Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1046c_(-)_1168640_1169233
DateWed Jul 31 22:05:12 BST 2019
Unique Job ID549190cfb4369bc4
SequenceLKVQARVGWN ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:14.216 Y:9.950 Z:9.470
Model (left) based on template c5wknD_
Top template information
PDB header:viral protein
Chain: D: PDB Molecule:phosphoprotein;
PDBTitle: crystal structure of the parainfluenza virus 5 nucleoprotein-2 phosphoprotein complex
Confidence and coverage
Confidence: 17.2% Coverage: 3%
6 residues ( 3% of your sequence) have been modelled with 17.2% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Warning: 67% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5wknD_
17.2 100
PDB header:viral protein
Chain: D: PDB Molecule:phosphoprotein;
PDBTitle: crystal structure of the parainfluenza virus 5 nucleoprotein-2 phosphoprotein complex
2c5wknC_
16.6 100
PDB header:viral protein
Chain: C: PDB Molecule:phosphoprotein;
PDBTitle: crystal structure of the parainfluenza virus 5 nucleoprotein-2 phosphoprotein complex
3c1qcrI_
10.7 48
PDB header:oxidoreductase
Chain: I: PDB Molecule:ubiquinol cytochrome c oxidoreductase;
PDBTitle: crystal structure of bovine mitochondrial cytochrome bc12 complex, alpha carbon atoms only
4c4wlpB_
9.0 40
PDB header:protein binding
Chain: B: PDB Molecule:nuclear factor related to kappa-b-binding protein;
PDBTitle: crystal structure of uch37-nfrkb inhibited deubiquitylating complex
5c5ejoA_
7.4 33
PDB header:nuclear protein
Chain: A: PDB Molecule:chromatin assembly factor 1 subunit p90;
PDBTitle: crystal structure of the winged helix domain in chromatin assembly2 factor 1 subunit p90
6c3dkbA_
7.3 38
PDB header:hydrolase
Chain: A: PDB Molecule:tumor necrosis factor, alpha-induced protein 3;
PDBTitle: crystal structure of a20, 2.5 angstrom
7c5lrvA_
7.2 44
PDB header:hydrolase
Chain: A: PDB Molecule:otu domain-containing protein 7b;
PDBTitle: structure of cezanne/otud7b otu domain bound to lys11-linked2 diubiquitin
8c2vfjA_
5.7 38
PDB header:hydrolase
Chain: A: PDB Molecule:tumor necrosis factor;
PDBTitle: structure of the a20 ovarian tumour (otu) domain

Binding site prediction 

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