Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0025_(-)_29245_29607
DateTue Jul 23 14:50:05 BST 2019
Unique Job ID64c6bee548746364
SequenceMSEQAGSSVA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:49.358 Y:34.233 Z:49.858
Model (left) based on template c4p40A_
Top template information
PDB header:transport protein
Chain: A: PDB Molecule:copn;
PDBTitle: chlamydia pneumoniae copn
Confidence and coverage
Confidence: 70.1% Coverage: 98%
117 residues ( 98% of your sequence) have been modelled with 70.1% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4p40A_



70.1 13
PDB header:transport protein
Chain: A: PDB Molecule:copn;
PDBTitle: chlamydia pneumoniae copn
2c2jswA_



57.6 15
PDB header:actin-binding protein
Chain: A: PDB Molecule:talin-1;
PDBTitle: nmr structure of the talin c-terminal actin binding site
3c3tu3A_



30.7 39
PDB header:toxin/toxin chaperone
Chain: A: PDB Molecule:exou chaperone;
PDBTitle: 1.92 angstrom resolution crystal structure of the full-length spcu in2 complex with full-length exou from the type iii secretion system of3 pseudomonas aeruginosa
4c4akxA_



30.7 39
PDB header:transport protein
Chain: A: PDB Molecule:spcu;
PDBTitle: structure of the heterodimeric complex exou-spcu from the type iii2 secretion system (t3ss) of pseudomonas aeruginosa
5c5a29A_



17.5 22
PDB header:lyase
Chain: A: PDB Molecule:exopolygalacturonate lyase;
PDBTitle: family 2 pectate lyase from vibrio vulnificus
6c2v8kA_



16.7 9
PDB header:lyase
Chain: A: PDB Molecule:pectate lyase;
PDBTitle: structure of a family 2 pectate lyase in complex with trigalacturonic2 acid
7d1eera_



15.2 33
Fold:4-helical cytokines
Superfamily:4-helical cytokines
Family:Short-chain cytokines
8c1tqeX_



11.0 40
PDB header:transcription/protein binding/dna
Chain: X: PDB Molecule:histone deacetylase 9;
PDBTitle: mechanism of recruitment of class ii histone deacetylases by myocyte2 enhancer factor-2
9c1tqeY_



11.0 40
PDB header:transcription/protein binding/dna
Chain: Y: PDB Molecule:histone deacetylase 9;
PDBTitle: mechanism of recruitment of class ii histone deacetylases by myocyte2 enhancer factor-2
10c6cfzG_



10.5 33
PDB header:nuclear protein
Chain: G: PDB Molecule:hsk3;
PDBTitle: structure of the dash/dam1 complex shows its role at the yeast2 kinetochore-microtubule interface
11c5fv8B_



9.7 44
PDB header:structural protein
Chain: B: PDB Molecule:fosw;
PDBTitle: structure of cjun-fosw coiled coil complex.
12c6ohzA_



9.6 24
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: structure of an uncharacterized protein from leptospira borgpetersenii2 serovar hardjo-bovis (strain jb197)
13c3t4aG_



9.6 21
PDB header:immune system
Chain: G: PDB Molecule:fibrinogen-binding protein;
PDBTitle: structure of a truncated form of staphylococcal complement inhibitor b2 bound to human c3c at 3.4 angstrom resolution
14c5fv8A_



9.5 44
PDB header:structural protein
Chain: A: PDB Molecule:fosw;
PDBTitle: structure of cjun-fosw coiled coil complex.
15c5frgA_



9.4 29
PDB header:protein binding
Chain: A: PDB Molecule:formin-binding protein 1-like;
PDBTitle: the nmr structure of the cdc42-interacting region of toca1
16c6ao3B_



9.2 16
PDB header:immune system
Chain: B: PDB Molecule:gasdermin-d;
PDBTitle: crystal structure of the murine gasdermin d c-terminal domain
17c1d7mA_



8.8 24
PDB header:contractile protein
Chain: A: PDB Molecule:cortexillin i;
PDBTitle: coiled-coil dimerization domain from cortexillin i
18d1v7mv_



8.8 42
Fold:4-helical cytokines
Superfamily:4-helical cytokines
Family:Short-chain cytokines
19c4qkvB_



8.7 27
PDB header:transcription
Chain: B: PDB Molecule:polymerase i and transcript release factor;
PDBTitle: crystal structure of the mouse cavin1 hr1 domain
20d2k0bx1



8.1 25
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
21c5nh1A_



not modelled 8.1 19
PDB header:immune system
Chain: A: PDB Molecule:gasdermin-d;
PDBTitle: structure of the c-terminal domain of human gasdermin d
22c1y66D_



not modelled 8.0 24
PDB header:de novo protein
Chain: D: PDB Molecule:engrailed homeodomain;
PDBTitle: dioxane contributes to the altered conformation and2 oligomerization state of a designed engrailed homeodomain3 variant
23c4qkwB_



not modelled 7.9 17
PDB header:signaling protein
Chain: B: PDB Molecule:muscle-related coiled-coil protein;
PDBTitle: crystal structure of the zebrafish cavin4a hr1 domain
24c1usdA_



not modelled 7.6 26
PDB header:signaling protein
Chain: A: PDB Molecule:vasodilator-stimulated phosphoprotein;
PDBTitle: human vasp tetramerisation domain l352m
25d1ldda_



not modelled 7.3 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:SCF ubiquitin ligase complex WHB domain
26c2rmgA_



not modelled 7.3 50
PDB header:hormone
Chain: A: PDB Molecule:urocortin-2;
PDBTitle: human urocortin 2
27c2lrmB_



not modelled 7.2 34
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein ymgd;
PDBTitle: assignment and structure of e coli periplasmic protein ymgd
28c3cvgD_



not modelled 7.0 30
PDB header:metal binding protein
Chain: D: PDB Molecule:putative metal binding protein;
PDBTitle: crystal structure of a periplasmic putative metal binding protein
29d1t3ua_



not modelled 7.0 30
Fold:Cell division protein ZapA-like
Superfamily:Cell division protein ZapA-like
Family:Cell division protein ZapA-like
30c6cn0B_



not modelled 6.8 13
PDB header:transferase
Chain: B: PDB Molecule:16s rrna (guanine(1405)-n(7))-methyltransferase;
PDBTitle: 2.95 angstrom crystal structure of 16s rrna methylase from proteus2 mirabilis
31c2kztA_



not modelled 6.4 20
PDB header:apoptosis
Chain: A: PDB Molecule:programmed cell death protein 4;
PDBTitle: structure of the tandem ma-3 region of pdcd4
32d2fp1a1



not modelled 6.1 15
Fold:Chorismate mutase II
Superfamily:Chorismate mutase II
Family:Secreted chorismate mutase-like
33c5njlA_



not modelled 6.0 36
PDB header:cell adhesion
Chain: A: PDB Molecule:cell surface protein (putative s-layer protein);
PDBTitle: cwp2 from clostridium difficile
34c2jy8A_



not modelled 5.9 25
PDB header:protein binding
Chain: A: PDB Molecule:ubiquitin-binding protein p62;
PDBTitle: nmr structure of the ubiquitin associated (uba) domain of2 p62 (sqstm1) in complex with ubiquitin. rdc refined
35d1grja1



not modelled 5.9 34
Fold:Long alpha-hairpin
Superfamily:GreA transcript cleavage protein, N-terminal domain
Family:GreA transcript cleavage protein, N-terminal domain
36c4kd5A_



not modelled 5.7 25
PDB header:transport protein
Chain: A: PDB Molecule:abc-type transport system, molybdenum-specific
PDBTitle: substrate binding domain of putative molybdenum abc transporter from2 clostridium difficile
37c2qkdA_



not modelled 5.6 17
PDB header:signaling protein, cell cycle
Chain: A: PDB Molecule:zinc finger protein zpr1;
PDBTitle: crystal structure of tandem zpr1 domains
38c1n6jG_



not modelled 5.3 24
PDB header:transcription/dna
Chain: G: PDB Molecule:calcineurin-binding protein cabin 1;
PDBTitle: structural basis of sequence-specific recruitment of histone2 deacetylases by myocyte enhancer factor-2

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