Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0202c_(mmpL11)_238392_241292
DateTue Jul 23 14:50:25 BST 2019
Unique Job ID2b76001d87b74d48
SequenceMMRLSRNLRR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:68.368 Y:88.858 Z:112.939
Model (left) based on template c6ajjA_
Top template information
PDB header:membrane protein, hydrolase
Chain: A: PDB Molecule:drug exporters of the rnd superfamily-like protein,
PDBTitle: crystal structure of mycolic acid transporter mmpl3 from mycobacterium2 smegmatis complexed with ica38
Confidence and coverage
Confidence:100.0% Coverage: 74%
716 residues ( 74% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6ajjA_
100.0 23
PDB header:membrane protein, hydrolase
Chain: A: PDB Molecule:drug exporters of the rnd superfamily-like protein,
PDBTitle: crystal structure of mycolic acid transporter mmpl3 from mycobacterium2 smegmatis complexed with ica38
2c5khnB_
100.0 19
PDB header:membrane protein
Chain: B: PDB Molecule:rnd transporter;
PDBTitle: crystal structures of the burkholderia multivorans hopanoid2 transporter hpnn
3c5lq3F_
100.0 15
PDB header:transport protein
Chain: F: PDB Molecule:cmeb;
PDBTitle: structures and transport dynamics of the campylobacter jejuni2 multidrug efflux pump cmeb
4c6dmoA_
100.0 14
PDB header:protein binding
Chain: A: PDB Molecule:protein patched homolog 1;
PDBTitle: cryo-em structure of human ptch1 with three mutations2 l282q/t500f/p504l
5c4mt1A_
100.0 15
PDB header:membrane protein, tranport protein
Chain: A: PDB Molecule:drug efflux protein;
PDBTitle: crystal structure of the neisseria gonorrhoeae mtrd inner membrane2 multidrug efflux pump
6c6owsB_
100.0 14
PDB header:membrane protein
Chain: B: PDB Molecule:efflux pump membrane transporter;
PDBTitle: cryo-em structure of an acinetobacter baumannii multidrug efflux pump
7c3jd8A_
100.0 15
PDB header:membrane protein
Chain: A: PDB Molecule:niemann-pick c1 protein;
PDBTitle: cryo-em structure of the full-length human npc1 at 4.4 angstrom
8c3k07A_
100.0 16
PDB header:transport protein
Chain: A: PDB Molecule:cation efflux system protein cusa;
PDBTitle: crystal structure of cusa
9c2v50A_
100.0 18
PDB header:membrane protein
Chain: A: PDB Molecule:multidrug resistance protein mexb;
PDBTitle: the missing part of the bacterial mexab-oprm system: structural2 determination of the multidrug exporter mexb
10c5xamA_
100.0 16
PDB header:membrane protein
Chain: A: PDB Molecule:protein translocase subunit secd;
PDBTitle: crystal structure of secdf in i form at 4 a resolution
11c3aqpB_
100.0 15
PDB header:membrane protein
Chain: B: PDB Molecule:probable secdf protein-export membrane protein;
PDBTitle: crystal structure of secdf, a translocon-associated membrane protein,2 from thermus thrmophilus
12c1oy8A_
100.0 19
PDB header:membrane protein
Chain: A: PDB Molecule:acriflavine resistance protein b;
PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump
13c4k0eA_
100.0 17
PDB header:transport protein
Chain: A: PDB Molecule:heavy metal cation tricomponent efflux pump znea(czca-
PDBTitle: x-ray crystal structure of a heavy metal efflux pump, crystal form ii
14c4k0eC_
100.0 15
PDB header:transport protein
Chain: C: PDB Molecule:heavy metal cation tricomponent efflux pump znea(czca-
PDBTitle: x-ray crystal structure of a heavy metal efflux pump, crystal form ii
15c6csxA_
100.0 19
PDB header:transport protein
Chain: A: PDB Molecule:multidrug efflux pump subunit acrb;
PDBTitle: single particles cryo-em structure of acrb d407a associated with lipid2 bilayer at 3.0 angstrom
16c5mg3F_
99.9 16
PDB header:chaperone
Chain: F: PDB Molecule:protein translocase subunit secf;
PDBTitle: em fitted model of bacterial holo-translocon
17c5mg3D_
99.9 18
PDB header:chaperone
Chain: D: PDB Molecule:protein translocase subunit secd;
PDBTitle: em fitted model of bacterial holo-translocon
18d1iwga7
99.9 19
Fold:Multidrug efflux transporter AcrB transmembrane domain
Superfamily:Multidrug efflux transporter AcrB transmembrane domain
Family:Multidrug efflux transporter AcrB transmembrane domain
19d1iwga8
99.9 12
Fold:Multidrug efflux transporter AcrB transmembrane domain
Superfamily:Multidrug efflux transporter AcrB transmembrane domain
Family:Multidrug efflux transporter AcrB transmembrane domain
20c4y0lA_
98.6 100
PDB header:membrane protein
Chain: A: PDB Molecule:putative membrane protein mmpl11;
PDBTitle: mycobacterial membrane protein mmpl11d2
21c2yvxD_
not modelled 81.0 10
PDB header:transport protein
Chain: D: PDB Molecule:mg2+ transporter mgte;
PDBTitle: crystal structure of magnesium transporter mgte
22c6gctA_
not modelled 79.1 20
PDB header:membrane protein
Chain: A: PDB Molecule:neutral amino acid transporter b(0);
PDBTitle: cryo-em structure of the human neutral amino acid transporter asct2
23d1iwga3
not modelled 70.2 11
Fold:Ferredoxin-like
Superfamily:Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Family:Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
24c2zxeG_
not modelled 52.3 23
PDB header:hydrolase/transport protein
Chain: G: PDB Molecule:phospholemman-like protein;
PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state
25c2cooA_
not modelled 43.5 28
PDB header:transferase
Chain: A: PDB Molecule:lipoamide acyltransferase component of branched-
PDBTitle: solution structure of the e3_binding domain of2 dihydrolipoamide branched chaintransacylase
26d1t4za_
not modelled 42.9 63
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:KaiB-like
27c4ky0B_
not modelled 42.3 12
PDB header:transport protein, membrane protein
Chain: B: PDB Molecule:proton/glutamate symporter, sdf family;
PDBTitle: crystal structure of a substrate-free glutamate transporter homologue2 from thermococcus kodakarensis
28c4p6vE_
not modelled 37.5 22
PDB header:oxidoreductase
Chain: E: PDB Molecule:na(+)-translocating nadh-quinone reductase subunit e;
PDBTitle: crystal structure of the na+-translocating nadh: ubiquinone2 oxidoreductase from vibrio cholerae
29c4ml9A_
not modelled 37.1 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of uncharacterized tim barrel protein with the2 conserved phosphate binding site fromsebaldella termitidis
30c6bcoD_
not modelled 36.4 15
PDB header:transport protein
Chain: D: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: cryo-em structure of trpm4 in atp bound state with short coiled coil2 at 2.9 angstrom resolution
31c1zwvA_
not modelled 35.8 29
PDB header:transferase
Chain: A: PDB Molecule:lipoamide acyltransferase component of branched-
PDBTitle: solution structure of the subunit binding domain (hbsbd) of2 the human mitochondrial branched-chain alpha-ketoacid3 dehydrogenase
32c3d0fA_
not modelled 33.6 14
PDB header:transferase
Chain: A: PDB Molecule:penicillin-binding 1 transmembrane protein mrca;
PDBTitle: structure of the big_1156.2 domain of putative penicillin-binding2 protein mrca from nitrosomonas europaea atcc 19718
33c2eq8C_
not modelled 31.5 31
PDB header:oxidoreductase
Chain: C: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide
PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdp
34c6b2zf_
not modelled 29.1 27
PDB header:membrane protein
Chain: F: PDB Molecule:atp synthase subunit c, mitochondrial;
PDBTitle: cryo-em structure of the dimeric fo region of yeast mitochondrial atp2 synthase
35c6b8ht_
not modelled 28.6 27
PDB header:membrane protein
Chain: T: PDB Molecule:atp synthase subunit 9, mitochondrial;
PDBTitle: mosaic model of yeast mitochondrial atp synthase monomer
36c5et0B_
not modelled 28.6 56
PDB header:protein binding/motor protein
Chain: B: PDB Molecule:myosin-iiib;
PDBTitle: crystal structure of myo3b-arb2 in complex with espin1-ar
37c5et0D_
not modelled 28.6 56
PDB header:protein binding/motor protein
Chain: D: PDB Molecule:myosin-iiib;
PDBTitle: crystal structure of myo3b-arb2 in complex with espin1-ar
38c1w3dA_
not modelled 28.1 21
PDB header:transferase
Chain: A: PDB Molecule:dihydrolipoyllysine-residue acetyltransferase component of
PDBTitle: nmr structure of the peripheral-subunit binding domain of bacillus2 stearothermophilus e2p
39c2mwiA_
not modelled 27.6 29
PDB header:protein binding
Chain: A: PDB Molecule:deoxynucleotidyltransferase terminal-interacting protein 1;
PDBTitle: the structure of the carboxy-terminal domain of dnttip1
40c6bcqB_
not modelled 24.4 15
PDB header:transport protein
Chain: B: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: cryo-em structure of trpm4 in atp bound state with long coiled coil at2 3.3 angstrom resolution
41c5n9yB_
not modelled 21.6 16
PDB header:membrane protein
Chain: B: PDB Molecule:zinc transport protein zntb;
PDBTitle: the full-length structure of zntb
42d2yvxa3
not modelled 20.3 10
Fold:MgtE membrane domain-like
Superfamily:MgtE membrane domain-like
Family:MgtE membrane domain-like
43c2gp4A_
not modelled 19.6 17
PDB header:lyase
Chain: A: PDB Molecule:6-phosphogluconate dehydratase;
PDBTitle: structure of [fes]cluster-free apo form of 6-phosphogluconate2 dehydratase from shewanella oneidensis
44d1w85i_
not modelled 18.3 21
Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
45c4ev6E_
not modelled 18.1 10
PDB header:metal transport
Chain: E: PDB Molecule:magnesium transport protein cora;
PDBTitle: the complete structure of cora magnesium transporter from2 methanocaldococcus jannaschii
46c1w4kA_
not modelled 17.3 26
PDB header:transferase
Chain: A: PDB Molecule:pyruvate dehydrogenase e2;
PDBTitle: peripheral-subunit binding domains from mesophilic,2 thermophilic, and hyperthermophilic bacteria fold by3 ultrafast, apparently two-state transitions
47c6nr3B_
not modelled 17.1 11
PDB header:transport protein
Chain: B: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: cryo-em structure of the trpm8 ion channel in complex with high2 occupancy icilin, pi(4,5)p2, and calcium
48c6nr3D_
not modelled 17.1 11
PDB header:transport protein
Chain: D: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: cryo-em structure of the trpm8 ion channel in complex with high2 occupancy icilin, pi(4,5)p2, and calcium
49c6nr3A_
not modelled 17.1 11
PDB header:transport protein
Chain: A: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: cryo-em structure of the trpm8 ion channel in complex with high2 occupancy icilin, pi(4,5)p2, and calcium
50c6nr3C_
not modelled 17.1 11
PDB header:transport protein
Chain: C: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: cryo-em structure of the trpm8 ion channel in complex with high2 occupancy icilin, pi(4,5)p2, and calcium
51d2cyua1
not modelled 16.2 19
Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
52d1wkta_
not modelled 15.9 50
Fold:gamma-Crystallin-like
Superfamily:gamma-Crystallin-like
Family:Yeast killer toxin
53c2eq7C_
not modelled 15.9 23
PDB header:oxidoreductase
Chain: C: PDB Molecule:2-oxoglutarate dehydrogenase e2 component;
PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdo
54c5ibyA_
not modelled 14.9 17
PDB header:ligase,transferase
Chain: A: PDB Molecule:lipoate--protein ligase;
PDBTitle: crystal structure of enterococcus faecalis lipoate-protein ligase a2 (lpla-2) in complex with lipoic acid
55d2eiaa1
not modelled 14.0 17
Fold:Acyl carrier protein-like
Superfamily:Retrovirus capsid dimerization domain-like
Family:Retrovirus capsid protein C-terminal domain
56c3dv0I_
not modelled 13.9 21
PDB header:oxidoreductase/transferase
Chain: I: PDB Molecule:dihydrolipoyllysine-residue acetyltransferase
PDBTitle: snapshots of catalysis in the e1 subunit of the pyruvate2 dehydrogenase multi-enzyme complex
57c2eq9C_
not modelled 13.6 21
PDB header:oxidoreductase
Chain: C: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide
PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdb
58c3lrcC_
not modelled 12.7 11
PDB header:transport protein
Chain: C: PDB Molecule:arginine/agmatine antiporter;
PDBTitle: structure of e. coli adic (p1)
59c4qoyE_
not modelled 12.3 29
PDB header:oxidoreductase
Chain: E: PDB Molecule:pyruvate dehydrogenase (dihydrolipoyltransacetylase
PDBTitle: novel binding motif and new flexibility revealed by structural2 analysis of a pyruvate dehydrogenase-dihydrolipoyl acetyltransferase3 sub-complex from the escherichia coli pyruvate dehydrogenase multi-4 enzyme complex
60d1iyxa1
not modelled 12.2 17
Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:Enolase
61c6hwhb_
not modelled 12.2 16
PDB header:electron transport
Chain: B: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
62d1f61a_
not modelled 12.0 28
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like
63c2l81A_
not modelled 11.9 12
PDB header:cell adhesion
Chain: A: PDB Molecule:enhancer of filamentation 1;
PDBTitle: solution nmr structure of the serine-rich domain of hef1 (enhancer of2 filamentation 1) from homo sapiens, northeast structural genomics3 consortium target hr5554a
64c5wujB_
not modelled 11.8 20
PDB header:motor protein
Chain: B: PDB Molecule:flagellar motor switch protein flig;
PDBTitle: crystal structure of flif-flig complex from h. pylori
65c4n71A_
not modelled 11.7 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:predicted hd phosphohydrolase phnz;
PDBTitle: x-ray crystal structure of 2-amino-1-hydroxyethylphosphonate-bound2 phnz
66c2na9A_
not modelled 11.7 7
PDB header:signaling protein
Chain: A: PDB Molecule:cytokine receptor common subunit beta;
PDBTitle: transmembrane structure of the p441a mutant of the cytokine receptor2 common subunit beta
67c2na8A_
not modelled 11.5 7
PDB header:membrane protein
Chain: A: PDB Molecule:cytokine receptor common subunit beta;
PDBTitle: transmembrane structure of the cytokine receptor common subunit beta
68d1xpua3
not modelled 11.4 13
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
69d1igna2
not modelled 11.1 33
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:DNA-binding domain of rap1
70d2qtva4
not modelled 11.0 26
Fold:Gelsolin-like
Superfamily:C-terminal, gelsolin-like domain of Sec23/24
Family:C-terminal, gelsolin-like domain of Sec23/24
71c4aqzA_
not modelled 11.0 27
PDB header:transport protein
Chain: A: PDB Molecule:type iv pilus biogenesis and competence protein pilq;
PDBTitle: b2 domain of neisseria meningitidis pilus assembly protein pilq
72c4w8oA_
not modelled 10.9 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:luciferase-like enzymeamp-coa-ligase;
PDBTitle: structure of the luciferase-like enzyme from the nonluminescent2 zophobas morio mealworm
73d2qfia1
not modelled 10.9 12
Fold:Alpha-lytic protease prodomain-like
Superfamily:Cation efflux protein cytoplasmic domain-like
Family:Cation efflux protein cytoplasmic domain-like
74c6bpqA_
not modelled 10.8 11
PDB header:transport protein
Chain: A: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: structure of the cold- and menthol-sensing ion channel trpm8
75c6bpqB_
not modelled 10.8 11
PDB header:transport protein
Chain: B: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: structure of the cold- and menthol-sensing ion channel trpm8
76c6bpqC_
not modelled 10.8 11
PDB header:transport protein
Chain: C: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: structure of the cold- and menthol-sensing ion channel trpm8
77c6bpqD_
not modelled 10.8 11
PDB header:transport protein
Chain: D: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: structure of the cold- and menthol-sensing ion channel trpm8
78c3i4eA_
not modelled 10.8 30
PDB header:lyase
Chain: A: PDB Molecule:isocitrate lyase;
PDBTitle: crystal structure of isocitrate lyase from burkholderia2 pseudomallei
79c5dckA_
not modelled 10.8 25
PDB header:viral protein
Chain: A: PDB Molecule:capsid c-terminal domain;
PDBTitle: crystal structure of fiv capsid c-terminal domain
80c5ij6A_
not modelled 10.6 19
PDB header:ligase,transferase
Chain: A: PDB Molecule:lipoate--protein ligase;
PDBTitle: crystal structure of enterococcus faecalis lipoate-protein ligase a2 (lpla-1) in complex with lipoic acid
81c1bajA_
not modelled 10.3 29
PDB header:viral protein
Chain: A: PDB Molecule:gag polyprotein;
PDBTitle: hiv-1 capsid protein c-terminal fragment plus gag p2 domain
82c5zvs2_
not modelled 10.3 33
PDB header:viral protein
Chain: 2: PDB Molecule:vp2;
PDBTitle: structure of rna polymerase complex and genome within a dsrna virus2 provides insights into the mechanisms of transcription and assembly
83c2jysA_
not modelled 10.2 18
PDB header:hydrolase
Chain: A: PDB Molecule:protease/reverse transcriptase;
PDBTitle: solution structure of simian foamy virus (mac) protease
84d1hl9a1
not modelled 10.2 23
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:Putative alpha-L-fucosidase C-terminal domain
85c5tseA_
not modelled 10.1 23
PDB header:lipid binding protein
Chain: A: PDB Molecule:lps-assembly lipoprotein lpte;
PDBTitle: 2.35 angstrom crystal structure minor lipoprotein from acinetobacter2 baumannii.
86c4mcjC_
not modelled 10.0 18
PDB header:transferase
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative nucleoside deoxyribosyltransferase2 (bdi_0649) from parabacteroides distasonis atcc 8503 at 2.40 a3 resolution
87c2e5aA_
not modelled 9.9 31
PDB header:ligase
Chain: A: PDB Molecule:lipoyltransferase 1;
PDBTitle: crystal structure of bovine lipoyltransferase in complex2 with lipoyl-amp
88c2yy0D_
not modelled 9.9 8
PDB header:transcription
Chain: D: PDB Molecule:c-myc-binding protein;
PDBTitle: crystal structure of ms0802, c-myc-1 binding protein domain2 from homo sapiens
89c2plxB_
not modelled 9.9 38
PDB header:hydrolase
Chain: B: PDB Molecule:peptide inhibitor;
PDBTitle: trypsin complexed to a synthetic peptide from veronica hederifolia
90c3sohB_
not modelled 9.8 20
PDB header:motor protein
Chain: B: PDB Molecule:flagellar motor switch protein flig;
PDBTitle: architecture of the flagellar rotor
91d1q92a_
not modelled 9.6 11
Fold:HAD-like
Superfamily:HAD-like
Family:5'(3')-deoxyribonucleotidase (dNT-2)
92c2bbjB_
not modelled 9.5 19
PDB header:metal transport/membrane protein
Chain: B: PDB Molecule:divalent cation transport-related protein;
PDBTitle: crystal structure of the cora mg2+ transporter
93d1ut7a_
not modelled 9.2 20
Fold:NAC domain
Superfamily:NAC domain
Family:NAC domain
94c3j1zP_
not modelled 9.1 16
PDB header:metal transport
Chain: P: PDB Molecule:cation efflux family protein;
PDBTitle: inward-facing conformation of the zinc transporter yiip revealed by2 cryo-electron microscopy
95d1bala_
not modelled 9.0 16
Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
96c2v9vA_
not modelled 9.0 18
PDB header:transcription
Chain: A: PDB Molecule:selenocysteine-specific elongation factor;
PDBTitle: crystal structure of moorella thermoacetica selb(377-511)
97c3h6qA_
not modelled 8.9 38
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:macrocypin 1a;
PDBTitle: macrocypin, a beta-trefoil cysteine protease inhibitor
98c4b1xM_
not modelled 8.9 32
PDB header:structural protein
Chain: M: PDB Molecule:phosphatase and actin regulator 1;
PDBTitle: structure of the phactr1 rpel-2 bound to g-actin
99d2fyma1
not modelled 8.8 21
Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:Enolase

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Transmembrane helix prediction 

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