Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3912_(-)_4401047_4401811
DateSat Aug 10 22:05:10 BST 2019
Unique Job ID480229dac7316356
SequenceMSAADKDPDK ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:52.744 Y:36.273 Z:27.693
Model (left) based on template c2z2sD_
Top template information
PDB header:transcription
Chain: D: PDB Molecule:anti-sigma factor chrr, transcriptional activator chrr;
PDBTitle: crystal structure of rhodobacter sphaeroides sige in complex with the2 anti-sigma chrr
Confidence and coverage
Confidence: 99.3% Coverage: 30%
76 residues ( 30% of your sequence) have been modelled with 99.3% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2z2sD_



99.3 16
PDB header:transcription
Chain: D: PDB Molecule:anti-sigma factor chrr, transcriptional activator chrr;
PDBTitle: crystal structure of rhodobacter sphaeroides sige in complex with the2 anti-sigma chrr
2c5wuqD_



99.2 6
PDB header:metal binding protein
Chain: D: PDB Molecule:anti-sigma-w factor rsiw;
PDBTitle: crystal structure of sigw in complex with its anti-sigma rsiw, a zinc2 binding form
3c3hugJ_



99.1 13
PDB header:transcription/membrane protein
Chain: J: PDB Molecule:probable conserved membrane protein;
PDBTitle: crystal structure of mycobacterium tuberculosis anti-sigma factor rsla2 in complex with -35 promoter binding domain of sigl
4c5frhA_



99.1 10
PDB header:transcription
Chain: A: PDB Molecule:anti-sigma factor rsra;
PDBTitle: solution structure of oxidised rsra
5c3vdoB_



98.9 29
PDB header:dna binding protein/protein binding
Chain: B: PDB Molecule:anti-sigma-k factor rska;
PDBTitle: structure of extra-cytoplasmic function(ecf) sigma factor sigk in2 complex with its negative regulator rska from mycobacterium3 tuberculosis
6c6in7A_



98.1 12
PDB header:transcription
Chain: A: PDB Molecule:sigma factor algu negative regulatory protein;
PDBTitle: crystal structure of algu in complex with muca(cyto)
7c1or7C_



95.9 16
PDB header:transcription
Chain: C: PDB Molecule:sigma-e factor negative regulatory protein;
PDBTitle: crystal structure of escherichia coli sigmae with the cytoplasmic2 domain of its anti-sigma rsea
8d1or7c_



95.9 16
Fold:N-terminal, cytoplasmic domain of anti-sigmaE factor RseA
Superfamily:N-terminal, cytoplasmic domain of anti-sigmaE factor RseA
Family:N-terminal, cytoplasmic domain of anti-sigmaE factor RseA
9c5camC_



95.8 15
PDB header:transcription
Chain: C: PDB Molecule:pupr protein;
PDBTitle: crystal structure of the cytoplasmic domain of the pseudomonas putida2 anti-sigma factor pupr (semet)
10c4ynhA_



74.9 26
PDB header:structural protein
Chain: A: PDB Molecule:spindle assembly abnormal protein 5;
PDBTitle: structure of the c. elegans sas-5 implico dimerization domain
11c5m45I_



28.5 20
PDB header:ligase
Chain: I: PDB Molecule:acetone carboxylase gamma subunit;
PDBTitle: structure of acetone carboxylase purified from xanthobacter2 autotrophicus
12c3kb4D_



18.5 20
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:alr8543 protein;
PDBTitle: crystal structure of the alr8543 protein in complex with2 geranylgeranyl monophosphate and magnesium ion from nostoc sp. pcc3 7120, northeast structural genomics consortium target nsr141
13c5oynB_



18.3 22
PDB header:lyase
Chain: B: PDB Molecule:dehydratase, ilvd/edd family;
PDBTitle: crystal structure of d-xylonate dehydratase in holo-form
14c5ze4A_



16.7 19
PDB header:lyase
Chain: A: PDB Molecule:dihydroxy-acid dehydratase, chloroplastic;
PDBTitle: the structure of holo- structure of dhad complex with [2fe-2s] cluster
15c6ovtD_



12.0 22
PDB header:lyase
Chain: D: PDB Molecule:dihydroxy-acid dehydratase;
PDBTitle: crystal structure of ilvd from mycobacterium tuberculosis
16d2f8aa1



11.6 10
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
17c5j84A_



11.4 11
PDB header:lyase
Chain: A: PDB Molecule:dihydroxy-acid dehydratase;
PDBTitle: crystal structure of l-arabinonate dehydratase in holo-form
18d1igqa_



11.0 38
Fold:SH3-like barrel
Superfamily:C-terminal domain of transcriptional repressors
Family:Transcriptional repressor protein KorB
19d1igub_



9.9 38
Fold:SH3-like barrel
Superfamily:C-terminal domain of transcriptional repressors
Family:Transcriptional repressor protein KorB
20c2qsiB_



9.8 15
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative hydrogenase expression/formation protein hupg;
PDBTitle: crystal structure of putative hydrogenase expression/formation protein2 hupg from rhodopseudomonas palustris cga009
21d1v58a1



not modelled 9.7 13
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:DsbC/DsbG C-terminal domain-like
22c5lbmD_



not modelled 9.3 17
PDB header:transcription
Chain: D: PDB Molecule:transcriptional repressor frmr;
PDBTitle: the asymmetric tetrameric structure of the formaldehyde sensing2 transcriptional repressor frmr from escherichia coli
23c3gv1A_



not modelled 9.2 7
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:disulfide interchange protein;
PDBTitle: crystal structure of disulfide interchange protein from neisseria2 gonorrhoeae
24d2cwla1



not modelled 9.1 21
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Manganese catalase (T-catalase)
25d2nrka1



not modelled 8.4 19
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:GrpB-like
26d1j08a1



not modelled 8.2 21
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:PDI-like
27d1z6ma1



not modelled 8.1 9
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:DsbA-like
28c2mjlA_



not modelled 7.3 15
PDB header:hydrolase
Chain: A: PDB Molecule:peptidyl-trna hydrolase;
PDBTitle: solution structure of peptidyl-trna hyrolase from vibrio cholerae
29d1z6na1



not modelled 7.0 30
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
30d1t3ba1



not modelled 6.7 6
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:DsbC/DsbG C-terminal domain-like
31c4rs7R_



not modelled 6.7 21
PDB header:dna binding protein
Chain: R: PDB Molecule:parb-c;
PDBTitle: structure of pnob8 parb-c
32c2qv8B_



not modelled 6.5 4
PDB header:transport protein
Chain: B: PDB Molecule:general secretion pathway protein h;
PDBTitle: structure of the minor pseudopilin epsh from the type 2 secretion2 system of vibrio cholerae
33c2odkD_



not modelled 6.5 17
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:hypothetical protein;
PDBTitle: putative prevent-host-death protein from nitrosomonas europaea
34d1ftra1



not modelled 6.4 39
Fold:Ferredoxin-like
Superfamily:Formylmethanofuran:tetrahydromethanopterin formyltransferase
Family:Formylmethanofuran:tetrahydromethanopterin formyltransferase
35c5lcyD_



not modelled 6.0 16
PDB header:transcription
Chain: D: PDB Molecule:frmr;
PDBTitle: formaldehyde-responsive regulator frmr e64h variant from salmonella2 enterica serovar typhimurium
36c1wx4B_



not modelled 5.8 8
PDB header:oxidoreductase/metal transport
Chain: B: PDB Molecule:melc;
PDBTitle: crystal structure of the oxy-form of the copper-bound streptomyces2 castaneoglobisporus tyrosinase complexed with a caddie protein3 prepared by the addition of dithiothreitol
37c2hh7A_



not modelled 5.5 13
PDB header:unknown function
Chain: A: PDB Molecule:hypothetical protein csor;
PDBTitle: crystal structure of cu(i) bound csor from mycobacterium tuberculosis.
38c3tsaA_



not modelled 5.2 18
PDB header:transferase
Chain: A: PDB Molecule:ndp-rhamnosyltransferase;
PDBTitle: spinosyn rhamnosyltransferase spng

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below