Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0593_(lprL)_692027_693235
DateFri Jul 26 01:50:15 BST 2019
Unique Job ID3e13662818e567b4
SequenceVRCGVSAGSA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:43.850 Y:42.835 Z:69.163
Model (left) based on template c6ic4C_
Top template information
PDB header:protein transport
Chain: C: PDB Molecule:toluene tolerance efflux transporter (abc superfamily,
PDBTitle: cryo-em structure of the a. baumannii mla complex at 8.7 a resolution
Confidence and coverage
Confidence: 99.9% Coverage: 33%
132 residues ( 33% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6ic4C_



99.9 24
PDB header:protein transport
Chain: C: PDB Molecule:toluene tolerance efflux transporter (abc superfamily,
PDBTitle: cryo-em structure of the a. baumannii mla complex at 8.7 a resolution
2c5uw8C_



99.8 28
PDB header:transport protein
Chain: C: PDB Molecule:probable phospholipid abc transporter-binding protein mlad;
PDBTitle: structure of e. coli mce protein mlad, core mce domain
3c5uvnB_



99.3 17
PDB header:transport protein
Chain: B: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
4c5uvnF_



99.3 17
PDB header:transport protein
Chain: F: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
5c5uvnA_



99.3 17
PDB header:transport protein
Chain: A: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
6c5uvnE_



99.3 17
PDB header:transport protein
Chain: E: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
7c5uvnC_



99.3 17
PDB header:transport protein
Chain: C: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
8c5uvnD_



99.3 17
PDB header:transport protein
Chain: D: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
9c1qu7A_



87.5 13
PDB header:signaling protein
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein i;
PDBTitle: four helical-bundle structure of the cytoplasmic domain of a serine2 chemotaxis receptor
10c2d4yA_



86.0 16
PDB header:structural protein
Chain: A: PDB Molecule:flagellar hook-associated protein 1;
PDBTitle: crystal structure of a 49k fragment of hap1 (flgk)
11c5u0pU_



82.3 10
PDB header:transcription
Chain: U: PDB Molecule:mediator complex subunit 21;
PDBTitle: cryo-em structure of the transcriptional mediator
12c2qihA_



82.0 4
PDB header:cell adhesion
Chain: A: PDB Molecule:protein uspa1;
PDBTitle: crystal structure of 527-665 fragment of uspa1 protein from moraxella2 catarrhalis
13c3zx6A_



79.6 15
PDB header:signaling
Chain: A: PDB Molecule:hamp, methyl-accepting chemotaxis protein i;
PDBTitle: structure of hamp(af1503)-tsr fusion - hamp (a291v) mutant
14c2j5uB_



75.7 14
PDB header:cell shape regulation
Chain: B: PDB Molecule:mrec protein;
PDBTitle: mrec lysteria monocytogenes
15c2ch7A_



75.7 10
PDB header:chemotaxis
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein;
PDBTitle: crystal structure of the cytoplasmic domain of a bacterial2 chemoreceptor from thermotoga maritima
16c3g67A_



75.2 14
PDB header:signaling protein
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein;
PDBTitle: crystal structure of a soluble chemoreceptor from thermotoga2 maritima
17c5xbjA_



73.9 13
PDB header:biosynthetic protein
Chain: A: PDB Molecule:flagellar hook-associated protein flgk;
PDBTitle: the structure of the flagellar hook junction protein hap1 (flgk) from2 campylobacter jejuni
18c4rh7A_



70.8 7
PDB header:motor protein
Chain: A: PDB Molecule:green fluorescent protein/cytoplasmic dynein 2 heavy chain
PDBTitle: crystal structure of human cytoplasmic dynein 2 motor domain in2 complex with adp.vi
19c3cwgA_



70.0 7
PDB header:transcription
Chain: A: PDB Molecule:signal transducer and activator of transcription
PDBTitle: unphosphorylated mouse stat3 core fragment
20c5szsC_



69.2 11
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: glycan shield and epitope masking of a coronavirus spike protein2 observed by cryo-electron microscopy
21c4ut1A_



not modelled 69.0 13
PDB header:motor protein
Chain: A: PDB Molecule:flagellar hook-associated protein;
PDBTitle: the structure of the flagellar hook junction protein flgk2 from burkholderia pseudomallei
22c3vkhA_



not modelled 68.8 8
PDB header:motor protein
Chain: A: PDB Molecule:dynein heavy chain, cytoplasmic;
PDBTitle: x-ray structure of a functional full-length dynein motor domain
23c2wpqA_



not modelled 68.4 5
PDB header:membrane protein
Chain: A: PDB Molecule:trimeric autotransporter adhesin fragment;
PDBTitle: salmonella enterica sada 479-519 fused to gcn4 adaptors (sadak3, in-2 register fusion)
24c1deqF_



not modelled 65.4 10
PDB header:blood clotting
Chain: F: PDB Molecule:fibrinogen (gamma chain);
PDBTitle: the crystal structure of modified bovine fibrinogen (at ~42 angstrom resolution)
25c5x5bB_



not modelled 64.8 6
PDB header:viral protein
Chain: B: PDB Molecule:spike glycoprotein;
PDBTitle: prefusion structure of sars-cov spike glycoprotein, conformation 2
26c3jclC_



not modelled 61.3 11
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: cryo-electron microscopy structure of a coronavirus spike glycoprotein2 trimer
27d1h9ra2



not modelled 60.7 16
Fold:OB-fold
Superfamily:MOP-like
Family:BiMOP, duplicated molybdate-binding domain
28c6b7nC_



not modelled 60.1 10
PDB header:viral protein
Chain: C: PDB Molecule:spike protein;
PDBTitle: cryo-electron microscopy structure of porcine delta coronavirus spike2 protein in the pre-fusion state
29c6nzkB_



not modelled 59.6 8
PDB header:viral protein
Chain: B: PDB Molecule:spike surface glycoprotein;
PDBTitle: structural basis for human coronavirus attachment to sialic acid2 receptors
30c3lnrA_



not modelled 59.4 16
PDB header:signaling protein
Chain: A: PDB Molecule:aerotaxis transducer aer2;
PDBTitle: crystal structure of poly-hamp domains from the p. aeruginosa soluble2 receptor aer2
31c2qf4A_



not modelled 58.2 13
PDB header:structural protein
Chain: A: PDB Molecule:cell shape determining protein mrec;
PDBTitle: high resolution structure of the major periplasmic domain from the2 cell shape-determining filament mrec (orthorhombic form)
32c5xlrC_



not modelled 58.0 6
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: structure of sars-cov spike glycoprotein
33d1eq1a_



not modelled 57.7 16
Fold:Apolipophorin-III
Superfamily:Apolipophorin-III
Family:Apolipophorin-III
34c5i08A_



not modelled 57.5 7
PDB header:viral protein
Chain: A: PDB Molecule:spike glycoprotein, envelope glycoprotein chimera;
PDBTitle: prefusion structure of a human coronavirus spike protein
35c6nb3B_



not modelled 54.9 13
PDB header:virus
Chain: B: PDB Molecule:spike glycoprotein;
PDBTitle: mers-cov complex with human neutralizing lca60 antibody fab fragment2 (state 1)
36c5x5fC_



not modelled 51.3 13
PDB header:viral protein
Chain: C: PDB Molecule:s protein;
PDBTitle: prefusion structure of mers-cov spike glycoprotein, conformation 2
37c1ei3C_



not modelled 51.2 10
PDB header:blood clotting
Chain: C: PDB Molecule:fibrinogen;
PDBTitle: crystal structure of native chicken fibrinogen
38c1kmiZ_



not modelled 50.1 10
PDB header:signaling protein
Chain: Z: PDB Molecule:chemotaxis protein chez;
PDBTitle: crystal structure of an e.coli chemotaxis protein, chez
39c5wrgB_



not modelled 49.6 6
PDB header:virus like particle
Chain: B: PDB Molecule:spike glycoprotein;
PDBTitle: sars-cov spike glycoprotein
40d1h9ma2



not modelled 49.1 32
Fold:OB-fold
Superfamily:MOP-like
Family:BiMOP, duplicated molybdate-binding domain
41c5lp5F_



not modelled 48.9 22
PDB header:hydrolase/antibiotic
Chain: F: PDB Molecule:rod shape-determining protein (mrec);
PDBTitle: complex between penicillin-binding protein (pbp2) and mrec from2 helicobacter pylori
42c3ghgI_



not modelled 48.3 8
PDB header:blood clotting
Chain: I: PDB Molecule:fibrinogen gamma chain;
PDBTitle: crystal structure of human fibrinogen
43d1guta_



not modelled 48.3 20
Fold:OB-fold
Superfamily:MOP-like
Family:Molybdate/tungstate binding protein MOP
44c4abxB_



not modelled 47.7 8
PDB header:dna binding protein
Chain: B: PDB Molecule:dna repair protein recn;
PDBTitle: crystal structure of deinococcus radiodurans recn coiled-2 coil domain
45c4zzkA_



not modelled 46.6 17
PDB header:motor protein
Chain: A: PDB Molecule:basal-body rod modification protein flgd;
PDBTitle: crystal structure of truncated flgd (monoclinic form) from the human2 pathogen helicobacter pylori
46d1h9ma1



not modelled 44.7 24
Fold:OB-fold
Superfamily:MOP-like
Family:BiMOP, duplicated molybdate-binding domain
47d1ykhb1



not modelled 43.0 8
Fold:Mediator hinge subcomplex-like
Superfamily:Mediator hinge subcomplex-like
Family:CSE2-like
48c3dyjA_



not modelled 42.3 13
PDB header:structural protein
Chain: A: PDB Molecule:talin-1;
PDBTitle: crystal structure a talin rod fragment
49c1deqO_



not modelled 40.6 10
PDB header:blood clotting
Chain: O: PDB Molecule:fibrinogen (beta chain);
PDBTitle: the crystal structure of modified bovine fibrinogen (at ~42 angstrom resolution)
50c6cs2A_



not modelled 40.5 6
PDB header:viral protein/hydrolase
Chain: A: PDB Molecule:spike glycoprotein,fibritin;
PDBTitle: sars spike glycoprotein - human ace2 complex, stabilized variant, all2 ace2-bound particles
51d1st6a5



not modelled 39.5 11
Fold:Four-helical up-and-down bundle
Superfamily:alpha-catenin/vinculin-like
Family:alpha-catenin/vinculin
52c4n21E_



not modelled 39.3 10
PDB header:viral protein
Chain: E: PDB Molecule:gp2 ectodomain;
PDBTitle: crystal structure of the gp2 core domain from the california academy2 of science virus
53c1ei3E_



not modelled 39.1 12
PDB header:blood clotting
Chain: E: PDB Molecule:fibrinogen;
PDBTitle: crystal structure of native chicken fibrinogen
54c5lskD_



not modelled 38.1 13
PDB header:cell cycle
Chain: D: PDB Molecule:kinetochore-associated protein dsn1 homolog;
PDBTitle: crystal structure of the human kinetochore mis12-cenp-c complex
55d1x9la_



not modelled 36.2 22
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:DR1885-like metal-binding protein
Family:DR1885-like metal-binding protein
56d2uubl1



not modelled 36.0 23
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
57c4tkoB_



not modelled 35.9 14
PDB header:membrane protein
Chain: B: PDB Molecule:emra;
PDBTitle: structure of the periplasmic adaptor protein emra
58c3j6vL_



not modelled 34.9 19
PDB header:ribosome
Chain: L: PDB Molecule:28s ribosomal protein s12, mitochondrial;
PDBTitle: cryo-em structure of the small subunit of the mammalian mitochondrial2 ribosome
59c1bf5A_



not modelled 34.9 11
PDB header:gene regulation/dna
Chain: A: PDB Molecule:signal transducer and activator of transcription 1-
PDBTitle: tyrosine phosphorylated stat-1/dna complex
60c2kbbA_



not modelled 34.9 13
PDB header:structural protein
Chain: A: PDB Molecule:talin-1;
PDBTitle: nmr structure of the talin rod domain, 1655-1822
61c2k6zA_



not modelled 34.8 20
PDB header:metal transport
Chain: A: PDB Molecule:putative uncharacterized protein ttha1943;
PDBTitle: solution structures of copper loaded form pcua (trans2 conformation of the peptide bond involving the nitrogen of3 p14)
62c3c12A_



not modelled 34.4 20
PDB header:biosynthetic protein
Chain: A: PDB Molecule:flagellar protein;
PDBTitle: crystal structure of flgd from xanthomonas campestris:2 insights into the hook capping essential for flagellar3 assembly
63c6e6aB_



not modelled 34.2 11
PDB header:protein binding
Chain: B: PDB Molecule:inclusion membrane protein a;
PDBTitle: triclinic crystal form of inca g144a point mutant
64c1zn1L_



not modelled 32.5 16
PDB header:biosynthetic/structural protein/rna
Chain: L: PDB Molecule:30s ribosomal protein s12;
PDBTitle: coordinates of rrf fitted into cryo-em map of the 70s post-termination2 complex
65c3zk0A_



not modelled 31.5 13
PDB header:chaperone
Chain: A: PDB Molecule:sco3965;
PDBTitle: the crystal structure of a cu(i) metallochaperone from2 streptomyces lividans in its apo form
66d1st6a4



not modelled 31.4 4
Fold:Four-helical up-and-down bundle
Superfamily:alpha-catenin/vinculin-like
Family:alpha-catenin/vinculin
67c5zuvB_



not modelled 31.0 8
PDB header:viral protein, inhibitor
Chain: B: PDB Molecule:spike glycoprotein,spike glycoprotein,inhibitor ek1;
PDBTitle: crystal structure of the human coronavirus 229e hr1 motif in complex2 with pan-covs inhibitor ek1
68c2vs0B_



not modelled 30.9 11
PDB header:cell invasion
Chain: B: PDB Molecule:virulence factor esxa;
PDBTitle: structural analysis of homodimeric staphylococcal aureus2 virulence factor esxa
69c5yfpD_



not modelled 29.5 7
PDB header:exocytosis
Chain: D: PDB Molecule:exocyst complex component sec8;
PDBTitle: cryo-em structure of the exocyst complex
70c3ojaB_



not modelled 28.5 10
PDB header:protein binding
Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein
PDBTitle: crystal structure of lrim1/apl1c complex
71c1h9mB_



not modelled 27.3 28
PDB header:binding protein
Chain: B: PDB Molecule:molybdenum-binding-protein;
PDBTitle: two crystal structures of the cytoplasmic molybdate-binding protein2 modg suggest a novel cooperative binding mechanism and provide3 insights into ligand-binding specificity. peg-grown form with4 molybdate bound
72d1i94l_



not modelled 26.9 23
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
73c1h9sA_



not modelled 26.4 16
PDB header:transcription regulator
Chain: A: PDB Molecule:molybdenum transport protein mode;
PDBTitle: molybdate bound complex of dimop domain of mode from e.coli
74c4iogD_



not modelled 26.1 11
PDB header:unknown function
Chain: D: PDB Molecule:secreted protein esxb;
PDBTitle: the crystal structure of a secreted protein esxb (wild-type, in p212 space group) from bacillus anthracis str. sterne
75d1v5va1



not modelled 25.9 17
Fold:Elongation factor/aminomethyltransferase common domain
Superfamily:Aminomethyltransferase beta-barrel domain
Family:Aminomethyltransferase beta-barrel domain
76c2ieqC_



not modelled 25.6 7
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: core structure of s2 from the human coronavirus nl63 spike2 glycoprotein
77d2qall1



not modelled 25.0 16
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
78d1hcia4



not modelled 24.9 10
Fold:Spectrin repeat-like
Superfamily:Spectrin repeat
Family:Spectrin repeat
79c5j65A_



not modelled 24.8 8
PDB header:toxin
Chain: A: PDB Molecule:pesticidal crystal protein cry6aa;
PDBTitle: crystal structure of trypsin activated cry6aa
80c5yfpG_



not modelled 24.8 15
PDB header:exocytosis
Chain: G: PDB Molecule:exocyst complex component exo70;
PDBTitle: cryo-em structure of the exocyst complex
81c5j2lB_



not modelled 24.4 17
PDB header:de novo protein
Chain: B: PDB Molecule:protein design 2l4hc2_11;
PDBTitle: de novo design of protein homo-oligomers with modular hydrogen bond2 network-mediated specificity
82c6gajA_



not modelled 24.3 13
PDB header:viral protein
Chain: A: PDB Molecule:outer capsid protein sigma-1;
PDBTitle: crystal structure of the t1l reovirus sigma1 coiled coil tail (iodide)
83c3gvmA_



not modelled 23.4 9
PDB header:viral protein
Chain: A: PDB Molecule:putative uncharacterized protein sag1039;
PDBTitle: structure of the homodimeric wxg-100 family protein from streptococcus2 agalactiae
84c5n76C_



not modelled 22.1 18
PDB header:nickel-binding protein
Chain: C: PDB Molecule:coot;
PDBTitle: crystal structure of the apo-form of the co dehydrogenase accessory2 protein coot from rhodospirillum rubrum
85c6el1F_



not modelled 21.9 9
PDB header:membrane protein
Chain: F: PDB Molecule:yaxa;
PDBTitle: yaxab pore complex
86c3pwxB_



not modelled 21.8 10
PDB header:structural protein
Chain: B: PDB Molecule:putative flagellar hook-associated protein;
PDBTitle: structure of putative flagellar hook-associated protein from vibrio2 parahaemolyticus
87c3zbhC_



not modelled 21.7 10
PDB header:unknown function
Chain: C: PDB Molecule:esxa;
PDBTitle: geobacillus thermodenitrificans esxa crystal form i
88c6cv0C_



not modelled 21.1 13
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: cryo-electron microscopy structure of infectious bronchitis2 coronavirus spike protein
89c6ezvX_



not modelled 21.1 6
PDB header:toxin
Chain: X: PDB Molecule:non-hemolytic enterotoxin lytic component l1;
PDBTitle: the cytotoxin maka from vibrio cholerae
90c4njlA_



not modelled 20.8 13
PDB header:viral protein
Chain: A: PDB Molecule:s protein;
PDBTitle: crystal structure of middle east respiratory syndrome coronavirus s22 protein fusion core
91c6grjG_



not modelled 20.3 6
PDB header:toxin
Chain: G: PDB Molecule:ahlb;
PDBTitle: structure of the ahlb pore of the tripartite alpha-pore forming toxin,2 ahl, from aeromonas hydrophila.
92c5iiaH_



not modelled 20.0 19
PDB header:cell adhesion
Chain: H: PDB Molecule:vitelline envelope sperm lysin receptor;
PDBTitle: crystal structure of red abalone egg verl repeat 3 in complex with2 sperm lysin at 1.7 a resolution (crystal form i)
93d1fr3a_



not modelled 19.8 23
Fold:OB-fold
Superfamily:MOP-like
Family:Molybdate/tungstate binding protein MOP
94c2pjhB_



not modelled 19.6 9
PDB header:transport protein
Chain: B: PDB Molecule:transitional endoplasmic reticulum atpase;
PDBTitle: strctural model of the p97 n domain- npl4 ubd complex
95c5ii5A_



not modelled 19.2 33
PDB header:cell adhesion
Chain: A: PDB Molecule:maltose-binding periplasmic protein,vitelline envelope
PDBTitle: crystal structure of red abalone verl repeat 1 at 1.8 a resolution
96c1mg1A_



not modelled 19.1 13
PDB header:viral protein
Chain: A: PDB Molecule:protein (htlv-1 gp21 ectodomain/maltose-binding protein
PDBTitle: htlv-1 gp21 ectodomain/maltose-binding protein chimera
97c4f7gB_



not modelled 19.0 13
PDB header:cell adhesion
Chain: B: PDB Molecule:talin-1;
PDBTitle: crystal structure of talin autoinhibition complex
98c5j0hA_



not modelled 17.5 24
PDB header:de novo protein
Chain: A: PDB Molecule:design construct 2l6hc3_13;
PDBTitle: de novo design of protein homo-oligomers with modular hydrogen bond2 network-mediated specificity
99c1cz5A_



not modelled 16.2 15
PDB header:hydrolase
Chain: A: PDB Molecule:vcp-like atpase;
PDBTitle: nmr structure of vat-n: the n-terminal domain of vat (vcp-2 like atpase of thermoplasma)

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below