Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3922c_(-)_4410230_4410592
DateSat Aug 10 22:05:11 BST 2019
Unique Job ID8823adc803198367
SequenceVSLSRQSCGR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:23.061 Y:22.709 Z:14.254
Model (left) based on template c5lc5q_
Top template information
PDB header:oxidoreductase
Chain: Q: PDB Molecule:nadh dehydrogenase [ubiquinone] iron-sulfur protein 4,
PDBTitle: structure of mammalian respiratory complex i, class2
Confidence and coverage
Confidence: 35.0% Coverage: 17%
20 residues ( 17% of your sequence) have been modelled with 35.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5lc5q_



35.0 25
PDB header:oxidoreductase
Chain: Q: PDB Molecule:nadh dehydrogenase [ubiquinone] iron-sulfur protein 4,
PDBTitle: structure of mammalian respiratory complex i, class2
2c4nqkD_



30.3 12
PDB header:hydrolase/apoptosis
Chain: D: PDB Molecule:probable atp-dependent rna helicase ddx58;
PDBTitle: structure of an ubiquitin complex
3c3zj1A_



20.4 44
PDB header:rna binding protein
Chain: A: PDB Molecule:nuclear polyadenylated rna-binding protein nab2;
PDBTitle: structure of nab2p tandem zinc finger 12
4c3oruA_



18.6 32
PDB header:metal binding protein
Chain: A: PDB Molecule:duf1989 family protein;
PDBTitle: crystal structure of a duf1989 family protein (tm1040_0329) from2 silicibacter sp. tm1040 at 1.11 a resolution
5c6e8dA_



17.8 36
PDB header:dna binding protein
Chain: A: PDB Molecule:beta sliding clamp,dna mismatch repair protein mutl;
PDBTitle: crystal structure of the bacillus subtilis sliding clamp-mutl complex.
6c5i0cA_



17.6 21
PDB header:hydrolase
Chain: A: PDB Molecule:uncharacterized protein yjdj;
PDBTitle: crystal structure of predicted acyltransferase yjdj with acyl-coa n-2 acyltransferase domain from escherichia coli str. k-12
7c6ekrA_



17.4 38
PDB header:hydrolase
Chain: A: PDB Molecule:type ii site-specific deoxyribonuclease;
PDBTitle: crystal structure of type iip restriction endonuclease kpn2i
8c5b37A_



15.2 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:tryptophan dehydrogenase;
PDBTitle: crystal structure of l-tryptophan dehydrogenase from nostoc2 punctiforme
9c1cdlH_



14.9 50
PDB header:calcium-binding protein
Chain: H: PDB Molecule:calcium/calmodulin-dependent protein kinase type
PDBTitle: target enzyme recognition by calmodulin: 2.4 angstroms2 structure of a calmodulin-peptide complex
10c5jthB_



14.8 50
PDB header:transferase
Chain: B: PDB Molecule:myosin light chain kinase, smooth muscle;
PDBTitle: crystal structure of e67a calmodulin - cam:rm20 complex
11c5jqaB_



14.8 50
PDB header:calcium binding protein/protein binding
Chain: B: PDB Molecule:myosin light chain kinase, smooth muscle;
PDBTitle: cam:rm20 complex
12c1cdlE_



14.8 50
PDB header:calcium-binding protein
Chain: E: PDB Molecule:calcium/calmodulin-dependent protein kinase type
PDBTitle: target enzyme recognition by calmodulin: 2.4 angstroms2 structure of a calmodulin-peptide complex
13c1cdlF_



14.8 50
PDB header:calcium-binding protein
Chain: F: PDB Molecule:calcium/calmodulin-dependent protein kinase type
PDBTitle: target enzyme recognition by calmodulin: 2.4 angstroms2 structure of a calmodulin-peptide complex
14c1cdlG_



14.7 50
PDB header:calcium-binding protein
Chain: G: PDB Molecule:calcium/calmodulin-dependent protein kinase type
PDBTitle: target enzyme recognition by calmodulin: 2.4 angstroms2 structure of a calmodulin-peptide complex
15d3blha1



14.7 20
Fold:Protein kinase-like (PK-like)
Superfamily:Protein kinase-like (PK-like)
Family:Protein kinases, catalytic subunit
16c2cseB_



14.5 20
PDB header:virus
Chain: B: PDB Molecule:major outer-capsid protein mu1;
PDBTitle: features of reovirus outer-capsid protein mu1 revealed by2 electron and image reconstruction of the virion at 7.0-a3 resolution
17c1qtxB_



14.5 50
PDB header:signaling protein
Chain: B: PDB Molecule:protein (rs20);
PDBTitle: the 1.65 angstrom structure of calmodulin rs20 peptide2 complex
18c2o5gB_



14.3 50
PDB header:metal binding protein
Chain: B: PDB Molecule:smooth muscle myosin light chain kinase peptide;
PDBTitle: calmodulin-smooth muscle light chain kinase peptide complex
19c1qs7B_



13.8 50
PDB header:metal binding protein/peptide
Chain: B: PDB Molecule:rs20;
PDBTitle: the 1.8 angstrom structure of calmodulin rs20 peptide2 complex
20c1vrkB_



13.7 50
PDB header:complex(calcium-binding protein/peptide)
Chain: B: PDB Molecule:rs20;
PDBTitle: the 1.9 angstrom structure of e84k-calmodulin rs20 peptide2 complex
21c1qs7D_



not modelled 12.6 50
PDB header:metal binding protein/peptide
Chain: D: PDB Molecule:rs20;
PDBTitle: the 1.8 angstrom structure of calmodulin rs20 peptide2 complex
22c1jmuD_



not modelled 12.4 23
PDB header:viral protein
Chain: D: PDB Molecule:protein mu-1;
PDBTitle: crystal structure of the reovirus mu1/sigma3 complex
23c2lweA_



not modelled 10.8 11
PDB header:signaling protein
Chain: A: PDB Molecule:probable atp-dependent rna helicase ddx58;
PDBTitle: solution structure of mutant (t170e) second card of human rig-i
24d2j0141



not modelled 10.5 43
Fold:L28p-like
Superfamily:L28p-like
Family:Ribosomal protein L31p
25c2j034_



not modelled 10.5 43
PDB header:ribosome
Chain: 4: PDB Molecule:50s ribosomal protein l31;
PDBTitle: structure of the thermus thermophilus 70s ribosome2 complexed with mrna, trna and paromomycin (part 4 of 4).3 this file contains the 50s subunit from molecule ii.
26c2n5xA_



not modelled 10.0 44
PDB header:chaperone
Chain: A: PDB Molecule:hsp90 co-chaperone cdc37;
PDBTitle: c-terminal domain of cdc37 cochaperone
27c3bbo1_



not modelled 9.1 29
PDB header:ribosome
Chain: 1: PDB Molecule:ribosomal protein l31;
PDBTitle: homology model for the spinach chloroplast 50s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome
28c3k8zD_



not modelled 8.2 30
PDB header:oxidoreductase
Chain: D: PDB Molecule:nad-specific glutamate dehydrogenase;
PDBTitle: crystal structure of gudb1 a decryptified secondary glutamate2 dehydrogenase from b. subtilis
29c5c6gA_



not modelled 7.9 12
PDB header:cell cycle
Chain: A: PDB Molecule:agr133cp;
PDBTitle: structural insights into the scc2-scc4 cohesin loader
30c3k1qP_



not modelled 7.8 21
PDB header:
PDB COMPND:
31c6dzpg_



not modelled 7.6 29
PDB header:ribosome
Chain: G: PDB Molecule:50s ribosomal protein l6;
PDBTitle: cryo-em structure of mycobacterium smegmatis c(minus) 50s ribosomal2 subunit
32c2nx6A_



not modelled 7.5 50
PDB header:structural protein
Chain: A: PDB Molecule:nematocyst outer wall antigen;
PDBTitle: structure of nowa cysteine rich domain 6
33c2b664_



not modelled 7.5 29
PDB header:ribosome
Chain: 4: PDB Molecule:50s ribosomal protein l31;
PDBTitle: 50s ribosomal subunit from a crystal structure of release factor rf1,2 trnas and mrna bound to the ribosome. this file contains the 50s3 subunit from a crystal structure of release factor rf1, trnas and4 mrna bound to the ribosome and is described in remark 400
34d1vs6z1



not modelled 6.8 43
Fold:L28p-like
Superfamily:L28p-like
Family:Ribosomal protein L31p
35c3zj2A_



not modelled 6.8 50
PDB header:rna binding protein
Chain: A: PDB Molecule:nuclear polyadenylated rna-binding protein nab2;
PDBTitle: structure of nab2p tandem zinc finger 34
36c1q68A_



not modelled 6.8 42
PDB header:membrane protein/transferase
Chain: A: PDB Molecule:t-cell surface glycoprotein cd4;
PDBTitle: solution structure of t-cell surface glycoprotein cd4 and2 proto-oncogene tyrosine-protein kinase lck fragments
37d1bgva2



not modelled 6.8 27
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Aminoacid dehydrogenases
38c6nuwD_



not modelled 6.7 10
PDB header:cell cycle
Chain: D: PDB Molecule:inner kinetochore subunit ctf19;
PDBTitle: yeast ctf19 complex
39d1shyb2



not modelled 6.6 42
Fold:Trefoil/Plexin domain-like
Superfamily:Plexin repeat
Family:Plexin repeat
40c2hgj3_



not modelled 6.6 43
PDB header:ribosome
Chain: 3: PDB Molecule:50s ribosomal protein l31;
PDBTitle: crystal structure of the 70s thermus thermophilus ribosome showing how2 the 16s 3'-end mimicks mrna e and p codons. this entry 2hgj contains3 50s ribosomal subunit. the 30s ribosomal subunit can be found in pdb4 entry 2hgi.
41c5o60g_



not modelled 5.9 43
PDB header:ribosome
Chain: G: PDB Molecule:50s ribosomal protein l6;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
42c1bvuF_



not modelled 5.8 27
PDB header:oxidoreductase
Chain: F: PDB Molecule:protein (glutamate dehydrogenase);
PDBTitle: glutamate dehydrogenase from thermococcus litoralis
43c2mj2A_



not modelled 5.5 31
PDB header:viral protein
Chain: A: PDB Molecule:agnoprotein;
PDBTitle: structure of the dimerization domain of the human polyoma, jc virus2 agnoprotein is an amphipathic alpha-helix.
44d1ut7a_



not modelled 5.3 50
Fold:NAC domain
Superfamily:NAC domain
Family:NAC domain
45c2tmgD_



not modelled 5.1 33
PDB header:oxidoreductase
Chain: D: PDB Molecule:protein (glutamate dehydrogenase);
PDBTitle: thermotoga maritima glutamate dehydrogenase mutant s128r,2 t158e, n117r, s160e
46c5n4cG_



not modelled 5.0 40
PDB header:hydrolase
Chain: G: PDB Molecule:alpha-amanitin proprotein;
PDBTitle: prolyl oligopeptidase b from galerina marginata bound to 35mer2 hydrolysis and macrocyclization substrate - s577a mutant
47c3aoeC_



not modelled 5.0 30
PDB header:oxidoreductase
Chain: C: PDB Molecule:glutamate dehydrogenase;
PDBTitle: crystal structure of hetero-hexameric glutamate dehydrogenase from2 thermus thermophilus (leu bound form)

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Transmembrane helix prediction 

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