Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0349_(-)_418949_419608
DateTue Jul 23 14:50:42 BST 2019
Unique Job ID0eb9ccc12b748bd0
SequenceVPELETPDDP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:36.069 Y:24.092 Z:19.125
Model (left) based on template c5abvF_
Top template information
PDB header:translation
Chain: F: PDB Molecule:gh11071p;
PDBTitle: complex of d. melanogaster eif4e with the 4e-binding2 protein mextli
Confidence and coverage
Confidence: 32.6% Coverage: 12%
27 residues ( 12% of your sequence) have been modelled with 32.6% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5abvF_
32.6 30
PDB header:translation
Chain: F: PDB Molecule:gh11071p;
PDBTitle: complex of d. melanogaster eif4e with the 4e-binding2 protein mextli
2c5wygC_
23.5 17
PDB header:hydrolase
Chain: C: PDB Molecule:probable endoribonuclease mazf7;
PDBTitle: the crystal structure of the apo form of mtb mazf
3c1sfeA_
20.9 8
PDB header:dna-binding protein
Chain: A: PDB Molecule:ada o6-methylguanine-dna methyltransferase;
PDBTitle: ada o6-methylguanine-dna methyltransferase from escherichia coli
4d1wxma1
16.9 32
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ras-binding domain, RBD
5d1o12a1
14.3 35
Fold:Composite domain of metallo-dependent hydrolases
Superfamily:Composite domain of metallo-dependent hydrolases
Family:N-acetylglucosamine-6-phosphate deacetylase, NagA
6c4ng2E_
13.5 24
PDB header:transcription regulator
Chain: E: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of lasr lbd-qsla complex from pseudomonas aeruginosa
7c6ajrA_
12.6 21
PDB header:dna binding protein
Chain: A: PDB Molecule:uracil dna glycosylase superfamily protein;
PDBTitle: complex form of uracil dna glycosylase x and uracil
8c3g0kA_
12.5 45
PDB header:ca-binding protein
Chain: A: PDB Molecule:putative membrane protein;
PDBTitle: crystal structure of a protein of unknown function with a cystatin-2 like fold (saro_2880) from novosphingobium aromaticivorans dsm at3 1.30 a resolution
9c1t39A_
12.4 28
PDB header:transferase/dna
Chain: A: PDB Molecule:methylated-dna--protein-cysteine
PDBTitle: human o6-alkylguanine-dna alkyltransferase covalently2 crosslinked to dna
10c4bhcA_
12.4 10
PDB header:transferase
Chain: A: PDB Molecule:methylated-dna--protein-cysteine methyltransferase;
PDBTitle: crystal structure of the m. tuberculosis o6-methylguanine2 methyltransferase r37l variant
11c3dmqA_
12.3 19
PDB header:hydrolase
Chain: A: PDB Molecule:rna polymerase-associated protein rapa;
PDBTitle: crystal structure of rapa, a swi2/snf2 protein that recycles rna2 polymerase during transcription
12c2pnmA_
12.2 55
PDB header:hydrolase
Chain: A: PDB Molecule:protease vp4;
PDBTitle: crystal structure of vp4 protease from infectious pancreatic necrosis2 virus (ipnv) in space group p6122
13c3hrqB_
11.9 19
PDB header:biosynthetic protein
Chain: B: PDB Molecule:aflatoxin biosynthesis polyketide synthase;
PDBTitle: the product template domain from pksa with palmitate bound
14c2v7sA_
11.6 23
PDB header:unknown function
Chain: A: PDB Molecule:probable conserved lipoprotein lppa;
PDBTitle: crystal structure of the putative lipoprotein lppa from2 mycobacterium tuberculosis
15c5vwxD_
11.3 36
PDB header:apoptosis
Chain: D: PDB Molecule:bcl-2-like protein 11;
PDBTitle: bak core latch dimer in complex with bim-h0-h3glt
16c5vwxB_
11.3 36
PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-like protein 11;
PDBTitle: bak core latch dimer in complex with bim-h0-h3glt
17c3j38V_
11.1 19
PDB header:ribosome
Chain: V: PDB Molecule:40s ribosomal protein s21;
PDBTitle: structure of the d. melanogaster 40s ribosomal proteins
18c5jnbG_
11.0 64
PDB header:transferase
Chain: G: PDB Molecule:rnp (rrm rna binding domain) containing;
PDBTitle: structure of gld-2/rnp-8 complex
19c3qx3B_
10.6 29
PDB header:isomerase/dna/isomerase inhibitor
Chain: B: PDB Molecule:dna topoisomerase 2-beta;
PDBTitle: human topoisomerase iibeta in complex with dna and etoposide
20c3l4gL_
10.3 20
PDB header:ligase
Chain: L: PDB Molecule:phenylalanyl-trna synthetase beta chain;
PDBTitle: crystal structure of homo sapiens cytoplasmic phenylalanyl-trna2 synthetase
21d1sfea1
not modelled 10.3 8
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Methylated DNA-protein cysteine methyltransferase, C-terminal domain
Family:Methylated DNA-protein cysteine methyltransferase, C-terminal domain
22c5yhhA_
not modelled 10.2 38
PDB header:oxidoreductase
Chain: A: PDB Molecule:uncharacterized conserved protein yiim;
PDBTitle: crystal structure of yiim from geobacillus stearothermophilus
23c5jnbE_
not modelled 9.9 64
PDB header:transferase
Chain: E: PDB Molecule:rnp (rrm rna binding domain) containing;
PDBTitle: structure of gld-2/rnp-8 complex
24c3izbT_
not modelled 9.6 22
PDB header:ribosome
Chain: T: PDB Molecule:40s ribosomal protein rps21 (s21e);
PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
25c4xhcB_
not modelled 9.6 34
PDB header:hydrolase
Chain: B: PDB Molecule:alpha-l-rhamnosidase;
PDBTitle: rhamnosidase from klebsiella oxytoca with rhamnose bound
26c4zyeA_
not modelled 9.6 16
PDB header:transferase
Chain: A: PDB Molecule:methylated-dna--protein-cysteine methyltransferase;
PDBTitle: crystal structure of sulfolobus solfataricus o6-methylguanine2 methyltransferase
27c1wrjA_
not modelled 9.3 33
PDB header:transferase
Chain: A: PDB Molecule:methylated-dna--protein-cysteine
PDBTitle: crystal structure of o6-methylguanine methyltransferase2 from sulfolobus tokodaii
28c2k87A_
not modelled 9.0 20
PDB header:viral protein, rna binding protein
Chain: A: PDB Molecule:non-structural protein 3 of replicase polyprotein 1a;
PDBTitle: nmr structure of a putative rna binding protein (sars1) from sars2 coronavirus
29c2xznZ_
not modelled 8.8 19
PDB header:ribosome
Chain: Z: PDB Molecule:rps21e;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
30d1o65a_
not modelled 8.7 36
Fold:PK beta-barrel domain-like
Superfamily:PK beta-barrel domain-like
Family:MOSC (MOCO sulphurase C-terminal) domain
31c2g7hA_
not modelled 8.6 14
PDB header:transferase
Chain: A: PDB Molecule:methylated-dna--protein-cysteine
PDBTitle: structure of an o6-methylguanine dna methyltransferase from2 methanococcus jannaschii (mj1529)
32d2igsa1
not modelled 8.2 55
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:PA2222-like
33c3iz6T_
not modelled 8.2 25
PDB header:ribosome
Chain: T: PDB Molecule:40s ribosomal protein s21 (s21e);
PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
34c2qzbB_
not modelled 8.1 67
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein yfey;
PDBTitle: crystal structure of the uncharacterized protein yfey from escherichia2 coli
35c1mgtA_
not modelled 8.0 27
PDB header:transferase
Chain: A: PDB Molecule:protein (o6-methylguanine-dna methyltransferase);
PDBTitle: crystal structure of o6-methylguanine-dna methyltransferase from2 hyperthermophilic archaeon pyrococcus kodakaraensis strain kod1
36c3fh1A_
not modelled 7.8 27
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized ntf2-like protein;
PDBTitle: crystal structure of a ntf2-like protein of unknown function (mll8193)2 from mesorhizobium loti at 1.60 a resolution
37c3zeyR_
not modelled 7.7 42
PDB header:ribosome
Chain: R: PDB Molecule:40s ribosomal protein s21, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
38c6fviA_
not modelled 7.5 50
PDB header:cell cycle
Chain: A: PDB Molecule:centrosomal protein of 192 kda;
PDBTitle: ash / papd-like domain of human cep192 (papd-like domain 7)
39c5a9qB_
not modelled 7.3 13
PDB header:transport protein
Chain: B: PDB Molecule:nuclear pore complex protein nup155;
PDBTitle: human nuclear pore complex
40c2wl2B_
not modelled 7.1 43
PDB header:isomerase
Chain: B: PDB Molecule:dna gyrase subunit a;
PDBTitle: crystal structure of n-terminal domain of gyra with the2 antibiotic simocyclinone d8
41d1nosa_
not modelled 7.1 29
Fold:Nitric oxide (NO) synthase oxygenase domain
Superfamily:Nitric oxide (NO) synthase oxygenase domain
Family:Nitric oxide (NO) synthase oxygenase domain
42d1a21a2
not modelled 7.1 15
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Fibronectin type III
Family:Fibronectin type III
43d2cg7a2
not modelled 7.0 55
Fold:FnI-like domain
Superfamily:FnI-like domain
Family:Fibronectin type I module
44c4j7bC_
not modelled 6.9 20
PDB header:transferase
Chain: C: PDB Molecule:205 kda microtubule-associated protein;
PDBTitle: crystal structure of polo-like kinase 1
45c4j7bF_
not modelled 6.9 20
PDB header:transferase
Chain: F: PDB Molecule:205 kda microtubule-associated protein;
PDBTitle: crystal structure of polo-like kinase 1
46c5oqqD_
not modelled 6.9 40
PDB header:cell cycle
Chain: D: PDB Molecule:condensin complex subunit 2;
PDBTitle: crystal structure of the s. cerevisiae condensin ycg1-brn1 subcomplex
47c5xyiV_
not modelled 6.8 19
PDB header:ribosome
Chain: V: PDB Molecule:40s ribosomal protein s21;
PDBTitle: small subunit of trichomonas vaginalis ribosome
48c3rafA_
not modelled 6.7 36
PDB header:isomerase/dna/antibiotic
Chain: A: PDB Molecule:dna topoisomerase 4 subunit a;
PDBTitle: quinazolinedione-dna cleavage complex of type iv topoisomerase from s.2 pneumoniae
49d1vk8a_
not modelled 6.6 12
Fold:Ferredoxin-like
Superfamily:MTH1187/YkoF-like
Family:MTH1187-like
50d1pk8a1
not modelled 6.5 24
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:Synapsin domain
51c4hedA_
not modelled 6.5 67
PDB header:signaling protein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: zebrafish chemokine cxl1
52d2csua2
not modelled 6.4 22
Fold:Flavodoxin-like
Superfamily:Succinyl-CoA synthetase domains
Family:Succinyl-CoA synthetase domains
53c3ifzA_
not modelled 6.4 36
PDB header:isomerase
Chain: A: PDB Molecule:dna gyrase subunit a;
PDBTitle: crystal structure of the first part of the mycobacterium tuberculosis2 dna gyrase reaction core: the breakage and reunion domain at 2.7 a3 resolution
54c2inrA_
not modelled 6.3 29
PDB header:isomerase
Chain: A: PDB Molecule:dna topoisomerase 4 subunit a;
PDBTitle: crystal structure of a 59 kda fragment of topoisomerase iv subunit a2 (grla) from staphylococcus aureus
55c3uepB_
not modelled 6.3 19
PDB header:protein transport
Chain: B: PDB Molecule:yscq-c, type iii secretion protein;
PDBTitle: crystal structure of yscq-c from yersinia pseudotuberculosis
56c3smaD_
not modelled 6.3 17
PDB header:transferase
Chain: D: PDB Molecule:frbf;
PDBTitle: a new n-acetyltransferase fold in the structure and mechanism of the2 phosphonate biosynthetic enzyme frbf
57c3r0bC_
not modelled 6.1 55
PDB header:hydrolase
Chain: C: PDB Molecule:yav vp4;
PDBTitle: crystal structure of yellowtail ascites virus vp4 protease with a2 wild-type active site reveals acyl-enzyme complexes and product3 complexes.
58c4iikA_
not modelled 6.0 40
PDB header:hydrolase
Chain: A: PDB Molecule:adenosine monophosphate-protein hydrolase sidd;
PDBTitle: legionella pneumophila effector
59d1qnta1
not modelled 6.0 27
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Methylated DNA-protein cysteine methyltransferase, C-terminal domain
Family:Methylated DNA-protein cysteine methyltransferase, C-terminal domain
60c3gx4X_
not modelled 6.0 36
PDB header:dna binding protein/dna
Chain: X: PDB Molecule:alkyltransferase-like protein 1;
PDBTitle: crystal structure analysis of s. pombe atl in complex with dna
61c2kxqB_
not modelled 5.8 58
PDB header:protein binding
Chain: B: PDB Molecule:smad7 py motif containing peptide;
PDBTitle: solution structure of smurf2 ww2 and ww3 bound to smad7 py motif2 containing peptide
62c2djyB_
not modelled 5.8 58
PDB header:ligase/signaling protein
Chain: B: PDB Molecule:mothers against decapentaplegic homolog 7;
PDBTitle: solution structure of smurf2 ww3 domain-smad7 py peptide2 complex
63d1s28a_
not modelled 5.8 18
Fold:Secretion chaperone-like
Superfamily:Type III secretory system chaperone-like
Family:Type III secretory system chaperone
64c2akwB_
not modelled 5.7 41
PDB header:ligase
Chain: B: PDB Molecule:phenylalanyl-trna synthetase beta chain;
PDBTitle: crystal structure of t.thermophilus phenylalanyl-trna synthetase2 complexed with p-cl-phenylalanine
65d1ylxa1
not modelled 5.6 29
Fold:N domain of copper amine oxidase-like
Superfamily:GK1464-like
Family:GK1464-like
66d2ix0a3
not modelled 5.6 48
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
67c5lc5a_
not modelled 5.6 56
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh-ubiquinone oxidoreductase chain 3;
PDBTitle: structure of mammalian respiratory complex i, class2
68d1kkea1
not modelled 5.6 67
Fold:Triple beta-spiral
Superfamily:Fibre shaft of virus attachment proteins
Family:Reovirus attachment protein sigma 1
69c5hk3B_
not modelled 5.5 16
PDB header:hydrolase/dna
Chain: B: PDB Molecule:endoribonuclease mazf6;
PDBTitle: crystal structure of m. tuberculosis mazf-mt3 t52d-f62d mutant in2 complex with dna
70c6eg3A_
not modelled 5.5 28
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:maltose/maltodextrin-binding periplasmic protein,probable
PDBTitle: crystal structure of human brm in complex with compound 15
71d1ab4a_
not modelled 5.5 43
Fold:Type II DNA topoisomerase
Superfamily:Type II DNA topoisomerase
Family:Type II DNA topoisomerase
72c3ue9A_
not modelled 5.4 32
PDB header:ligase
Chain: A: PDB Molecule:adenylosuccinate synthetase;
PDBTitle: crystal structure of adenylosuccinate synthetase (ampsase) (pura) from2 burkholderia thailandensis
73c3hiuB_
not modelled 5.4 30
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: the crystal structure of protein (xcc3681) from xanthomonas2 campestris pv. campestris str. atcc 33913
74c3e5aB_
not modelled 5.4 50
PDB header:transferase
Chain: B: PDB Molecule:targeting protein for xklp2;
PDBTitle: crystal structure of aurora a in complex with vx-680 and tpx2
75d2nyga1
not modelled 5.3 16
Fold:TTHA0583/YokD-like
Superfamily:TTHA0583/YokD-like
Family:Aminoglycoside 3-N-acetyltransferase-like
76c3mwyW_
not modelled 5.3 26
PDB header:hydrolase
Chain: W: PDB Molecule:chromo domain-containing protein 1;
PDBTitle: crystal structure of the chromodomain-atpase portion of the yeast chd12 chromatin remodeler
77c5hzrA_
not modelled 5.3 26
PDB header:transcription
Chain: A: PDB Molecule:snf2-family atp dependent chromatin remodeling factor like
PDBTitle: crystal structure of mtsnf2
78d1jjcb2
not modelled 5.2 40
Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:Domains B1 and B5 of PheRS-beta, PheT
79c4ll8A_
not modelled 5.2 18
PDB header:motor protein/transport protein
Chain: A: PDB Molecule:myosin-4;
PDBTitle: complex of carboxy terminal domain of myo4p and she3p middle fragment
80c4z2cA_
not modelled 5.2 43
PDB header:isomerase
Chain: A: PDB Molecule:dna gyrase subunit a;
PDBTitle: quinolone(moxifloxacin)-dna cleavage complex of gyrase from s.2 pneumoniae
81d1z63a1
not modelled 5.1 26
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain

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