Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3921c_(-)_4409146_4410246
DateSat Aug 10 22:05:11 BST 2019
Unique Job ID0e879177a625abef
SequenceVSLLFDFFSL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:55.332 Y:53.916 Z:65.331
Model (left) based on template c3wvfA_
Top template information
PDB header:chaperone
Chain: A: PDB Molecule:membrane protein insertase yidc;
PDBTitle: crystal structure of yidc from escherichia coli
Confidence and coverage
Confidence:100.0% Coverage: 52%
192 residues ( 52% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3wvfA_



100.0 30
PDB header:chaperone
Chain: A: PDB Molecule:membrane protein insertase yidc;
PDBTitle: crystal structure of yidc from escherichia coli
2c3wo6A_



100.0 31
PDB header:membrane protein
Chain: A: PDB Molecule:membrane protein insertase yidc 2;
PDBTitle: crystal structure of yidc from bacillus halodurans (form i)
3c5y83A_



100.0 28
PDB header:transport protein
Chain: A: PDB Molecule:membrane protein insertase yidc;
PDBTitle: crystal structure of yidc from thermotoga maritima
4c4utqA_



100.0 31
PDB header:protein transport
Chain: A: PDB Molecule:membrane protein insertase yidc;
PDBTitle: a structural model of the active ribosome-bound membrane protein2 insertase yidc
5c6n3qD_



45.2 21
PDB header:transport protein
Chain: D: PDB Molecule:protein translocation protein sec63;
PDBTitle: cryo-em structure of the yeast sec complex
6d1v54d_



43.5 17
Fold:Single transmembrane helix
Superfamily:Mitochondrial cytochrome c oxidase subunit IV
Family:Mitochondrial cytochrome c oxidase subunit IV
7c2y69Q_



42.8 17
PDB header:electron transport
Chain: Q: PDB Molecule:cytochrome c oxidase subunit 4 isoform 1;
PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular oxygen
8c3r45C_



36.7 28
PDB header:nuclear protein
Chain: C: PDB Molecule:holliday junction recognition protein;
PDBTitle: structure of a cenp-a-histone h4 heterodimer in complex with chaperone2 hjurp
9c2avuF_



26.2 26
PDB header:transcription activator
Chain: F: PDB Molecule:flagellar transcriptional activator flhc;
PDBTitle: structure of the escherichia coli flhdc complex, a2 prokaryotic heteromeric regulator of transcription
10d2avue1



24.3 25
Fold:FlhC-like
Superfamily:FlhC-like
Family:FlhC-like
11c5dayA_



22.2 9
PDB header:chaperone
Chain: A: PDB Molecule:nap1-related protein 1;
PDBTitle: the structure of nap1-related protein(nrp1) in arabidopsis
12c6k1hF_



21.9 8
PDB header:protein transport
Chain: F: PDB Molecule:pts system mannose-specific eiid component;
PDBTitle: structure of membrane protein
13d1ryka_



21.5 15
Fold:SAM domain-like
Superfamily:Hypothetical protein YjbJ
Family:Hypothetical protein YjbJ
14c6iu8C_



19.3 19
PDB header:metal transport
Chain: C: PDB Molecule:vit1;
PDBTitle: crystal structure of cytoplasmic metal binding domain with cobalt ions
15c2hyxA_



18.9 14
PDB header:unknown function
Chain: A: PDB Molecule:protein dipz;
PDBTitle: structure of the c-terminal domain of dipz from mycobacterium2 tuberculosis
16c2do5A_



18.7 24
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:splicing factor 3b subunit 2;
PDBTitle: solution structure of the sap domain of human splicing2 factor 3b subunit 2
17c1p58C_



16.9 15
PDB header:virus
Chain: C: PDB Molecule:major envelope protein e;
PDBTitle: complex organization of dengue virus membrane proteins as revealed by2 9.5 angstrom cryo-em reconstruction
18c6gc1A_



16.7 14
PDB header:unknown function
Chain: A: PDB Molecule:nhl repeat-containing protein 2;
PDBTitle: crystal structure of trx-like and nhl repeat containing domains of2 human nhlrc2
19c4l0nG_



14.4 27
PDB header:transferase
Chain: G: PDB Molecule:serine/threonine-protein kinase 3;
PDBTitle: crystal structure of stk3 (mst2) sarah domain
20c2jo8B_



14.1 24
PDB header:transferase
Chain: B: PDB Molecule:serine/threonine-protein kinase 4;
PDBTitle: solution structure of c-terminal domain of human mammalian2 sterile 20-like kinase 1 (mst1)
21d2e50a1



not modelled 12.1 18
Fold:NAP-like
Superfamily:NAP-like
Family:NAP-like
22d2ea9a1



not modelled 11.8 30
Fold:Profilin-like
Superfamily:YeeU-like
Family:YagB/YeeU/YfjZ-like
23c2ymyB_



not modelled 11.5 41
PDB header:apoptosis
Chain: B: PDB Molecule:ras association domain-containing protein 5;
PDBTitle: structure of the murine nore1-sarah domain
24d2h28a1



not modelled 11.4 20
Fold:Profilin-like
Superfamily:YeeU-like
Family:YagB/YeeU/YfjZ-like
25d2inwa1



not modelled 10.5 20
Fold:Profilin-like
Superfamily:YeeU-like
Family:YagB/YeeU/YfjZ-like
26c6a70B_



not modelled 10.5 14
PDB header:membrane protein
Chain: B: PDB Molecule:polycystin-1;
PDBTitle: structure of the human pkd1/pkd2 complex
27c6onpA_



not modelled 10.1 7
PDB header:unknown function
Chain: A: PDB Molecule:periplasmic binding protein xoxj;
PDBTitle: crystal structure of periplasmic binding protein xoxj from2 methylobacterium extorquens am1
28d1lvaa3



not modelled 9.9 10
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:C-terminal fragment of elongation factor SelB
29c2ncaA_



not modelled 9.9 18
PDB header:chaperone
Chain: A: PDB Molecule:hsp90 co-chaperone cdc37;
PDBTitle: structural model for the n-terminal domain of human cdc37
30c6iu3A_



not modelled 9.6 14
PDB header:metal transport
Chain: A: PDB Molecule:vit1;
PDBTitle: crystal structure of iron transporter vit1 with zinc ions
31d1ojra_



not modelled 9.4 25
Fold:AraD/HMP-PK domain-like
Superfamily:AraD/HMP-PK domain-like
Family:AraD-like aldolase/epimerase
32c5z10C_



not modelled 9.2 10
PDB header:membrane protein
Chain: C: PDB Molecule:piezo-type mechanosensitive ion channel component 1;
PDBTitle: structure of the mechanosensitive piezo1 channel
33c5sv6A_



not modelled 9.1 14
PDB header:unknown function
Chain: A: PDB Molecule:extracellular solute-binding protein, family 3;
PDBTitle: crystal structure of mxaj from methlophaga aminisulfidivorans mpt
34c2ayuA_



not modelled 8.1 7
PDB header:chaperone
Chain: A: PDB Molecule:nucleosome assembly protein;
PDBTitle: the structure of nucleosome assembly protein suggests a mechanism for2 histone binding and shuttling
35d2ayua1



not modelled 8.1 7
Fold:NAP-like
Superfamily:NAP-like
Family:NAP-like
36d2cp8a1



not modelled 8.0 28
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
37c2mbyA_



not modelled 7.5 28
PDB header:rna binding protein
Chain: A: PDB Molecule:ribosomal rna-processing protein 7;
PDBTitle: nmr structure of rrp7 c-terminal domain
38c6n2gC_



not modelled 7.4 10
PDB header:chaperone
Chain: C: PDB Molecule:nucleosome assembly protein;
PDBTitle: crystal structure of caenorhabditis elegans nap1
39c1ywwA_



not modelled 7.3 26
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein pa4738;
PDBTitle: nmr structure of p. aeruginosa protein pa4738: northeast2 structural genomics consortium target pap2
40c4a1qB_



not modelled 7.1 38
PDB header:viral protein
Chain: B: PDB Molecule:orf e73;
PDBTitle: solution structure of e73 protein from sulfolobus spindle-2 shaped virus ragged hills, a hyperthermophilic3 crenarchaeal virus from yellowstone national park
41c4aaiB_



not modelled 7.1 38
PDB header:viral protein
Chain: B: PDB Molecule:orf e73;
PDBTitle: thermostable protein from hyperthermophilic virus ssv-rh
42c3emxB_



not modelled 7.1 14
PDB header:oxidoreductase
Chain: B: PDB Molecule:thioredoxin;
PDBTitle: crystal structure of thioredoxin from aeropyrum pernix
43c3fs3A_



not modelled 6.9 12
PDB header:chaperone
Chain: A: PDB Molecule:nucleosome assembly protein 1, putative;
PDBTitle: crystal structure of malaria parasite nucleosome assembly protein2 (nap)
44c2kuaA_



not modelled 6.8 23
PDB header:apoptosis
Chain: A: PDB Molecule:bcl-2-like protein 10;
PDBTitle: solution structure of a divergent bcl-2 protein
45c3hfdA_



not modelled 6.5 12
PDB header:chaperone, protein transport
Chain: A: PDB Molecule:nucleosome assembly protein 1;
PDBTitle: nucleosome assembly protein 1 from plasmodium knowlesi
46c6hl2C_



not modelled 6.4 25
PDB header:electron transport
Chain: C: PDB Molecule:nadh-quinone oxidoreductase subunit e;
PDBTitle: wild-type nuoef from aquifex aeolicus - oxidized form
47c2kmuA_



not modelled 6.3 16
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent dna helicase q4;
PDBTitle: recql4 amino-terminal domain
48c2k1aA_



not modelled 6.3 12
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment
49c6nd1A_



not modelled 6.1 23
PDB header:protein transport
Chain: A: PDB Molecule:protein translocation protein sec63;
PDBTitle: cryoem structure of the sec complex from yeast
50c2kncA_



not modelled 6.0 11
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
51c3gyvA_



not modelled 6.0 12
PDB header:chaperone
Chain: A: PDB Molecule:nucleosome assembly protein 1, putative;
PDBTitle: crystal structure of nucleosome assembly protein from plasmodium2 falciparum
52c2qf9B_



not modelled 5.8 3
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative secreted protein;
PDBTitle: crystal structure of putative secreted protein duf305 from2 streptomyces coelicolor
53c2rmrA_



not modelled 5.8 12
PDB header:transcription
Chain: A: PDB Molecule:paired amphipathic helix protein sin3a;
PDBTitle: solution structure of msin3a pah1 domain
54c3tijA_



not modelled 5.7 17
PDB header:membrane protein
Chain: A: PDB Molecule:nupc family protein;
PDBTitle: crystal structure of a concentrative nucleoside transporter from2 vibrio cholerae
55c5ireA_



not modelled 5.6 16
PDB header:virus
Chain: A: PDB Molecule:e protein;
PDBTitle: the cryo-em structure of zika virus
56d2axtk1



not modelled 5.6 18
Fold:Single transmembrane helix
Superfamily:Photosystem II reaction center protein K, PsbK
Family:PsbK-like
57c5hvdA_



not modelled 5.6 10
PDB header:transport protein
Chain: A: PDB Molecule:ion transport protein;
PDBTitle: full length open-form sodium channel navms i218c
58c5b16C_



not modelled 5.6 33
PDB header:hydrolase
Chain: C: PDB Molecule:microprocessor complex subunit dgcr8;
PDBTitle: x-ray structure of drosha in complex with the c-terminal tail of2 dgcr8.
59c1vw4a_



not modelled 5.5 20
PDB header:ribosome
Chain: A: PDB Molecule:
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
60c3bt5A_



not modelled 5.4 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein duf305;
PDBTitle: crystal structure of duf305 fragment from deinococcus radiodurans
61c4b4sA_



not modelled 5.4 22
PDB header:apoptosis
Chain: A: PDB Molecule:bcl-2-like protein 10;
PDBTitle: crystal structure of a pro-survival bcl-2:bim bh3 complex
62c2okqB_



not modelled 5.4 25
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein ybaa;
PDBTitle: crystal structure of unknown conserved ybaa protein from shigella2 flexneri
63c1z65A_



not modelled 5.4 7
PDB header:unknown function
Chain: A: PDB Molecule:prion-like protein doppel;
PDBTitle: mouse doppel 1-30 peptide
64c5b16B_



not modelled 5.3 33
PDB header:hydrolase
Chain: B: PDB Molecule:microprocessor complex subunit dgcr8;
PDBTitle: x-ray structure of drosha in complex with the c-terminal tail of2 dgcr8.
65c4pvzC_



not modelled 5.3 13
PDB header:protein binding
Chain: C: PDB Molecule:inner nuclear membrane protein heh2;
PDBTitle: structure of yeast importin a bound to the membrane protein nuclear2 localization signal sequence of inm protein heh2
66c2lckA_



not modelled 5.2 14
PDB header:transport protein
Chain: A: PDB Molecule:mitochondrial uncoupling protein 2;
PDBTitle: structure of the mitochondrial uncoupling protein 2 determined by nmr2 molecular fragment replacement
67c2jv5A_



not modelled 5.2 21
PDB header:protein binding
Chain: A: PDB Molecule:reticulon-4;
PDBTitle: nogo54

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Transmembrane helix prediction 

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