Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0624_(-)_716667_717062
DateFri Jul 26 01:50:18 BST 2019
Unique Job ID3303b776fce2ad9d
SequenceMVIDTSALVA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:31.881 Y:41.762 Z:41.473
Model (left) based on template c4xgrG_
Top template information
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc30;
PDBTitle: crystal structure of addiction module from mycobacterial species
Confidence and coverage
Confidence:100.0% Coverage: 96%
126 residues ( 96% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4xgrG_



100.0 97
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc30;
PDBTitle: crystal structure of addiction module from mycobacterial species
2c5wzfB_



99.9 16
PDB header:hydrolase
Chain: B: PDB Molecule:23s rrna-specific endonuclease vapc20;
PDBTitle: crystal structure of mycobacterium tuberculosis vapc20 (rv2549c),2 sarcin-ricin loop cleaving toxin
3c3h87B_



99.9 21
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis
4d2h1ca1



99.9 14
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
5c5sv2A_



99.8 13
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease vapc21;
PDBTitle: toxin vapc21 from mycobacterium tuberculosis
6c3dboB_



99.8 18
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a member of the vapbc family of toxin-antitoxin2 systems, vapbc-5, from mycobacterium tuberculosis
7c3zvkC_



99.8 8
PDB header:antitoxin/toxin/dna
Chain: C: PDB Molecule:toxin of toxin-antitoxin system;
PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter
8c5l6mC_



99.8 15
PDB header:hydrolase
Chain: C: PDB Molecule:ribonuclease vapc;
PDBTitle: structure of caulobacter crescentus vapbc1 (vapb1deltac:vapc1 form)
9c6nklA_



99.8 15
PDB header:antitoxin
Chain: A: PDB Molecule:ribonuclease vapc;
PDBTitle: 2.2 a resolution structure of vapbc-1 from nontypeable haemophilus2 influenzae
10d1v96a1



99.8 18
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
11c4chgC_



99.8 18
PDB header:toxin/antitoxin
Chain: C: PDB Molecule:probable ribonuclease vapc15;
PDBTitle: crystal structure of vapbc15 complex from mycobacterium tuberculosis
12d1y82a1



99.8 13
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
13c3tndC_



99.8 13
PDB header:translation, toxin
Chain: C: PDB Molecule:trna(fmet)-specific endonuclease vapc;
PDBTitle: crystal structure of shigella flexneri vapbc toxin-antitoxin complex
14c6a7vG_



99.8 19
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
15c5x3tD_



99.8 20
PDB header:antitoxin/toxin
Chain: D: PDB Molecule:ribonuclease vapc26;
PDBTitle: vapbc from mycobacterium tuberculosis
16d2fe1a1



99.7 22
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
17c2fe1A_



99.7 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein pae0151;
PDBTitle: crystal structure of pae0151 from pyrobaculum aerophilum
18d1w8ia_



99.5 15
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
19d1v8pa_



99.2 19
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
20c1v8pK_



99.2 19
PDB header:structural genomics, unknown function
Chain: K: PDB Molecule:hypothetical protein pae2754;
PDBTitle: crystal structure of pae2754 from pyrobaculum aerophilum
21c3ix7A_



not modelled 98.3 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ttha0540;
PDBTitle: crystal structure of a domain of functionally unknown protein from2 thermus thermophilus hb8
22c2lcqA_



not modelled 97.9 15
PDB header:metal binding protein
Chain: A: PDB Molecule:putative toxin vapc6;
PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii
23c3i8oA_



not modelled 97.8 17
PDB header:rna binding protein
Chain: A: PDB Molecule:kh domain-containing protein mj1533;
PDBTitle: a domain of a functionally unknown protein from methanocaldococcus2 jannaschii dsm 2661.
24c5f4hF_



not modelled 97.2 15
PDB header:hydrolase
Chain: F: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
25d1o4wa_



not modelled 97.2 18
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
26c5ywwA_



not modelled 97.2 15
PDB header:hydrolase
Chain: A: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
27c2hwwC_



not modelled 95.8 13
PDB header:rna binding protein
Chain: C: PDB Molecule:telomerase-binding protein est1a;
PDBTitle: structure of pin domain of human smg6
28c5yz4A_



not modelled 94.7 15
PDB header:hydrolase
Chain: A: PDB Molecule:rrna-processing protein fcf1;
PDBTitle: structure of the pin domain endonuclease utp24
29c5jpqd_



not modelled 93.9 16
PDB header:ribosome
Chain: D: PDB Molecule:wd40 domain proteins;
PDBTitle: cryo-em structure of the 90s pre-ribosome
30c6g5iy_



not modelled 91.4 11
PDB header:ribosome
Chain: Y: PDB Molecule:40s ribosomal protein s24;
PDBTitle: cryo-em structure of a late human pre-40s ribosomal subunit - state r
31c2hwyB_



not modelled 85.9 13
PDB header:rna binding protein
Chain: B: PDB Molecule:protein smg5;
PDBTitle: structure of pin domain of human smg5.
32c4mj7B_



not modelled 80.7 7
PDB header:rna binding protein
Chain: B: PDB Molecule:rrna-processing protein utp23;
PDBTitle: crystal structure of the pin domain of saccharomyces cerevisiae utp23
33c3v32B_



not modelled 61.6 22
PDB header:hydrolase
Chain: B: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 n-terminal conserved domain
34c3v33A_



not modelled 58.8 26
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 conserved domain with zinc-finger motif
35d1cmwa2



not modelled 46.1 23
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
36c3zddA_



not modelled 30.1 12
PDB header:hydrolase/dna
Chain: A: PDB Molecule:protein xni;
PDBTitle: structure of e. coli exoix in complex with the palindromic 5ov62 oligonucleotide and potassium
37d1xo1a2



not modelled 29.8 19
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
38d1tfra2



not modelled 26.7 15
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
39c4o9uB_



not modelled 14.9 31
PDB header:membrane protein
Chain: B: PDB Molecule:nad(p) transhydrogenase subunit beta;
PDBTitle: mechanism of transhydrogenase coupling proton translocation and2 hydride transfer
40d1d4oa_



not modelled 14.6 38
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Transhydrogenase domain III (dIII)
41c1pt9B_



not modelled 14.5 38
PDB header:oxidoreductase
Chain: B: PDB Molecule:nad(p) transhydrogenase, mitochondrial;
PDBTitle: crystal structure analysis of the diii component of transhydrogenase2 with a thio-nicotinamide nucleotide analogue
42d1pnoa_



not modelled 14.1 38
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Transhydrogenase domain III (dIII)
43c4rodA_



not modelled 10.7 14
PDB header:transcription
Chain: A: PDB Molecule:transcription factor iiib 50 kda subunit;
PDBTitle: human tfiib-related factor 2 (brf2) and tbp bound to trnau1 promoter
44c4mitG_



not modelled 10.3 26
PDB header:signaling protein
Chain: G: PDB Molecule:serine/threonine protein kinase pak, putative;
PDBTitle: crystal structure of e. histolytica racc bound to the ehpak4 pbd
45c2ihnA_



not modelled 10.0 19
PDB header:hydrolase/dna
Chain: A: PDB Molecule:ribonuclease h;
PDBTitle: co-crystal of bacteriophage t4 rnase h with a fork dna2 substrate
46c1ut8B_



not modelled 9.9 19
PDB header:hydrolase
Chain: B: PDB Molecule:exodeoxyribonuclease;
PDBTitle: divalent metal ions (zinc) bound to t5 5'-exonuclease
47c1cmwA_



not modelled 8.8 23
PDB header:transferase
Chain: A: PDB Molecule:protein (dna polymerase i);
PDBTitle: crystal structure of taq dna-polymerase shows a new orientation for2 the structure-specific nuclease domain
48c2bruC_



not modelled 8.4 38
PDB header:oxidoreductase
Chain: C: PDB Molecule:nad(p) transhydrogenase subunit beta;
PDBTitle: complex of the domain i and domain iii of escherichia coli2 transhydrogenase
49d1qf6a1



not modelled 7.6 8
Fold:Anticodon-binding domain-like
Superfamily:Class II aaRS ABD-related
Family:Anticodon-binding domain of Class II aaRS
50d1qd1a1



not modelled 6.9 24
Fold:Ferredoxin-like
Superfamily:Formiminotransferase domain of formiminotransferase-cyclodeaminase.
Family:Formiminotransferase domain of formiminotransferase-cyclodeaminase.
51c4pn7A_



not modelled 6.8 19
PDB header:transcription
Chain: A: PDB Molecule:putative transcription factor;
PDBTitle: crystal structure of the tfiih p34 n-terminal domain
52c6f42V_



not modelled 6.8 10
PDB header:transcription
Chain: V: PDB Molecule:transcription factor iiib 70 kda subunit;
PDBTitle: rna polymerase iii closed complex cc1.
53c5a79A_



not modelled 6.6 13
PDB header:virus
Chain: A: PDB Molecule:capsid protein;
PDBTitle: novel inter-subunit contacts in barley stripe mosaic virus revealed by2 cryo-em
54c4mitE_



not modelled 6.0 27
PDB header:signaling protein
Chain: E: PDB Molecule:serine/threonine protein kinase pak, putative;
PDBTitle: crystal structure of e. histolytica racc bound to the ehpak4 pbd
55d1pkxa2



not modelled 5.8 19
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC
56c6cnbR_



not modelled 5.7 12
PDB header:transcription/dna
Chain: R: PDB Molecule:transcription factor iiib 70 kda subunit,tata-box-binding
PDBTitle: yeast rna polymerase iii initial transcribing complex
57d1g8ma2



not modelled 5.4 19
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC
58c3if4C_



not modelled 5.4 18
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:integron cassette protein hfx_cass5;
PDBTitle: structure from the mobile metagenome of north west arm sewage outfall:2 integron cassette protein hfx_cass5
59d1zcza2



not modelled 5.3 19
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC
60d3eeqa1



not modelled 5.3 11
Fold:CobE/GbiG C-terminal domain-like
Superfamily:CobE/GbiG C-terminal domain-like
Family:CobE/GbiG C-terminal domain-like
61c1jqsB_



not modelled 5.2 33
PDB header:ribosome
Chain: B: PDB Molecule:elongation factor g;
PDBTitle: fitting of l11 protein and elongation factor g (domain g'2 and v) in the cryo-em map of e. coli 70s ribosome bound3 with ef-g and gmppcp, a nonhydrolysable gtp analog

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