Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1009_(rpfB)_1128095_1129183
DateWed Jul 31 22:05:08 BST 2019
Unique Job ID4ed7a6a91268db8f
SequenceMLRLVVGALL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:91.119 Y:57.791 Z:51.100
Model (left) based on template c5e27B_
Top template information
PDB header:cell adhesion
Chain: B: PDB Molecule:resuscitation-promoting factor rpfb;
PDBTitle: the structure of resuscitation promoting factor b from m. tuberculosis2 reveals unexpected ubiquitin-like domains
Confidence and coverage
Confidence:100.0% Coverage: 61%
220 residues ( 61% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5e27B_



100.0 100
PDB header:cell adhesion
Chain: B: PDB Molecule:resuscitation-promoting factor rpfb;
PDBTitle: the structure of resuscitation promoting factor b from m. tuberculosis2 reveals unexpected ubiquitin-like domains
2c3eo5A_



100.0 96
PDB header:cell adhesion
Chain: A: PDB Molecule:resuscitation-promoting factor rpfb;
PDBTitle: crystal structure of the resuscitation promoting factor rpfb
3c1xsfA_



100.0 100
PDB header:cell cycle, hydrolase
Chain: A: PDB Molecule:probable resuscitation-promoting factor rpfb;
PDBTitle: solution structure of a resuscitation promoting factor2 domain from mycobacterium tuberculosis
4d1xsfa1



100.0 100
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:RPF-like
5c4ow1A_



100.0 54
PDB header:hydrolase
Chain: A: PDB Molecule:resuscitation-promoting factor rpfc;
PDBTitle: crystal structure of resuscitation promoting factor c
6c3tipA_



99.8 14
PDB header:structural protein
Chain: A: PDB Molecule:surface protein g;
PDBTitle: crystal structure of staphylococcus aureus sasg e-g52 module
7c2ltjA_



99.8 20
PDB header:hydrolase
Chain: A: PDB Molecule:beta-n-acetylhexosaminidase;
PDBTitle: conformational analysis of strh, the surface-attached exo- beta-d-n-2 acetylglucosaminidase from streptococcus pneumoniae
8c4fzqC_



99.7 14
PDB header:immune system
Chain: C: PDB Molecule:uncharacterized protein conserved in bacteria;
PDBTitle: crystal structure of hp0197-g5
9c4fuoA_



99.6 20
PDB header:membrane protein
Chain: A: PDB Molecule:accumulation associated protein;
PDBTitle: structural basis for zn2+-dependent intercellular adhesion in2 staphylococcal biofilms
10c3tiqB_



99.5 13
PDB header:structural protein
Chain: B: PDB Molecule:surface protein g;
PDBTitle: crystal structure of staphylococcus aureus sasg g51-e-g52 module
11d1hfxa_



97.6 22
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
12c2fbdB_



97.6 24
PDB header:hydrolase
Chain: B: PDB Molecule:lysozyme 1;
PDBTitle: the crystallographic structure of the digestive lysozyme 1 from musca2 domestica at 1.90 ang.
13d1yroa1



97.6 18
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
14d1f6sa_



97.5 15
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
15d1fkqa_



97.5 18
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
16d1b9oa_



97.5 19
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
17c2z2fA_



97.4 26
PDB header:hydrolase
Chain: A: PDB Molecule:lysozyme c-2;
PDBTitle: x-ray crystal structure of bovine stomach lysozyme
18d1alca_



97.3 17
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
19d1iiza_



97.3 22
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
20d1jsea_



97.0 18
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
21d1hhla_



not modelled 97.0 20
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
22d1gd6a_



not modelled 97.0 20
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
23d2vb1a1



not modelled 96.9 20
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
24d1ghla_



not modelled 96.9 20
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
25d1ivma_



not modelled 96.8 27
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
26d1lsga1



not modelled 96.8 18
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
27d1qqya_



not modelled 96.8 22
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
28d2eqla_



not modelled 96.7 23
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
29d1juga_



not modelled 96.6 23
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
30d1lmqa_



not modelled 96.5 23
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
31d2nwdx1



not modelled 96.5 28
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
32c2goiC_



not modelled 96.5 21
PDB header:cell adhesion, sugar binding protein
Chain: C: PDB Molecule:sperm lysozyme-like protein 1;
PDBTitle: crystal structure of mouse sperm c-type lysozyme-like protein 1
33d1qsaa2



not modelled 96.4 23
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:Bacterial muramidase, catalytic domain
34c3w6dB_



not modelled 96.4 13
PDB header:hydrolase
Chain: B: PDB Molecule:lysozyme-like chitinolytic enzyme;
PDBTitle: crystal structure of catalytic domain of chitinase from ralstonia sp.2 a-471 (e141q) in complex with tetrasaccharide
35c2y8pA_



not modelled 96.0 22
PDB header:lyase
Chain: A: PDB Molecule:endo-type membrane-bound lytic murein transglycosylase a;
PDBTitle: crystal structure of an outer membrane-anchored endolytic2 peptidoglycan lytic transglycosylase (mlte) from3 escherichia coli
36c3bkhA_



not modelled 95.9 27
PDB header:hydrolase
Chain: A: PDB Molecule:lytic transglycosylase;
PDBTitle: crystal structure of the bacteriophage phikz lytic2 transglycosylase, gp144
37c4cfoB_



not modelled 95.9 19
PDB header:hydrolase
Chain: B: PDB Molecule:mltc;
PDBTitle: structure of lytic transglycosylase mltc from escherichia2 coli in complex with tetrasaccharide at 2.9 a resolution.
38d1gbsa_



not modelled 94.1 23
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:G-type lysozyme
39c4xp8A_



not modelled 93.9 20
PDB header:hydrolase
Chain: A: PDB Molecule:etga protein;
PDBTitle: structure of etga d60n mutant
40c4oz9A_



not modelled 93.8 19
PDB header:lyase
Chain: A: PDB Molecule:membrane-bound lytic murein transglycosylase f;
PDBTitle: crystal structure of mltf from pseudomonas aeruginosa complexed with2 isoleucine
41c3gxkB_



not modelled 93.4 22
PDB header:hydrolase
Chain: B: PDB Molecule:goose-type lysozyme 1;
PDBTitle: the crystal structure of g-type lysozyme from atlantic cod (gadus2 morhua l.) in complex with nag oligomers sheds new light on substrate3 binding and the catalytic mechanism. native structure to 1.9
42c3mgwA_



not modelled 91.1 15
PDB header:hydrolase
Chain: A: PDB Molecule:lysozyme g;
PDBTitle: thermodynamics and structure of a salmon cold-active goose-type2 lysozyme
43c6cfcA_



not modelled 90.4 15
PDB header:hydrolase
Chain: A: PDB Molecule:lytic transglycosylase;
PDBTitle: crystal structure of soluble lytic transglycosylase cj0843 of2 campylobacter jejuni in complex with bulgecin a
44d1y7ma2



not modelled 90.1 9
Fold:LysM domain
Superfamily:LysM domain
Family:LysM domain
45c6fcqA_



not modelled 87.1 20
PDB header:lyase
Chain: A: PDB Molecule:soluble lytic murein transglycosylase;
PDBTitle: the x-ray structure of lytic transglycosylase slt inactive mutant2 e503q from pseudomonas aeruginosa in complex with bulgecin a
46c4ebzA_



not modelled 85.6 15
PDB header:transferase
Chain: A: PDB Molecule:chitin elicitor receptor kinase 1;
PDBTitle: crystal structure of the ectodomain of a receptor like kinase
47c1slyA_



not modelled 85.2 23
PDB header:glycosyltransferase
Chain: A: PDB Molecule:70-kda soluble lytic transglycosylase;
PDBTitle: complex of the 70-kda soluble lytic transglycosylase with2 bulgecin a
48c5ls2B_



not modelled 83.1 9
PDB header:plant protein
Chain: B: PDB Molecule:lysm type receptor kinase;
PDBTitle: receptor mediated chitin perception in legumes is functionally2 seperable from nod factor perception
49c5k2lA_



not modelled 83.0 16
PDB header:hydrolase
Chain: A: PDB Molecule:chitinase, lysozyme;
PDBTitle: crystal structure of lysm domain from volvox carteri chitinase
50c2mkxA_



not modelled 82.5 13
PDB header:hydrolase
Chain: A: PDB Molecule:autolysin;
PDBTitle: solution structure of lysm the peptidoglycan binding domain of2 autolysin atla from enterococcus faecalis
51d1tygb_



not modelled 82.4 13
Fold:beta-Grasp (ubiquitin-like)
Superfamily:MoaD/ThiS
Family:ThiS
52c2kl0A_



not modelled 80.9 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative thiamin biosynthesis this;
PDBTitle: solution nmr structure of rhodopseudomonas palustris rpa3574,2 northeast structural genomics consortium (nesg) target rpr325
53d2cu3a1



not modelled 79.1 12
Fold:beta-Grasp (ubiquitin-like)
Superfamily:MoaD/ThiS
Family:ThiS
54c3ct5A_



not modelled 78.2 16
PDB header:hydrolase
Chain: A: PDB Molecule:morphogenesis protein 1;
PDBTitle: crystal and cryoem structural studies of a cell wall degrading enzyme2 in the bacteriophage phi29 tail
55c4pxvC_



not modelled 76.0 11
PDB header:sugar binding protein
Chain: C: PDB Molecule:chitinase a;
PDBTitle: crystal structure of lysm domain from pteris ryukyuensis chitinase a
56c5bumA_



not modelled 75.5 12
PDB header:sugar binding protein
Chain: A: PDB Molecule:chitinase a;
PDBTitle: crystal structure of lysm domain from equisetum arvense chitinase a
57c5jceA_



not modelled 75.3 16
PDB header:sugar binding protein
Chain: A: PDB Molecule:chitin elicitor-binding protein;
PDBTitle: crystal structure of oscebip complex
58c3l53F_



not modelled 75.0 20
PDB header:structural genomics, unknown function
Chain: F: PDB Molecule:putative fumarylacetoacetate isomerase/hydrolase;
PDBTitle: crystal structure of a putative fumarylacetoacetate2 isomerase/hydrolase from oleispira antarctica
59c4uz2D_



not modelled 74.8 13
PDB header:hydrolase
Chain: D: PDB Molecule:cell wall-binding endopeptidase-related protein;
PDBTitle: crystal structure of the n-terminal lysm domains from the putative2 nlpc/p60 d,l endopeptidase from t. thermophilus
60c2l9yA_



not modelled 74.1 13
PDB header:sugar binding protein
Chain: A: PDB Molecule:cvnh-lysm lectin;
PDBTitle: solution structure of the mocvnh-lysm module from the rice blast2 fungus magnaporthe oryzae protein (mgg_03307)
61c1tygG_



not modelled 73.9 14
PDB header:biosynthetic protein
Chain: G: PDB Molecule:yjbs;
PDBTitle: structure of the thiazole synthase/this complex
62c4b9hA_



not modelled 72.9 15
PDB header:sugar binding protein
Chain: A: PDB Molecule:extracellular protein 6;
PDBTitle: cladosporium fulvum lysm effector ecp6 in complex with a2 beta-1,4-linked n-acetyl-d-glucosamine tetramer: i3c heavy3 atom derivative
63d1e0ga_



not modelled 72.4 11
Fold:LysM domain
Superfamily:LysM domain
Family:LysM domain
64c4xcmB_



not modelled 65.0 7
PDB header:hydrolase
Chain: B: PDB Molecule:cell wall-binding endopeptidase-related protein;
PDBTitle: crystal structure of the putative nlpc/p60 d,l endopeptidase from t.2 thermophilus
65d1qusa_



not modelled 64.6 20
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:Bacterial muramidase, catalytic domain
66d1zud21



not modelled 63.0 21
Fold:beta-Grasp (ubiquitin-like)
Superfamily:MoaD/ThiS
Family:ThiS
67c3cwiA_



not modelled 62.3 19
PDB header:biosynthetic protein
Chain: A: PDB Molecule:thiamine-biosynthesis protein this;
PDBTitle: crystal structure of thiamine biosynthesis protein (this)2 from geobacter metallireducens. northeast structural3 genomics consortium target gmr137
68c1i7oC_



not modelled 62.2 17
PDB header:isomerase, lyase
Chain: C: PDB Molecule:4-hydroxyphenylacetate degradation bifunctional
PDBTitle: crystal structure of hpce
69c2dfuB_



not modelled 56.6 16
PDB header:isomerase
Chain: B: PDB Molecule:probable 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase;
PDBTitle: crystal structure of the 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase2 from thermus thermophilus hb8
70c4anrA_



not modelled 53.2 21
PDB header:lyase
Chain: A: PDB Molecule:soluble lytic transglycosylase b;
PDBTitle: crystal structure of soluble lytic transglycosylase sltb12 from pseudomonas aeruginosa
71c4s3kA_



not modelled 53.0 6
PDB header:hydrolase
Chain: A: PDB Molecule:spore germination protein yaah;
PDBTitle: crystal structure of the bacillus megaterium qm b1551 spore cortex-2 lytic enzyme slel
72d1sawa_



not modelled 51.5 17
Fold:FAH
Superfamily:FAH
Family:FAH
73c5lc5G_



not modelled 49.0 22
PDB header:oxidoreductase
Chain: G: PDB Molecule:nadh-ubiquinone oxidoreductase 75 kda subunit,
PDBTitle: structure of mammalian respiratory complex i, class2
74c2djpA_



not modelled 47.2 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein sb145;
PDBTitle: the solution structure of the lysm domain of human2 hypothetical protein sb145
75d1eh9a2



not modelled 44.5 30
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
76c5anzA_



not modelled 44.0 23
PDB header:hydrolase
Chain: A: PDB Molecule:soluble lytic transglycosylase b3;
PDBTitle: crystal structure of sltb3 from pseudomonas aeruginosa.
77c6jvwA_



not modelled 43.9 13
PDB header:hydrolase
Chain: A: PDB Molecule:maleylpyruvate hydrolase;
PDBTitle: crystal structure of maleylpyruvate hydrolase from sphingobium sp.2 syk-6 in complex with manganese (ii) ion and pyruvate
78d3c8ya2



not modelled 41.5 10
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
79d1nr9a_



not modelled 41.5 16
Fold:FAH
Superfamily:FAH
Family:FAH
80c1fuiB_



not modelled 40.9 33
PDB header:isomerase
Chain: B: PDB Molecule:l-fucose isomerase;
PDBTitle: l-fucose isomerase from escherichia coli
81c4s3jC_



not modelled 40.4 16
PDB header:hydrolase
Chain: C: PDB Molecule:cortical-lytic enzyme;
PDBTitle: crystal structure of the bacillus cereus spore cortex-lytic enzyme2 slel
82c4nooA_



not modelled 40.2 46
PDB header:immune system
Chain: A: PDB Molecule:vgrg protein;
PDBTitle: molecular mechanism for self-protection against type vi secretion2 system in vibrio cholerae
83c5xf9F_



not modelled 39.2 17
PDB header:oxidoreductase
Chain: F: PDB Molecule:nad-reducing hydrogenase;
PDBTitle: crystal structure of nad+-reducing [nife]-hydrogenase in the air-2 oxidized state
84c3u7zA_



not modelled 37.4 22
PDB header:metal binding protein
Chain: A: PDB Molecule:putative metal binding protein rumgna_00854;
PDBTitle: crystal structure of a putative metal binding protein rumgna_008542 (zp_02040092.1) from ruminococcus gnavus atcc 29149 at 1.30 a3 resolution
85c1y7mB_



not modelled 34.5 9
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein bsu14040;
PDBTitle: crystal structure of the b. subtilis ykud protein at 2 a2 resolution
86c3csqC_



not modelled 33.2 17
PDB header:hydrolase
Chain: C: PDB Molecule:morphogenesis protein 1;
PDBTitle: crystal and cryoem structural studies of a cell wall2 degrading enzyme in the bacteriophage phi29 tail
87c5fimA_



not modelled 32.8 5
PDB header:unknown function
Chain: A: PDB Molecule:ygau;
PDBTitle: the structure of kbp.k from e. coli
88d1gtta1



not modelled 32.2 17
Fold:FAH
Superfamily:FAH
Family:FAH
89c5ldxG_



not modelled 32.0 24
PDB header:oxidoreductase
Chain: G: PDB Molecule:nadh-ubiquinone oxidoreductase 75 kda subunit,
PDBTitle: structure of mammalian respiratory complex i, class3.
90c5ldwG_



not modelled 32.0 24
PDB header:oxidoreductase
Chain: G: PDB Molecule:nadh-ubiquinone oxidoreductase 75 kda subunit,
PDBTitle: structure of mammalian respiratory complex i, class1
91d1nkqa_



not modelled 30.0 19
Fold:FAH
Superfamily:FAH
Family:FAH
92c5lnk3_



not modelled 29.8 22
PDB header:oxidoreductase
Chain: 3: PDB Molecule:mitochondrial complex i, 75 kda subunit;
PDBTitle: entire ovine respiratory complex i
93c3qdfA_



not modelled 29.3 21
PDB header:isomerase
Chain: A: PDB Molecule:2-hydroxyhepta-2,4-diene-1,7-dioate isomerase;
PDBTitle: crystal structure of 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase2 from mycobacterium marinum
94c1wzoC_



not modelled 29.2 19
PDB header:isomerase
Chain: C: PDB Molecule:hpce;
PDBTitle: crystal structure of the hpce from thermus thermophilus hb8
95c4maqB_



not modelled 28.9 15
PDB header:hydrolase
Chain: B: PDB Molecule:putative fumarylpyruvate hydrolase;
PDBTitle: crystal structure of a putative fumarylpyruvate hydrolase from2 burkholderia cenocepacia
96d2fug33



not modelled 27.3 28
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
97d1gtta2



not modelled 26.6 16
Fold:FAH
Superfamily:FAH
Family:FAH
98d1sv6a_



not modelled 25.8 11
Fold:FAH
Superfamily:FAH
Family:FAH
99c3s52A_



not modelled 25.7 15
PDB header:hydrolase
Chain: A: PDB Molecule:putative fumarylacetoacetate hydrolase family protein;
PDBTitle: crystal structure of a putative fumarylacetoacetate hydrolase family2 protein from yersinia pestis co92
100c3a9rA_



not modelled 22.7 32
PDB header:isomerase
Chain: A: PDB Molecule:d-arabinose isomerase;
PDBTitle: x-ray structures of bacillus pallidus d-arabinose2 isomerasecomplex with (4r)-2-methylpentane-2,4-diol
101c6gcsA_



not modelled 22.2 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:75-kda protein (nuam);
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
102c6iymB_



not modelled 22.0 23
PDB header:hydrolase
Chain: B: PDB Molecule:5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase;
PDBTitle: fumarylacetoacetate hydrolase (eafah) from psychrophilic2 exiguobacterium antarcticum
103c5j9hA_



not modelled 21.7 25
PDB header:viral protein
Chain: A: PDB Molecule:envelopment polyprotein;
PDBTitle: crystal structure of glycoprotein c from puumala virus in the post-2 fusion conformation (ph 8.0)

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