1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		L	I	A	T	P	G	L	F	A	V	L	R	A	R	N	R	M	R	R	S	A	D	F	E	T	T	V	K	H	G	M	R	T	V	R	S	D	M	V	V	Y	W	W	R	G	S	G	G	G	P	R	V	G	L	I	I	A	K	S	V
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?				?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	S	A	V	E	R	H	R	V	A	R	R	L	R	H	V	A	G	S	I	V	K	E	L	H	P	S	D	H	V	V	I	R	A	L	P	S	S	R	H	V	S	S	A	R	L	E	Q	Q	L	R	C	G	L	R	R	A	V	E	L
Secondary structure
SS confidence
Disorder																																							?				?																		?
Disorder confidence
		.	.	.	.	.
Sequence		A	G	S	D	R
Secondary structure
SS confidence
Disorder		?	?	?	?	?
Disorder confidence

Confidence Key High(9)                     Low (0)

? Disordered ( 18%) Alpha helix ( 50%) Beta strand ( 16%)

Rank Aligned region

PDB 1d6t chain A Region: 10 - 125 Aligned: 115 Modelled: 116 Confidence: 100.0% Identity: 20% Fold: Ribosomal protein S5 domain 2-like Superfamily: Ribosomal protein S5 domain 2-like Family: RNase P protein Phyre2 PDB 1a6f chain A Region: 9 - 121 Aligned: 112 Modelled: 113 Confidence: 100.0% Identity: 26% Fold: Ribosomal protein S5 domain 2-like Superfamily: Ribosomal protein S5 domain 2-like Family: RNase P protein Phyre2 PDB 2ljp chain A Region: 11 - 123 Aligned: 112 Modelled: 113 Confidence: 100.0% Identity: 26% PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease p protein component; PDBTitle: backbone 1h, 13c, and 15n chemical shift assignments for e.coli2 ribonuclease p protein Phyre2 PDB 1nz0 chain A Region: 15 - 117 Aligned: 103 Modelled: 103 Confidence: 100.0% Identity: 19% Fold: Ribosomal protein S5 domain 2-like Superfamily: Ribosomal protein S5 domain 2-like Family: RNase P protein Phyre2 PDB 4oxp chain A Region: 53 - 119 Aligned: 59 Modelled: 67 Confidence: 95.0% Identity: 12% PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease e; PDBTitle: x-ray crystal structure of the s1 and 5'-sensor domains of rnase e2 from caulobacter crescentus Phyre2 PDB 2c4r chain L Region: 55 - 116 Aligned: 47 Modelled: 47 Confidence: 52.4% Identity: 13% PDB header:hydrolase Chain: L: PDB Molecule:ribonuclease e; PDBTitle: catalytic domain of e. coli rnase e Phyre2 PDB 3b0z chain A Region: 61 - 92 Aligned: 32 Modelled: 32 Confidence: 16.7% Identity: 19% PDB header:protein transport Chain: A: PDB Molecule:flagellar biosynthetic protein flhb; PDBTitle: crystal structure of cytoplasmic domain of flhb from salmonella2 typhimurium Phyre2 PDB 5ayc chain A Region: 26 - 58 Aligned: 33 Modelled: 33 Confidence: 16.2% Identity: 9% PDB header:transferase Chain: A: PDB Molecule:4-o-beta-d-mannosyl-d-glucose phosphorylase; PDBTitle: crystal structure of ruminococcus albus 4-o-beta-d-mannosyl-d-glucose2 phosphorylase (ramp1) in complexes with sulfate and 4-o-beta-d-3 mannosyl-d-glucose Phyre2 PDB 2ml9 chain A Region: 61 - 92 Aligned: 32 Modelled: 32 Confidence: 10.7% Identity: 16% PDB header:membrane protein Chain: A: PDB Molecule:yop proteins translocation protein u; PDBTitle: solution structure of yscucn in a micellar complex with sds Phyre2 PDB 3b1s chain C Region: 65 - 92 Aligned: 28 Modelled: 28 Confidence: 9.9% Identity: 32% PDB header:protein transport Chain: C: PDB Molecule:flagellar biosynthetic protein flhb; PDBTitle: crystal structure of the cytoplasmic domain of flhb from aquifex2 aeolicus Phyre2 PDB 3b1s chain A Region: 65 - 92 Aligned: 28 Modelled: 28 Confidence: 9.9% Identity: 32% PDB header:protein transport Chain: A: PDB Molecule:flagellar biosynthetic protein flhb; PDBTitle: crystal structure of the cytoplasmic domain of flhb from aquifex2 aeolicus Phyre2 PDB 3qc3 chain B Region: 87 - 120 Aligned: 34 Modelled: 32 Confidence: 9.4% Identity: 12% PDB header:isomerase Chain: B: PDB Molecule:d-ribulose-5-phosphate-3-epimerase; PDBTitle: crystal structure of a d-ribulose-5-phosphate-3-epimerase (np_954699)2 from homo sapiens at 2.20 a resolution Phyre2 PDB 3b1s chain E Region: 65 - 92 Aligned: 28 Modelled: 28 Confidence: 9.1% Identity: 32% PDB header:protein transport Chain: E: PDB Molecule:flagellar biosynthetic protein flhb; PDBTitle: crystal structure of the cytoplasmic domain of flhb from aquifex2 aeolicus Phyre2 PDB 1vpz chain A Region: 35 - 60 Aligned: 26 Modelled: 26 Confidence: 9.0% Identity: 27% Fold: CsrA-like Superfamily: CsrA-like Family: CsrA-like Phyre2 PDB 2jpp chain B Region: 35 - 60 Aligned: 26 Modelled: 26 Confidence: 8.6% Identity: 27% PDB header:translation/rna Chain: B: PDB Molecule:translational repressor; PDBTitle: structural basis of rsma/csra rna recognition: structure of2 rsme bound to the shine-dalgarno sequence of hcna mrna Phyre2 PDB 1vpz chain B Region: 35 - 60 Aligned: 26 Modelled: 26 Confidence: 8.5% Identity: 27% PDB header:rna binding protein Chain: B: PDB Molecule:carbon storage regulator homolog; PDBTitle: crystal structure of a putative carbon storage regulator protein2 (csra, pa0905) from pseudomonas aeruginosa at 2.05 a resolution Phyre2 PDB 5dmb chain D Region: 35 - 60 Aligned: 26 Modelled: 26 Confidence: 8.3% Identity: 19% PDB header:translation Chain: D: PDB Molecule:carbon storage regulator homolog; PDBTitle: crystal structure of a translational regulator bound to a flagellar2 assembly factor Phyre2 PDB 5usr chain B Region: 57 - 82 Aligned: 26 Modelled: 26 Confidence: 8.1% Identity: 19% PDB header:transferase Chain: B: PDB Molecule:lyr motif-containing protein 4; PDBTitle: crystal structure of human nfs1-isd11 in complex with e. coli acyl-2 carrier protein at 3.09 angstroms Phyre2 PDB 2kjw chain A Region: 85 - 116 Aligned: 32 Modelled: 32 Confidence: 8.0% Identity: 16% PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s6; PDBTitle: solution structure and backbone dynamics of the permutant p54-55 Phyre2 PDB 2jfg chain A domain 2 Region: 73 - 117 Aligned: 44 Modelled: 45 Confidence: 7.0% Identity: 7% Fold: MurD-like peptide ligases, peptide-binding domain Superfamily: MurD-like peptide ligases, peptide-binding domain Family: MurCDEF C-terminal domain Phyre2 1 d1d6ta_ 2 d1a6fa_ 3 c2ljpA_ 4 d1nz0a_ 5 c4oxpA_ 6 c2c4rL_ 7 c3b0zA_ 8 c5aycA_ 9 c2ml9A_ 10 c3b1sC_ 11 c3b1sA_ 12 c3qc3B_ 13 c3b1sE_ 14 d1vpza_ 15 c2jppB_ 16 c1vpzB_ 17 c5dmbD_ 18 c5usrB_ 19 c2kjwA_ 20 d2jfga2 21 22 23 24 25 26 27 28 29 30 31