Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0004_(-)_4434_4997
DateTue Jul 23 14:50:02 BST 2019
Unique Job ID195970c58cf8ea01
SequenceMTGSVDRPDQ ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:23.386 Y:30.404 Z:31.185
Model (left) based on template c4tpsD_
Top template information
PDB header:replication
Chain: D: PDB Molecule:chromosomal replication initiator protein dnaa;
PDBTitle: sporulation inhibitor of dna replication, sira, in complex with domain2 i of dnaa
Confidence and coverage
Confidence: 68.0% Coverage: 27%
51 residues ( 27% of your sequence) have been modelled with 68.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4tpsD_
68.0 14
PDB header:replication
Chain: D: PDB Molecule:chromosomal replication initiator protein dnaa;
PDBTitle: sporulation inhibitor of dna replication, sira, in complex with domain2 i of dnaa
2c2ayaA_
45.3 19
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase iii subunit tau;
PDBTitle: solution structure of the c-terminal 14 kda domain of the2 tau subunit from escherichia coli dna polymerase iii
3c2e0gA_
45.1 13
PDB header:replication
Chain: A: PDB Molecule:chromosomal replication initiator protein dnaa;
PDBTitle: dnaa n-terminal domain
4d1q52a_
41.9 15
Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Crotonase-like
5d1rjma_
19.5 18
Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Crotonase-like
6c6cfzC_
17.0 38
PDB header:nuclear protein
Chain: C: PDB Molecule:dad2;
PDBTitle: structure of the dash/dam1 complex shows its role at the yeast2 kinetochore-microtubule interface
7d2d28c1
13.3 20
Fold:Alpha-lytic protease prodomain-like
Superfamily:EspE N-terminal domain-like
Family:GSPII protein E N-terminal domain-like
8c3h02F_
12.2 16
PDB header:lyase
Chain: F: PDB Molecule:naphthoate synthase;
PDBTitle: 2.15 angstrom resolution crystal structure of naphthoate synthase from2 salmonella typhimurium.
9c2jpiA_
11.4 11
PDB header:structural genomics
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: chemical shift assignments of pa4090 from pseudomonas2 aeruginosa
10d1nr3a_
10.9 17
Fold:DNA-binding protein Tfx
Superfamily:DNA-binding protein Tfx
Family:DNA-binding protein Tfx
11c6f8lJ_
10.7 21
PDB header:motor protein
Chain: J: PDB Molecule:type iv pilus assembly protein pilf;
PDBTitle: thermus thermophilus pilf atpase (amppnp-bound form)
12c2ahqA_
10.5 33
PDB header:transcription
Chain: A: PDB Molecule:rna polymerase sigma factor rpon;
PDBTitle: solution structure of the c-terminal rpon domain of sigma-2 54 from aquifex aeolicus
13d16vpa_
10.4 26
Fold:Conserved core of transcriptional regulatory protein vp16
Superfamily:Conserved core of transcriptional regulatory protein vp16
Family:Conserved core of transcriptional regulatory protein vp16
14d1pjqa3
10.2 20
Fold:Siroheme synthase middle domains-like
Superfamily:Siroheme synthase middle domains-like
Family:Siroheme synthase middle domains-like
15c1cirA_
9.2 33
PDB header:serine protease inhibitor
Chain: A: PDB Molecule:chymotrypsin inhibitor 2;
PDBTitle: complex of two fragments of ci2 [(1-40)(dot)(41-64)]
16c2p9xB_
9.0 29
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein ph0832;
PDBTitle: crystal structure of ph0832 from pyrococcus horikoshii ot3
17c6ahqM_
8.7 27
PDB header:motor protein
Chain: M: PDB Molecule:flagellar protein flil;
PDBTitle: structure of the 40-167 fragment of flil
18c2mt3A_
8.7 28
PDB header:transcription
Chain: A: PDB Molecule:rna polymerase sigma-54 factor;
PDBTitle: structure of -24 dna binding domain of sigma 54 from e.coli
19c3f43A_
8.5 11
PDB header:transcription
Chain: A: PDB Molecule:putative anti-sigma factor antagonist tm1081;
PDBTitle: crystal structure of a putative anti-sigma factor antagonist (tm1081)2 from thermotoga maritima at 1.59 a resolution
20c2mtgA_
7.9 17
PDB header:rna binding protein
Chain: A: PDB Molecule:la-related protein 6;
PDBTitle: solution structure of the rrm1 of human larp6
21c1rjnC_
not modelled 7.5 15
PDB header:lyase
Chain: C: PDB Molecule:menb;
PDBTitle: the crystal structure of menb (rv0548c) from mycobacterium2 tuberculosis in complex with the coa portion of naphthoyl coa
22d1hska2
not modelled 7.4 15
Fold:Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
Superfamily:Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
Family:Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
23c3r0oA_
not modelled 6.9 14
PDB header:lyase
Chain: A: PDB Molecule:carnitinyl-coa dehydratase;
PDBTitle: crystal structure of carnitinyl-coa hydratase from mycobacterium avium
24d1pjha_
not modelled 6.6 13
Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Crotonase-like
25c2o8kA_
not modelled 6.4 33
PDB header:transcription/dna
Chain: A: PDB Molecule:rna polymerase sigma factor rpon;
PDBTitle: nmr structure of the sigma-54 rpon domain bound to the-242 promoter element
26c3lkeA_
not modelled 6.4 16
PDB header:lyase
Chain: A: PDB Molecule:enoyl-coa hydratase;
PDBTitle: crystal structure of enoyl-coa hydratase from bacillus halodurans
27c5iolC_
not modelled 6.2 13
PDB header:transferase
Chain: C: PDB Molecule:nucleoside diphosphate kinase;
PDBTitle: crystal structure of nucleoside diphosphate kinase from schistosoma2 mansoni
28c3cazA_
not modelled 6.2 46
PDB header:signaling protein
Chain: A: PDB Molecule:bar protein;
PDBTitle: crystal structure of a bar protein from galdieria sulphuraria
29d2ch5a1
not modelled 6.1 8
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:BadF/BadG/BcrA/BcrD-like
30d1dwka2
not modelled 6.0 15
Fold:Cyanase C-terminal domain
Superfamily:Cyanase C-terminal domain
Family:Cyanase C-terminal domain
31c1hymA_
not modelled 5.8 33
PDB header:hydrolase (serine proteinase)
Chain: A: PDB Molecule:hydrolyzed cucurbita maxima trypsin inhibitor v;
PDBTitle: hydrolyzed trypsin inhibitor (cmti-v, minimized average nmr structure)
32c2iexA_
not modelled 5.8 9
PDB header:lyase
Chain: A: PDB Molecule:dihydroxynapthoic acid synthetase;
PDBTitle: crystal structure of dihydroxynapthoic acid synthetase (gk2873) from2 geobacillus kaustophilus hta426
33d1dwma_
not modelled 5.7 50
Fold:CI-2 family of serine protease inhibitors
Superfamily:CI-2 family of serine protease inhibitors
Family:CI-2 family of serine protease inhibitors
34c2ci2I_
not modelled 5.7 50
PDB header:proteinase inhibitor (chymotrypsin)
Chain: I: PDB Molecule:chymotrypsin inhibitor 2;
PDBTitle: crystal and molecular structure of the serine proteinase inhibitor ci-2 2 from barley seeds
35d1to2i_
not modelled 5.7 50
Fold:CI-2 family of serine protease inhibitors
Superfamily:CI-2 family of serine protease inhibitors
Family:CI-2 family of serine protease inhibitors
36c3rdyA_
not modelled 5.7 50
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:bwi-1=protease inhibitor/trypsin inhibitor;
PDBTitle: crystal structure of buckwheat trypsin inhibitor rbti at 1.84 angstrom2 resolution
37d1ypci_
not modelled 5.6 50
Fold:CI-2 family of serine protease inhibitors
Superfamily:CI-2 family of serine protease inhibitors
Family:CI-2 family of serine protease inhibitors
38d1csei_
not modelled 5.6 50
Fold:CI-2 family of serine protease inhibitors
Superfamily:CI-2 family of serine protease inhibitors
Family:CI-2 family of serine protease inhibitors
39c1vbwA_
not modelled 5.6 50
PDB header:protein binding
Chain: A: PDB Molecule:trypsin inhibitor bgit;
PDBTitle: crystal structure of bitter gourd trypsin inhibitor
40d2snii_
not modelled 5.6 50
Fold:CI-2 family of serine protease inhibitors
Superfamily:CI-2 family of serine protease inhibitors
Family:CI-2 family of serine protease inhibitors
41d1ucna_
not modelled 5.4 8
Fold:Ferredoxin-like
Superfamily:Nucleoside diphosphate kinase, NDK
Family:Nucleoside diphosphate kinase, NDK

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite