hydrolase family 3 n-terminal domain2 protein from bacteroides intestinalis
13c5jp0A_
96.1 16
PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucosidase bogh3b;
PDBTitle: bacteroides ovatus xyloglucan pul gh3b with bound glucose
14c4d0jD_
96.1 21
PDB header:hydrolase
Chain: D: PDB Molecule:beta-glucosidase;
PDBTitle: crystal structure of glycoside hydrolase family 3 beta-2 glucosidase cel3a from the moderately thermophilic fungus3 rasamsonia emersonii
15c5z87B_
96.0 20
PDB header:hydrolase
Chain: B: PDB Molecule:emgh1;
PDBTitle: structural of a novel b-glucosidase emgh1 at 2.3 angstrom from2 erythrobacter marinus
16c3ac0B_
96.0 22
PDB header:hydrolase
Chain: B: PDB Molecule:beta-glucosidase i;
PDBTitle: crystal structure of beta-glucosidase from kluyveromyces marxianus in2 complex with glucose
17c4zo9B_
95.9 23
PDB header:hydrolase
Chain: B: PDB Molecule:lin1840 protein;
PDBTitle: crystal structure of mutant (d270a) beta-glucosidase from listeria2 innocua in complex with laminaribiose
18c6q7jB_
95.8 19
PDB header:hydrolase
Chain: B: PDB Molecule:exo-1,4-beta-xylosidase xlnd;
PDBTitle: gh3 exo-beta-xylosidase (xlnd) in complex with xylobiose aziridine2 activity based probe
19c4iidB_
95.7 21
PDB header:hydrolase
Chain: B: PDB Molecule:beta-glucosidase 1;
PDBTitle: crystal structure of beta-glucosidase 1 from aspergillus aculeatus in2 complex with 1-deoxynojirimycin
20c5yotB_
95.7 24
PDB header:hydrolase
Chain: B: PDB Molecule:isoprimeverose-producing enzyme;
PDBTitle: isoprimeverose-producing enzyme from aspergillus oryzae in complex2 with isoprimeverose
21c5z9sB_
not modelled 95.7 19
PDB header:hydrolase
Chain: B: PDB Molecule:glycosyl hydrolase family 3 protein;
PDBTitle: functional and structural characterization of a beta-glucosidase2 involved in saponin metabolism from intestinal bacteria
22c5a7mA_
not modelled 95.6 19
PDB header:hydrolase
Chain: A: PDB Molecule:beta-xylosidase;
PDBTitle: the structure of hypocrea jecorina beta-xylosidase xyl3a (bxl1)
23c5wabD_
not modelled 95.5 22
PDB header:hydrolase
Chain: D: PDB Molecule:putative beta-glucosidase;
PDBTitle: crystal structure of bifidobacterium adolescentis gh3 beta-glucosidase
24c5wabC_
not modelled 95.4 24
PDB header:hydrolase
Chain: C: PDB Molecule:putative beta-glucosidase;
PDBTitle: crystal structure of bifidobacterium adolescentis gh3 beta-glucosidase
25c4a5wA_
not modelled 95.1 14
PDB header:immune system
Chain: A: PDB Molecule:complement c5;
PDBTitle: crystal structure of c5b6
26c2kutA_
not modelled 95.1 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of gmr58a from geobacter metallireducens.2 northeast structural genomics consortium target gmr58a
27c6i2xB_
not modelled 95.0 20
PDB header:immune system
Chain: B: PDB Molecule:cobra venom factor;
PDBTitle: structure of complement c5 in complex with small molecule inhibitor2 and cvf
28c2kl6A_
not modelled 94.1 27
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of the cardb domain of pf1109 from2 pyrococcus furiosus. northeast structural genomics3 consortium target pfr193a
29c2x3bB_
not modelled 93.8 26
PDB header:hydrolase
Chain: B: PDB Molecule:toxic extracellular endopeptidase;
PDBTitle: asap1 inactive mutant e294a, an extracellular toxic zinc2 metalloendopeptidase
30c4acqA_
not modelled 93.7 20
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:alpha-2-macroglobulin;
PDBTitle: alpha-2 macroglobulin
31c3g6jB_
not modelled 93.5 22
PDB header:immune system
Chain: B: PDB Molecule:complement c3 alpha chain;
PDBTitle: c3b in complex with a c3b specific fab
32c1l9mB_
not modelled 93.3 23
PDB header:transferase
Chain: B: PDB Molecule:protein-glutamine glutamyltransferase e3;
PDBTitle: three-dimensional structure of the human transglutaminase 32 enzyme: binding of calcium ions change structure for3 activation
33c2a73B_
not modelled 93.1 20
PDB header:immune system
Chain: B: PDB Molecule:complement c3;
PDBTitle: human complement component c3
34c2a74B_
not modelled 92.6 22
PDB header:immune system
Chain: B: PDB Molecule:complement component c3c;
PDBTitle: human complement component c3c
35c3cu7A_
not modelled 92.5 15
PDB header:immune system
Chain: A: PDB Molecule:complement c5;
PDBTitle: human complement component 5
36c4acqC_
not modelled 91.7 20
PDB header:hydrolase inhibitor
Chain: C: PDB Molecule:alpha-2-macroglobulin;
PDBTitle: alpha-2 macroglobulin
37c3e9tD_
not modelled 91.7 19
PDB header:membrane protein
Chain: D: PDB Molecule:na/ca exchange protein;
PDBTitle: crystal structure of apo-form calx cbd1 domain
38c1yewI_
not modelled 89.9 20
PDB header:oxidoreductase, membrane protein
Chain: I: PDB Molecule:particulate methane monooxygenase, b subunit;
PDBTitle: crystal structure of particulate methane monooxygenase
39c3rgbA_
not modelled 89.9 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:methane monooxygenase subunit b2;
PDBTitle: crystal structure of particulate methane monooxygenase from2 methylococcus capsulatus (bath)
40c2h47C_
not modelled 88.3 14
PDB header:oxidoreductase/electron transport
Chain: C: PDB Molecule:azurin;
PDBTitle: crystal structure of an electron transfer complex between2 aromatic amine dephydrogenase and azurin from alcaligenes3 faecalis (form 1)
41c3isyA_
not modelled 87.4 16
PDB header:protein binding
Chain: A: PDB Molecule:intracellular proteinase inhibitor;
PDBTitle: crystal structure of an intracellular proteinase inhibitor (ipi,2 bsu11130) from bacillus subtilis at 2.61 a resolution
42c3rfrI_
not modelled 87.2 15
PDB header:oxidoreductase
Chain: I: PDB Molecule:pmob;
PDBTitle: crystal structure of particulate methane monooxygenase (pmmo) from2 methylocystis sp. strain m
43d1cc3a_
not modelled 84.6 16
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
44d1exha_
not modelled 84.1 23
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Carbohydrate-binding domain
Family:Cellulose-binding domain family II
45c3pvmB_
not modelled 83.5 17
PDB header:immune system
Chain: B: PDB Molecule:cobra venom factor;
PDBTitle: structure of complement c5 in complex with cvf
46c5icuA_
not modelled 82.5 13
PDB header:chaperone
Chain: A: PDB Molecule:copc;
PDBTitle: the crystal structure of copc from methylosinus trichosporium ob3b
47d2vzsa2
not modelled 82.3 17
Fold:Immunoglobulin-like beta-sandwich
Superfamily:beta-Galactosidase/glucuronidase domain
Family:beta-Galactosidase/glucuronidase domain
48c2b39B_
not modelled 80.6 19
PDB header:immune system
Chain: B: PDB Molecule:c3;
PDBTitle: structure of mammalian c3 with an intact thioester at 3a resolution
49c3h6aB_
not modelled 78.5 17
PDB header:cell adhesion
Chain: B: PDB Molecule:integrin beta-4;
PDBTitle: structure of the calx-beta domain of integrin beta42 crystallized in the presence of calcium
50c2r39A_
not modelled 77.9 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:fixg-related protein;
PDBTitle: crystal structure of fixg-related protein from vibrio parahaemolyticus
51c3ndyG_
not modelled 76.1 16
PDB header:hydrolase
Chain: G: PDB Molecule:endoglucanase d;
PDBTitle: the structure of the catalytic and carbohydrate binding domain of2 endoglucanase d from clostridium cellulovorans
52c4u48A_
not modelled 75.7 15
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:putative inner membrane lipoprotein;
PDBTitle: crystal structure of salmonella alpha-2-macroglobulin
53c4rtdA_
not modelled 75.4 12
PDB header:lipid binding protein
Chain: A: PDB Molecule:uncharacterized lipoprotein yfhm;
PDBTitle: escherichia coli alpha-2-macroglobulin activated by porcine elastase
54c2rttA_
not modelled 73.8 20
PDB header:hydrolase
Chain: A: PDB Molecule:chic;
PDBTitle: solution structure of the chitin-binding domain of chi18ac from2 streptomyces coelicolor
55d2ccwa1
not modelled 73.7 11
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
56d1ex0a3
not modelled 69.7 11
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Transglutaminase, two C-terminal domains
Family:Transglutaminase, two C-terminal domains
57d1jzga_
not modelled 69.6 17
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
58d1nwpa_
not modelled 69.3 15
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
59c6nfqC_
not modelled 69.3 6
PDB header:metal binding protein
Chain: C: PDB Molecule:copc;
PDBTitle: copc from pseudomonas fluorescens
60c3ginB_
not modelled 69.0 13
PDB header:metal binding protein
Chain: B: PDB Molecule:sodium/calcium exchanger 1;
PDBTitle: crystal structure of e454k-cbd1
61c2pn5A_
not modelled 67.8 18
PDB header:immune system
Chain: A: PDB Molecule:thioester-containing protein i;
PDBTitle: crystal structure of tep1r
62d1cuoa_
not modelled 65.0 11
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
63d3es6b1
not modelled 63.1 14
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:SVA-like
64c4oleD_
not modelled 62.9 15
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:next to brca1 gene 1 protein;
PDBTitle: crystal structure of a neighbor of brca1 gene 1 (nbr1) from homo2 sapiens at 2.52 a resolution
65c6f7eA_
not modelled 62.8 17
PDB header:carbohydrate
Chain: A: PDB Molecule:putative secreted cellulose binding protein;
PDBTitle: nmr solution structure of the cellulose-binding family 2 carbohydrate2 binding domain (cbm2) from sclpmo9c
66c2xzzA_
not modelled 59.3 11
PDB header:transferase
Chain: A: PDB Molecule:protein-glutamine gamma-glutamyltransferase k;
PDBTitle: crystal structure of the human transglutaminase 1 beta-barrel domain
67d1joia_
not modelled 59.3 14
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
68c2qvkA_
not modelled 59.2 13
PDB header:metal binding protein
Chain: A: PDB Molecule:sodium/calcium exchanger 1;
PDBTitle: the second ca2+-binding domain of the na+-ca2+ exchanger is2 essential for regulation: crystal structures and3 mutational analysis
69d1rkra_
not modelled 55.2 14
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
70d1g0da3
not modelled 54.7 14
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Transglutaminase, two C-terminal domains
Family:Transglutaminase, two C-terminal domains
71c3ay2A_
not modelled 53.5 17
PDB header:antitumor protein, antiviral protein
Chain: A: PDB Molecule:lipid modified azurin protein;
PDBTitle: crystal structure of neisserial azurin
72c2aanA_
not modelled 53.4 17
PDB header:electron transport
Chain: A: PDB Molecule:auracyanin a;
PDBTitle: auracyanin a: a "blue" copper protein from the green thermophilic2 photosynthetic bacterium,chloroflexus aurantiacus
73d1qhqa_
not modelled 52.2 17
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
74c5z6pB_
not modelled 50.4 7
PDB header:hydrolase
Chain: B: PDB Molecule:b-agarase;
PDBTitle: the crystal structure of an agarase, agwh50c
75d1ix2a_
not modelled 47.2 12
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Copper resistance protein C (CopC, PcoC)
76c6c14A_
not modelled 46.0 10
PDB header:membrane protein, metal transport
Chain: A: PDB Molecule:protocadherin-15;
PDBTitle: cryoem structure of mouse pcdh15-1ec-lhfpl5 complex
77c2kncA_
not modelled 45.4 17
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
78c2e6jA_
not modelled 44.0 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hydin protein;
PDBTitle: solution structure of the c-terminal papd-like domain from2 human hydin protein
79c5sydA_
not modelled 41.8 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:azurin, chimeric construct;
PDBTitle: circularly permutated azurin (cpaz) based on p. aeruginosa azurin2 sequence
80c5e6wA_
not modelled 38.2 21
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin beta-2;
PDBTitle: re-refinement of the crystal structure of the plexin-semaphorin-2 integrin domain/hybrid domain/i-egf1 segment from the human integrin3 b2 subunit
81d1azca_
not modelled 36.5 10
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
82d3pccm_
not modelled 33.9 27
Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
83c4b97A_
not modelled 32.8 19
PDB header:sugar binding protein
Chain: A: PDB Molecule:cellulose binding domain-containing protein;
PDBTitle: biomass sensing modules from putative rsgi-like proteins2 of clostridium thermocellum resemble family 3 carbohydrate-3 binding module of cellulosome
84c2ys4A_
not modelled 32.8 11
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hydrocephalus-inducing protein homolog;
PDBTitle: solution structure of the n-terminal papd-like domain of2 hydin protein from human
85c4ilvB_
not modelled 32.5 26
PDB header:oxidoreductase
Chain: B: PDB Molecule:intradiol ring-cleavage dioxygenase;
PDBTitle: structure of the dioxygenase domain of sacte_2871, a novel dioxygenase2 carbohydrate-binding protein fusion from the cellulolytic bacterium3 streptomyces sp. sirexaa-e
86c3rkoK_
not modelled 27.2 28
PDB header:oxidoreductase
Chain: K: PDB Molecule:nadh-quinone oxidoreductase subunit k;
PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution
87d2bura1
not modelled 27.2 23
Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
88d1k1xa3
not modelled 26.3 21
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:4-alpha-glucanotransferase, N-terminal domain
89c4bq3A_
not modelled 24.8 9
PDB header:hydrolase
Chain: A: PDB Molecule:b-agarase;
PDBTitle: structural analysis of an exo-beta-agarase
90d2burb1
not modelled 23.3 33
Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
91c5v2sA_
not modelled 22.8 19
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein b;
PDBTitle: crystal structure of glycoprotein b from herpes simplex virus type i
92d3pcca_
not modelled 22.8 26
Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
93c6cpdB_
not modelled 22.8 15
PDB header:metal binding protein
Chain: B: PDB Molecule:pmod;
PDBTitle: crystal structure of pmod soluble domain from methylocystis sp. atcc2 49242 (rockwell)
94d2dpka1
not modelled 22.7 13
Fold:Immunoglobulin-like beta-sandwich
Superfamily:CalX-like
Family:CalX-beta domain
95c3us9A_
not modelled 22.4 11
PDB header:metal binding protein
Chain: A: PDB Molecule:sodium/calcium exchanger 1;
PDBTitle: crystal structure of the ncx1 intracellular tandem calcium binding2 domains(cbd12)
96d1vjja3
not modelled 21.5 14
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Transglutaminase, two C-terminal domains
Family:Transglutaminase, two C-terminal domains
97c1f13A_
not modelled 21.2 11
PDB header:coagulation factor
Chain: A: PDB Molecule:cellular coagulation factor xiii zymogen;
PDBTitle: recombinant human cellular coagulation factor xiii
98c6e8wC_
not modelled 20.2 24
PDB header:viral protein
Chain: C: PDB Molecule:envelope glycoprotein gp160;
PDBTitle: mper-tm domain of hiv-1 envelope glycoprotein (env)
99c3rb7E_
not modelled 19.5 14
PDB header:metal binding protein
Chain: E: PDB Molecule:na/ca exchange protein;
PDBTitle: crystal structure of cbd12 from calx1.2

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below