Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0086_(hycQ)_93948_95414
DateTue Jul 23 14:50:12 BST 2019
Unique Job ID42420079602b05db
SequenceMTGLLLAAIL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:71.992 Y:56.953 Z:54.388
Model (left) based on template c4heaT_
Top template information
PDB header:oxidoreductase
Chain: T: PDB Molecule:nadh-quinone oxidoreductase subunit 12;
PDBTitle: crystal structure of the entire respiratory complex i from thermus2 thermophilus
Confidence and coverage
Confidence:100.0% Coverage: 92%
449 residues ( 92% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4heaT_
100.0 23
PDB header:oxidoreductase
Chain: T: PDB Molecule:nadh-quinone oxidoreductase subunit 12;
PDBTitle: crystal structure of the entire respiratory complex i from thermus2 thermophilus
2c3rkoM_
100.0 22
PDB header:oxidoreductase
Chain: M: PDB Molecule:nadh-quinone oxidoreductase subunit m;
PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution
3c3rkoL_
100.0 24
PDB header:oxidoreductase
Chain: L: PDB Molecule:nadh-quinone oxidoreductase subunit l;
PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution
4c6humB_
100.0 21
PDB header:proton transport
Chain: B: PDB Molecule:nad(p)h-quinone oxidoreductase subunit 2;
PDBTitle: structure of the photosynthetic complex i from thermosynechococcus2 elongatus
5c6humF_
100.0 22
PDB header:proton transport
Chain: F: PDB Molecule:nadh dehydrogenase subunit 5;
PDBTitle: structure of the photosynthetic complex i from thermosynechococcus2 elongatus
6c6humD_
100.0 21
PDB header:proton transport
Chain: D: PDB Molecule:nad(p)h-quinone oxidoreductase chain 4 1;
PDBTitle: structure of the photosynthetic complex i from thermosynechococcus2 elongatus
7c4he8M_
100.0 18
PDB header:oxidoreductase
Chain: M: PDB Molecule:nadh-quinone oxidoreductase subunit 13;
PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 thermus thermophilus
8c3rkoN_
100.0 21
PDB header:oxidoreductase
Chain: N: PDB Molecule:nadh-quinone oxidoreductase subunit n;
PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution
9c6gcs5_
100.0 20
PDB header:oxidoreductase
Chain: 5: PDB Molecule:nd5 subunit (nu5m);
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
10c6gcs4_
100.0 18
PDB header:oxidoreductase
Chain: 4: PDB Molecule:nd4 subunit (nu4m);
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
11c5ldwL_
100.0 19
PDB header:oxidoreductase
Chain: L: PDB Molecule:nadh-ubiquinone oxidoreductase chain 5;
PDBTitle: structure of mammalian respiratory complex i, class1
12c6cfwH_
100.0 24
PDB header:membrane protein
Chain: H: PDB Molecule:monovalent cation/h+ antiporter subunit d;
PDBTitle: cryoem structure of a respiratory membrane-bound hydrogenase
13c6g2jL_
100.0 18
PDB header:oxidoreductase
Chain: L: PDB Molecule:nadh-ubiquinone oxidoreductase chain 5;
PDBTitle: mouse mitochondrial complex i in the active state
14c4he8I_
100.0 25
PDB header:oxidoreductase
Chain: I: PDB Molecule:nadh-quinone oxidoreductase subunit 14;
PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 thermus thermophilus
15c5ldwM_
100.0 15
PDB header:oxidoreductase
Chain: M: PDB Molecule:nadh-ubiquinone oxidoreductase chain 4;
PDBTitle: structure of mammalian respiratory complex i, class1
16c6gcs2_
100.0 16
PDB header:oxidoreductase
Chain: 2: PDB Molecule:nd2 subunit (nu2m);
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
17c5xtdi_
100.0 15
PDB header:oxidoreductase/electron transport
Chain: I: PDB Molecule:nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit
PDBTitle: cryo-em structure of human respiratory complex i
18c6g2jN_
100.0 18
PDB header:oxidoreductase
Chain: N: PDB Molecule:nadh-ubiquinone oxidoreductase chain 2;
PDBTitle: mouse mitochondrial complex i in the active state
19c5ldwN_
100.0 17
PDB header:oxidoreductase
Chain: N: PDB Molecule:nadh-ubiquinone oxidoreductase chain 2;
PDBTitle: structure of mammalian respiratory complex i, class1
20c5lc5H_
71.6 12
PDB header:oxidoreductase
Chain: H: PDB Molecule:nadh-ubiquinone oxidoreductase chain 1;
PDBTitle: structure of mammalian respiratory complex i, class2
21c6cfwM_
not modelled 70.3 11
PDB header:membrane protein
Chain: M: PDB Molecule:mbh13 nadh dehydrogenase subunit;
PDBTitle: cryoem structure of a respiratory membrane-bound hydrogenase
22c6gcs1_
not modelled 69.9 14
PDB header:oxidoreductase
Chain: 1: PDB Molecule:nd1 subunit (nu1m);
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
23d1a6qa1
not modelled 45.9 23
Fold:Another 3-helical bundle
Superfamily:Protein serine/threonine phosphatase 2C, C-terminal domain
Family:Protein serine/threonine phosphatase 2C, C-terminal domain
24c6humA_
not modelled 42.1 14
PDB header:proton transport
Chain: A: PDB Molecule:nad(p)h-quinone oxidoreductase subunit 1;
PDBTitle: structure of the photosynthetic complex i from thermosynechococcus2 elongatus
25c2l3iA_
not modelled 37.8 33
PDB header:antimicrobial protein
Chain: A: PDB Molecule:aoxki4a, antimicrobial peptide in spider venom;
PDBTitle: oxki4a, spider derived antimicrobial peptide
26c6cfwG_
not modelled 37.0 18
PDB header:membrane protein
Chain: G: PDB Molecule:monovalent cation/h+ antiporter subunit c;
PDBTitle: cryoem structure of a respiratory membrane-bound hydrogenase
27c6gcsL_
not modelled 36.4 15
PDB header:oxidoreductase
Chain: L: PDB Molecule:nd4l subunit (nulm);
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
28c6g2jK_
not modelled 35.7 10
PDB header:oxidoreductase
Chain: K: PDB Molecule:nadh-ubiquinone oxidoreductase chain 4l;
PDBTitle: mouse mitochondrial complex i in the active state
29c4heaK_
not modelled 33.1 9
PDB header:oxidoreductase
Chain: K: PDB Molecule:nadh-quinone oxidoreductase subunit 11;
PDBTitle: crystal structure of the entire respiratory complex i from thermus2 thermophilus
30c4x84C_
not modelled 31.8 15
PDB header:isomerase
Chain: C: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-phosphate isomerase a from pseudomonas2 aeruginosa
31c5lnkm_
not modelled 31.5 13
PDB header:oxidoreductase
Chain: M: PDB Molecule:mitochondrial complex i, nd4 subunit;
PDBTitle: entire ovine respiratory complex i
32d1o8bb1
not modelled 30.5 14
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain
33c6humE_
not modelled 30.4 10
PDB header:proton transport
Chain: E: PDB Molecule:nad(p)h-quinone oxidoreductase subunit 4l;
PDBTitle: structure of the photosynthetic complex i from thermosynechococcus2 elongatus
34c3rkoK_
not modelled 28.6 7
PDB header:oxidoreductase
Chain: K: PDB Molecule:nadh-quinone oxidoreductase subunit k;
PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution
35c4kppA_
not modelled 23.8 11
PDB header:membrane protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of h+/ca2+ exchanger cax
36c3u7jA_
not modelled 20.2 16
PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-phosphate isomerase a from burkholderia2 thailandensis
37c5lc5b_
not modelled 18.2 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:nadh dehydrogenase [ubiquinone] iron-sulfur protein 7,
PDBTitle: structure of mammalian respiratory complex i, class2
38c5ldwb_
not modelled 18.2 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:nadh dehydrogenase [ubiquinone] iron-sulfur protein 7,
PDBTitle: structure of mammalian respiratory complex i, class1
39c5o31b_
not modelled 18.2 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:nadh dehydrogenase [ubiquinone] iron-sulfur protein 7,
PDBTitle: mitochondrial complex i in the deactive state
40c5ldxb_
not modelled 18.2 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:nadh dehydrogenase [ubiquinone] iron-sulfur protein 7,
PDBTitle: structure of mammalian respiratory complex i, class3.
41d1r6ea_
not modelled 16.7 43
Fold:SopE-like GEF domain
Superfamily:SopE-like GEF domain
Family:SopE-like GEF domain
42c3vrbG_
not modelled 16.3 15
PDB header:oxidoreductase/oxidoreductase inhibitor
Chain: G: PDB Molecule:cytochrome b-large subunit;
PDBTitle: mitochondrial rhodoquinol-fumarate reductase from the parasitic2 nematode ascaris suum with the specific inhibitor flutolanil and3 substrate fumarate
43c2kncA_
not modelled 16.2 9
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
44c5ldwK_
not modelled 16.0 11
PDB header:oxidoreductase
Chain: K: PDB Molecule:nadh-ubiquinone oxidoreductase chain 4l;
PDBTitle: structure of mammalian respiratory complex i, class1
45c5lc5K_
not modelled 16.0 11
PDB header:oxidoreductase
Chain: K: PDB Molecule:nadh-ubiquinone oxidoreductase chain 4l;
PDBTitle: structure of mammalian respiratory complex i, class2
46c4ddpA_
not modelled 15.5 36
PDB header:membrane protein
Chain: A: PDB Molecule:beclin-1;
PDBTitle: crystal structure of beclin 1 evolutionarily conserved domain(ecd)
47c6odmK_
not modelled 15.3 50
PDB header:viral protein
Chain: K: PDB Molecule:capsid vertex component 2;
PDBTitle: herpes simplex virus type 1 (hsv-1) portal vertex-adjacent2 capsid/catc, asymmetric unit
48c3vp7A_
not modelled 15.0 55
PDB header:protein transport
Chain: A: PDB Molecule:vacuolar protein sorting-associated protein 30;
PDBTitle: crystal structure of the beta-alpha repeated, autophagy-specific2 (bara) domain of vps30/atg6
49c3c25A_
not modelled 14.0 67
PDB header:hydrolase/dna
Chain: A: PDB Molecule:noti restriction endonuclease;
PDBTitle: crystal structure of noti restriction endonuclease bound to cognate2 dna
50c3r24A_
not modelled 13.4 44
PDB header:transferase, viral protein
Chain: A: PDB Molecule:2'-o-methyl transferase;
PDBTitle: crystal structure of nsp10/nsp16 complex of sars coronavirus" if2 possible
51c2jwaA_
not modelled 13.0 29
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: erbb2 transmembrane segment dimer spatial structure
52c2ks1A_
not modelled 13.0 29
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation
53d1s1qa_
not modelled 12.9 31
Fold:UBC-like
Superfamily:UBC-like
Family:UEV domain
54c4lnsA_
not modelled 12.7 13
PDB header:ligase
Chain: A: PDB Molecule:asparagine synthetase a;
PDBTitle: crystal structure of asparagine synthetase a (asna) from trypanosoma2 brucei
55c3na2C_
not modelled 12.7 33
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of protein of unknown function from mine drainage2 metagenome leptospirillum rubarum
56c5ynpA_
not modelled 12.6 22
PDB header:transferase
Chain: A: PDB Molecule:nsp16 protein;
PDBTitle: crystal structure of mers-cov nsp16/nsp10 complex bound to sinefungin2 and m7gpppa
57c3mesB_
not modelled 12.2 31
PDB header:transferase
Chain: B: PDB Molecule:choline kinase;
PDBTitle: crystal structure of choline kinase from cryptosporidium2 parvum iowa ii, cgd3_2030
58c5o60M_
not modelled 12.0 40
PDB header:ribosome
Chain: M: PDB Molecule:50s ribosomal protein l15;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
59c2ks1B_
not modelled 11.8 24
PDB header:transferase
Chain: B: PDB Molecule:epidermal growth factor receptor;
PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation
60c3qnqD_
not modelled 11.7 9
PDB header:membrane protein, transport protein
Chain: D: PDB Molecule:pts system, cellobiose-specific iic component;
PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system
61d1n9wa2
not modelled 11.6 50
Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
62d3dtub2
not modelled 11.6 16
Fold:Transmembrane helix hairpin
Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region
Family:Cytochrome c oxidase subunit II-like, transmembrane region
63c4j15A_
not modelled 11.6 50
PDB header:ligase
Chain: A: PDB Molecule:aspartate--trna ligase, cytoplasmic;
PDBTitle: crystal structure of human cytosolic aspartyl-trna synthetase, a2 component of multi-trna synthetase complex
64c1n9wA_
not modelled 11.4 50
PDB header:biosynthetic protein
Chain: A: PDB Molecule:aspartyl-trna synthetase 2;
PDBTitle: crystal structure of the non-discriminating and archaeal-2 type aspartyl-trna synthetase from thermus thermophilus
65c1r6rA_
not modelled 11.3 22
PDB header:viral protein
Chain: A: PDB Molecule:genome polyprotein;
PDBTitle: solution structure of dengue virus capsid protein reveals a2 new fold
66d1r6ra_
not modelled 11.3 22
Fold:Flavivirus capsid protein C
Superfamily:Flavivirus capsid protein C
Family:Flavivirus capsid protein C
67d1j4na_
not modelled 11.0 14
Fold:Aquaporin-like
Superfamily:Aquaporin-like
Family:Aquaporin-like
68c6humG_
not modelled 10.8 9
PDB header:proton transport
Chain: G: PDB Molecule:nadh dehydrogenase subunit 6;
PDBTitle: structure of the photosynthetic complex i from thermosynechococcus2 elongatus
69c2kwtA_
not modelled 10.8 17
PDB header:viral protein
Chain: A: PDB Molecule:protease ns2-3;
PDBTitle: solution structure of ns2 [27-59]
70c3bjuB_
not modelled 10.8 63
PDB header:ligase
Chain: B: PDB Molecule:lysyl-trna synthetase;
PDBTitle: crystal structure of tetrameric form of human lysyl-trna synthetase
71c1vw48_
not modelled 10.7 31
PDB header:ribosome
Chain: 8: PDB Molecule:54s ribosomal protein l13, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
72c4he8H_
not modelled 10.7 12
PDB header:oxidoreductase
Chain: H: PDB Molecule:nadh-quinone oxidoreductase subunit 8;
PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 thermus thermophilus
73c5elnC_
not modelled 10.6 50
PDB header:ligase
Chain: C: PDB Molecule:lysine--trna ligase;
PDBTitle: crystal structure of lysyl-trna synthetase from cryptosporidium parvum2 complexed with l-lysine
74c4o2dB_
not modelled 10.4 38
PDB header:ligase
Chain: B: PDB Molecule:aspartate--trna ligase;
PDBTitle: crystal structure of aspartyl-trna synthetase from mycobacterium2 smegmatis with bound aspartic acid
75c5vl1D_
not modelled 10.3 38
PDB header:ligase
Chain: D: PDB Molecule:lysine--trna ligase;
PDBTitle: crystal structure of lysyl-trna synthetase from mycobacterium ulcerans2 complexed with l-lysine
76c4ex5A_
not modelled 10.3 38
PDB header:transferase
Chain: A: PDB Molecule:lysine--trna ligase;
PDBTitle: crystal structure of lysyl-trna synthetase lysrs from burkholderia2 thailandensis bound to lysine
77c4k8nF_
not modelled 10.3 25
PDB header:lipid transport
Chain: F: PDB Molecule:glycolipid transfer protein domain-containing protein 1;
PDBTitle: crystal structure of human ceramide-1-phosphate transfer protein2 (cptp) in complex with 18:1 ceramide-1-phosphate (18:1-c1p)
78c5dfzD_
not modelled 10.3 35
PDB header:transferase
Chain: D: PDB Molecule:vacuolar protein sorting-associated protein 30;
PDBTitle: structure of vps34 complex ii from s. cerevisiae.
79d1swxa_
not modelled 10.3 25
Fold:Glycolipid transfer protein, GLTP
Superfamily:Glycolipid transfer protein, GLTP
Family:Glycolipid transfer protein, GLTP
80d1unca_
not modelled 10.3 11
Fold:VHP, Villin headpiece domain
Superfamily:VHP, Villin headpiece domain
Family:VHP, Villin headpiece domain
81c5hgqD_
not modelled 10.2 63
PDB header:ligase/ligase inhibitor
Chain: D: PDB Molecule:lysine--trna ligase;
PDBTitle: loa loa lysyl-trna synthetase in complex with cladosporin.
82c1b8aB_
not modelled 10.2 50
PDB header:ligase
Chain: B: PDB Molecule:protein (aspartyl-trna synthetase);
PDBTitle: aspartyl-trna synthetase
83c4upaA_
not modelled 10.2 25
PDB header:ligase
Chain: A: PDB Molecule:lysine--trna ligase;
PDBTitle: crystal structure of entamoeba histolytica lysyl-trna synthetase in2 complex with amppnp
84d1gzsb_
not modelled 10.1 48
Fold:SopE-like GEF domain
Superfamily:SopE-like GEF domain
Family:SopE-like GEF domain
85c5oqtC_
not modelled 10.1 24
PDB header:transport protein
Chain: C: PDB Molecule:uncharacterized protein ynem;
PDBTitle: crystal structure of a bacterial cationic amino acid transporter (cat)2 homologue
86c6f34C_
not modelled 10.1 24
PDB header:membrane protein
Chain: C: PDB Molecule:mgts;
PDBTitle: crystal structure of a bacterial cationic amino acid transporter (cat)2 homologue bound to arginine.
87c2pjmA_
not modelled 10.1 19
PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: structure of ribose 5-phosphate isomerase a from2 methanocaldococcus jannaschii
88d1yu8x1
not modelled 10.1 22
Fold:VHP, Villin headpiece domain
Superfamily:VHP, Villin headpiece domain
Family:VHP, Villin headpiece domain
89c1ceuA_
not modelled 10.0 17
PDB header:viral protein
Chain: A: PDB Molecule:protein (hiv-1 regulatory protein n-terminal
PDBTitle: nmr structure of the (1-51) n-terminal domain of the hiv-12 regulatory protein
90d1unda_
not modelled 10.0 11
Fold:VHP, Villin headpiece domain
Superfamily:VHP, Villin headpiece domain
Family:VHP, Villin headpiece domain
91c1wydB_
not modelled 9.9 63
PDB header:ligase
Chain: B: PDB Molecule:hypothetical aspartyl-trna synthetase;
PDBTitle: crystal structure of aspartyl-trna synthetase from sulfolobus tokodaii
92c3arcl_
not modelled 9.9 13
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution
93c4doyE_
not modelled 9.9 18
PDB header:oxidoreductase
Chain: E: PDB Molecule:dibenzothiophene desulfurization enzyme c;
PDBTitle: crystal structure of dibenzothiophene desulfurization enzyme c
94c2xgtB_
not modelled 9.8 25
PDB header:ligase
Chain: B: PDB Molecule:asparaginyl-trna synthetase, cytoplasmic;
PDBTitle: asparaginyl-trna synthetase from brugia malayi complexed2 with the sulphamoyl analogue of asparaginyl-adenylate
95c2i3fA_
not modelled 9.8 25
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:glycolipid transfer-like protein;
PDBTitle: crystal structure of a glycolipid transfer-like protein from galdieria2 sulphuraria
96c2re3A_
not modelled 9.7 36
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf1285 family protein (spo_0140) from2 silicibacter pomeroyi dss-3 at 2.50 a resolution
97c5tszA_
not modelled 9.7 31
PDB header:cell invasion
Chain: A: PDB Molecule:pv cell-traversal protein;
PDBTitle: crystal structure of plasmodium vivax celtos
98c4p6vE_
not modelled 9.7 10
PDB header:oxidoreductase
Chain: E: PDB Molecule:na(+)-translocating nadh-quinone reductase subunit e;
PDBTitle: crystal structure of the na+-translocating nadh: ubiquinone2 oxidoreductase from vibrio cholerae
99c5kdiA_
not modelled 9.7 25
PDB header:lipid transport
Chain: A: PDB Molecule:pleckstrin homology domain-containing family a member 8;
PDBTitle: how fapp2 selects simple glycosphingolipids using the gltp-fold

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Transmembrane helix prediction 

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