Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0803_(purL)_895823_898087
DateFri Jul 26 01:50:38 BST 2019
Unique Job IDfd3215139c9c7c53
SequenceVLDTVEHAAT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:82.169 Y:71.524 Z:71.089
Model (left) based on template c1t3tA_
Top template information
PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase;
PDBTitle: structure of formylglycinamide synthetase
Confidence and coverage
Confidence:100.0% Coverage: 96%
721 residues ( 96% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1t3tA_
100.0 27
PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase;
PDBTitle: structure of formylglycinamide synthetase
2c3ac6A_
100.0 43
PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase 2;
PDBTitle: crystal structure of purl from thermus thermophilus
3c3d54I_
100.0 39
PDB header:ligase
Chain: I: PDB Molecule:phosphoribosylformylglycinamidine synthase ii;
PDBTitle: structure of purlqs from thermotoga maritima
4c2hs0A_
100.0 40
PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase ii;
PDBTitle: t. maritima purl complexed with atp
5d1vk3a1
100.0 51
Fold:Bacillus chorismate mutase-like
Superfamily:PurM N-terminal domain-like
Family:PurM N-terminal domain-like
6c2btuB_
100.0 19
PDB header:synthase
Chain: B: PDB Molecule:phosphoribosyl-aminoimidazole synthetase;
PDBTitle: crystal structure of phosphoribosylformylglycinamidine cyclo-ligase2 from bacillus anthracis at 2.3a resolution.
7c3vysC_
100.0 20
PDB header:metal binding protein/transferase
Chain: C: PDB Molecule:hydrogenase expression/formation protein hype;
PDBTitle: crystal structure of the hypc-hypd-hype complex (form i)
8c3mcqA_
100.0 16
PDB header:transferase
Chain: A: PDB Molecule:thiamine-monophosphate kinase;
PDBTitle: crystal structure of thiamine-monophosphate kinase (mfla_0573) from2 methylobacillus flagellatus kt at 1.91 a resolution
9c5cm7A_
100.0 19
PDB header:transferase
Chain: A: PDB Molecule:thiamine-monophosphate kinase;
PDBTitle: structure of thiamine-monophosphate kinase from acinetobacter2 baumannii in complex with adenosine diphosphate (adp) and thiamine3 diphosphate (tpp)
10c5vk4B_
100.0 20
PDB header:ligase
Chain: B: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase;
PDBTitle: crystal structure of a phosphoribosylformylglycinamidine cyclo-ligase2 from neisseria gonorrhoeae bound to amppnp and magnesium
11c3fd5B_
100.0 18
PDB header:transferase
Chain: B: PDB Molecule:selenide, water dikinase 1;
PDBTitle: crystal structure of human selenophosphate synthetase 12 complex with ampcp
12c1cliD_
100.0 18
PDB header:ligase
Chain: D: PDB Molecule:protein (phosphoribosyl-aminoimidazole synthetase);
PDBTitle: x-ray crystal structure of aminoimidazole ribonucleotide synthetase2 (purm), from the e. coli purine biosynthetic pathway, at 2.5 a3 resolution
13c3u0oA_
100.0 20
PDB header:transferase
Chain: A: PDB Molecule:selenide, water dikinase;
PDBTitle: the crystal structure of selenophosphate synthetase from e. coli
14c2z1eA_
100.0 20
PDB header:transferase
Chain: A: PDB Molecule:hydrogenase expression/formation protein hype;
PDBTitle: crystal structure of hype from thermococcus kodakaraensis (outward2 form)
15c2zodB_
100.0 18
PDB header:transferase
Chain: B: PDB Molecule:selenide, water dikinase;
PDBTitle: crystal structure of selenophosphate synthetase from aquifex aeolicus
16c2zauB_
100.0 19
PDB header:transferase
Chain: B: PDB Molecule:selenide, water dikinase;
PDBTitle: crystal structure of an n-terminally truncated2 selenophosphate synthetase from aquifex aeolicus
17c3vtiD_
100.0 17
PDB header:transferase
Chain: D: PDB Molecule:hydrogenase maturation factor;
PDBTitle: crystal structure of hype-hypf complex
18c2z1tA_
100.0 20
PDB header:lyase
Chain: A: PDB Molecule:hydrogenase expression/formation protein hype;
PDBTitle: crystal structure of hydrogenase maturation protein hype
19c2rb9D_
100.0 18
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:hype protein;
PDBTitle: crystal structure of e.coli hype
20d1t3ta5
100.0 22
Fold:Bacillus chorismate mutase-like
Superfamily:PurM N-terminal domain-like
Family:PurM N-terminal domain-like
21c3m84A_
not modelled 100.0 17
PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase;
PDBTitle: crystal structure of phosphoribosylaminoimidazole synthetase from2 francisella tularensis
22c2yxzA_
not modelled 100.0 22
PDB header:transferase
Chain: A: PDB Molecule:thiamin-monophosphate kinase;
PDBTitle: crystal structure of tt0281 from thermus thermophilus hb8
23c2z01A_
not modelled 100.0 20
PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase;
PDBTitle: crystal structure of phosphoribosylaminoimidazole synthetase from2 geobacillus kaustophilus
24c3c9uB_
not modelled 100.0 16
PDB header:transferase
Chain: B: PDB Molecule:thiamine monophosphate kinase;
PDBTitle: aathil complexed with adp and tpp
25c2v9yA_
not modelled 100.0 19
PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase;
PDBTitle: human aminoimidazole ribonucleotide synthetase
26d1vk3a2
not modelled 100.0 32
Fold:Bacillus chorismate mutase-like
Superfamily:PurM N-terminal domain-like
Family:PurM N-terminal domain-like
27c5l16A_
not modelled 100.0 16
PDB header:transferase
Chain: A: PDB Molecule:putative selenophosphate synthetase;
PDBTitle: crystal structure of n-terminus truncated selenophosphate synthetase2 from leishmania major
28c1vqvB_
not modelled 100.0 16
PDB header:transferase
Chain: B: PDB Molecule:thiamine monophosphate kinase;
PDBTitle: crystal structure of thiamine monophosphate kinase (thil)2 from aquifex aeolicus
29c5avmE_
not modelled 100.0 18
PDB header:ligase
Chain: E: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase;
PDBTitle: crystal structures of 5-aminoimidazole ribonucleotide (air)2 synthetase, purm, from thermus thermophilus
30d1t3ta6
not modelled 100.0 31
Fold:PurM C-terminal domain-like
Superfamily:PurM C-terminal domain-like
Family:PurM C-terminal domain-like
31d1t3ta4
not modelled 100.0 29
Fold:Bacillus chorismate mutase-like
Superfamily:PurM N-terminal domain-like
Family:PurM N-terminal domain-like
32d1vk3a3
not modelled 100.0 44
Fold:PurM C-terminal domain-like
Superfamily:PurM C-terminal domain-like
Family:PurM C-terminal domain-like
33c3mdoB_
not modelled 100.0 16
PDB header:ligase
Chain: B: PDB Molecule:putative phosphoribosylformylglycinamidine cyclo-ligase;
PDBTitle: crystal structure of a putative phosphoribosylformylglycinamidine2 cyclo-ligase (bdi_2101) from parabacteroides distasonis atcc 8503 at3 1.91 a resolution
34d1t3ta7
not modelled 100.0 24
Fold:PurM C-terminal domain-like
Superfamily:PurM C-terminal domain-like
Family:PurM C-terminal domain-like
35c3kizA_
not modelled 100.0 19
PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase;
PDBTitle: crystal structure of putative phosphoribosylformylglycinamidine cyclo-2 ligase (yp_676759.1) from cytophaga hutchinsonii atcc 33406 at 1.50 a3 resolution
36d2z1ea2
not modelled 99.9 19
Fold:PurM C-terminal domain-like
Superfamily:PurM C-terminal domain-like
Family:PurM C-terminal domain-like
37d2zoda2
not modelled 99.9 16
Fold:PurM C-terminal domain-like
Superfamily:PurM C-terminal domain-like
Family:PurM C-terminal domain-like
38d1clia2
not modelled 99.9 19
Fold:PurM C-terminal domain-like
Superfamily:PurM C-terminal domain-like
Family:PurM C-terminal domain-like
39d1clia1
not modelled 99.9 21
Fold:Bacillus chorismate mutase-like
Superfamily:PurM N-terminal domain-like
Family:PurM N-terminal domain-like
40d1clib1
not modelled 99.9 19
Fold:Bacillus chorismate mutase-like
Superfamily:PurM N-terminal domain-like
Family:PurM N-terminal domain-like
41d3c9ua2
not modelled 99.9 17
Fold:PurM C-terminal domain-like
Superfamily:PurM C-terminal domain-like
Family:PurM C-terminal domain-like
42d2zaua1
not modelled 99.8 23
Fold:Bacillus chorismate mutase-like
Superfamily:PurM N-terminal domain-like
Family:PurM N-terminal domain-like
43d2zoda1
not modelled 99.8 23
Fold:Bacillus chorismate mutase-like
Superfamily:PurM N-terminal domain-like
Family:PurM N-terminal domain-like
44d3c9ua1
not modelled 99.8 16
Fold:Bacillus chorismate mutase-like
Superfamily:PurM N-terminal domain-like
Family:PurM N-terminal domain-like
45d1t3ta1
not modelled 99.7 32
Fold:RuvA C-terminal domain-like
Superfamily:FGAM synthase PurL, linker domain
Family:FGAM synthase PurL, linker domain
46d2z1ea1
not modelled 99.7 21
Fold:Bacillus chorismate mutase-like
Superfamily:PurM N-terminal domain-like
Family:PurM N-terminal domain-like
47c5kdmD_
not modelled 96.9 16
PDB header:chaperone / dna binding protein
Chain: D: PDB Molecule:major tegument protein;
PDBTitle: crystal structure of ebv tegument protein bnrf1 in complex with2 histone chaperone daxx and histones h3.3-h4
48d3dhxa1
not modelled 60.1 12
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:NIL domain-like
49c4zc0A_
not modelled 53.6 20
PDB header:hydrolase
Chain: A: PDB Molecule:replicative dna helicase;
PDBTitle: structure of a dodecameric bacterial helicase
50d1rp3a1
not modelled 52.5 44
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma3 domain
51d1ku2a1
not modelled 50.2 47
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma3 domain
52c1l0oC_
not modelled 49.7 39
PDB header:protein binding
Chain: C: PDB Molecule:sigma factor;
PDBTitle: crystal structure of the bacillus stearothermophilus anti-2 sigma factor spoiiab with the sporulation sigma factor3 sigmaf
53d1l0oc_
not modelled 49.7 39
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
54c2zc2A_
not modelled 46.5 21
PDB header:replication
Chain: A: PDB Molecule:dnad-like replication protein;
PDBTitle: crystal structure of dnad-like replication protein from streptococcus2 mutans ua159, gi 24377835, residues 127-199
55d1to3a_
not modelled 46.2 21
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
56c3jrkG_
not modelled 44.6 20
PDB header:lyase
Chain: G: PDB Molecule:tagatose 1,6-diphosphate aldolase 2;
PDBTitle: a putative tagatose 1,6-diphosphate aldolase from streptococcus2 pyogenes
57d1llua2
not modelled 39.9 14
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Alcohol dehydrogenase-like, C-terminal domain
58c1yvlB_
not modelled 39.0 18
PDB header:signaling protein
Chain: B: PDB Molecule:signal transducer and activator of transcription
PDBTitle: structure of unphosphorylated stat1
59d2csua1
not modelled 38.7 9
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
60d2qrra1
not modelled 38.1 10
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:NIL domain-like
61c1szpC_
not modelled 35.7 16
PDB header:dna binding protein
Chain: C: PDB Molecule:dna repair protein rad51;
PDBTitle: a crystal structure of the rad51 filament
62c3bkhA_
not modelled 35.2 30
PDB header:hydrolase
Chain: A: PDB Molecule:lytic transglycosylase;
PDBTitle: crystal structure of the bacteriophage phikz lytic2 transglycosylase, gp144
63d1pyta_
not modelled 34.3 8
Fold:Ferredoxin-like
Superfamily:Protease propeptides/inhibitors
Family:Pancreatic carboxypeptidase, activation domain
64c4nmnA_
not modelled 33.7 18
PDB header:replication
Chain: A: PDB Molecule:replicative dna helicase;
PDBTitle: aquifex aeolicus replicative helicase (dnab) complexed with adp, at2 3.3 resolution
65d1o6xa_
not modelled 33.7 16
Fold:Ferredoxin-like
Superfamily:Protease propeptides/inhibitors
Family:Pancreatic carboxypeptidase, activation domain
66d1pcaa1
not modelled 33.4 12
Fold:Ferredoxin-like
Superfamily:Protease propeptides/inhibitors
Family:Pancreatic carboxypeptidase, activation domain
67d1ayea2
not modelled 32.7 16
Fold:Ferredoxin-like
Superfamily:Protease propeptides/inhibitors
Family:Pancreatic carboxypeptidase, activation domain
68d1kwma2
not modelled 32.2 16
Fold:Ferredoxin-like
Superfamily:Protease propeptides/inhibitors
Family:Pancreatic carboxypeptidase, activation domain
69d2boaa2
not modelled 31.8 20
Fold:Ferredoxin-like
Superfamily:Protease propeptides/inhibitors
Family:Pancreatic carboxypeptidase, activation domain
70d1rjwa2
not modelled 30.5 10
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Alcohol dehydrogenase-like, C-terminal domain
71d1uufa2
not modelled 30.4 11
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Alcohol dehydrogenase-like, C-terminal domain
72d1piwa2
not modelled 30.4 16
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Alcohol dehydrogenase-like, C-terminal domain
73c4y5wD_
not modelled 30.2 15
PDB header:transcription/dna
Chain: D: PDB Molecule:signal transducer and activator of transcription 6;
PDBTitle: transcription factor-dna complex
74c5l37E_
not modelled 29.8 16
PDB header:structural protein
Chain: E: PDB Molecule:msm0273;
PDBTitle: the structure of the pentameric shell protein msm0273 from the rmm2 microcompartment
75d1nsaa2
not modelled 29.6 16
Fold:Ferredoxin-like
Superfamily:Protease propeptides/inhibitors
Family:Pancreatic carboxypeptidase, activation domain
76c5vt9A_
not modelled 29.3 11
PDB header:motor protein
Chain: A: PDB Molecule:myosin light chain tgmlc1;
PDBTitle: myosin light chain 1 and myoa complex
77d1pbaa_
not modelled 29.0 16
Fold:Ferredoxin-like
Superfamily:Protease propeptides/inhibitors
Family:Pancreatic carboxypeptidase, activation domain
78c4rgwB_
not modelled 26.7 15
PDB header:transferase/transcription
Chain: B: PDB Molecule:transcription initiation factor tfiid subunit 7;
PDBTitle: crystal structure of a taf1-taf7 complex in human transcription factor2 iid
79d1jqga2
not modelled 26.6 12
Fold:Ferredoxin-like
Superfamily:Protease propeptides/inhibitors
Family:Pancreatic carboxypeptidase, activation domain
80c1uusA_
not modelled 24.3 11
PDB header:signal transduction
Chain: A: PDB Molecule:stat protein;
PDBTitle: structure of an activated dictyostelium stat in its2 dna-unbound form
81c3bgwD_
not modelled 24.1 18
PDB header:replication
Chain: D: PDB Molecule:dnab-like replicative helicase;
PDBTitle: the structure of a dnab-like replicative helicase and its interactions2 with primase
82d2rcfa1
not modelled 22.3 14
Fold:OB-fold
Superfamily:EutN/CcmL-like
Family:EutN/CcmL-like
83c5h29A_
not modelled 22.1 9
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin reductase/glutathione-related protein;
PDBTitle: crystal structure of the ntd_n/c domain of alkylhydroperoxide2 reductase ahpf from enterococcus faecalis (v583)
84d2pifa1
not modelled 21.7 19
Fold:PSTPO5379-like
Superfamily:PSTPO5379-like
Family:PSTPO5379-like
85d2qswa1
not modelled 20.1 10
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:NIL domain-like
86c2q6tB_
not modelled 19.7 19
PDB header:hydrolase
Chain: B: PDB Molecule:dnab replication fork helicase;
PDBTitle: crystal structure of the thermus aquaticus dnab monomer
87d2guka1
not modelled 19.7 7
Fold:PG1857-like
Superfamily:PG1857-like
Family:PG1857-like
88c1vjqB_
not modelled 19.6 23
PDB header:structural genomics, de novo protein
Chain: B: PDB Molecule:designed protein;
PDBTitle: designed protein based on backbone conformation of2 procarboxypeptidase-a (1aye) with sidechains chosen for maximal3 predicted stability.
89c2bmaA_
not modelled 18.2 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:glutamate dehydrogenase (nadp+);
PDBTitle: the crystal structure of plasmodium falciparum glutamate2 dehydrogenase, a putative target for novel antimalarial3 drugs
90c2vznA_
not modelled 17.9 33
PDB header:allergen
Chain: A: PDB Molecule:venom allergen 3;
PDBTitle: crystal structure of the major allergen from fire ant venom, sol i 3
91c4ex8A_
not modelled 17.8 21
PDB header:ligase
Chain: A: PDB Molecule:alna;
PDBTitle: crystal structure of the prealnumycin c-glycosynthase alna
92c6bbmA_
not modelled 17.4 15
PDB header:replication
Chain: A: PDB Molecule:replicative dna helicase;
PDBTitle: mechanisms of opening and closing of the bacterial replicative2 helicase: the dnab helicase and lambda p helicase loader complex
93c3gndC_
not modelled 16.9 20
PDB header:lyase
Chain: C: PDB Molecule:aldolase lsrf;
PDBTitle: crystal structure of e. coli lsrf in complex with ribulose-5-phosphate
94c5firH_
not modelled 16.9 17
PDB header:hydrolase
Chain: H: PDB Molecule:paxt-1;
PDBTitle: crystal structure of c. elegans xrn2 in complex with the2 xrn2-binding domain of paxt-1
95d1qnxa_
not modelled 16.9 30
Fold:PR-1-like
Superfamily:PR-1-like
Family:PR-1-like
96d1pbya1
not modelled 16.8 23
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
97c5weeD_
not modelled 16.7 20
PDB header:lipid binding protein
Chain: D: PDB Molecule:venom allergen like protein 4;
PDBTitle: crystal structure of hpval4
98c3if8A_
not modelled 16.4 13
PDB header:cell cycle
Chain: A: PDB Molecule:protein zwilch homolog;
PDBTitle: crystal structure of zwilch, a member of the rzz kinetochore complex
99c2vyeA_
not modelled 15.8 15
PDB header:hydrolase/dna
Chain: A: PDB Molecule:replicative dna helicase;
PDBTitle: crystal structure of the dnac-ssdna complex

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