Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1171_(-)_1301312_1301752
DateWed Jul 31 22:05:25 BST 2019
Unique Job ID4314ef71f217effb
SequenceVGHRVDTLSD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:16.967 Y:32.082 Z:22.400
Model (left) based on template c1dsjA_
Top template information
PDB header:viral peptide
Chain: A: PDB Molecule:vpr protein;
PDBTitle: nmr solution structure of vpr50_75, 20 structures
Confidence and coverage
Confidence: 13.1% Coverage: 16%
23 residues ( 16% of your sequence) have been modelled with 13.1% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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3D viewing
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Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1dsjA_



13.1 22
PDB header:viral peptide
Chain: A: PDB Molecule:vpr protein;
PDBTitle: nmr solution structure of vpr50_75, 20 structures
2c6hwhB_



10.6 22
PDB header:electron transport
Chain: B: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
3c5z62N_



9.0 27
PDB header:electron transport
Chain: N: PDB Molecule:cytochrome c oxidase subunit ndufa4;
PDBTitle: structure of human cytochrome c oxidase
4c4e18B_



9.0 53
PDB header:cell adhesion
Chain: B: PDB Molecule:catenin alpha-1;
PDBTitle: alpha-e-catenin is an autoinhibited molecule that co-activates2 vinculin
5c2yevC_



5.7 28
PDB header:electron transport
Chain: C: PDB Molecule:caa3-type cytochrome oxidase subunit iv;
PDBTitle: structure of caa3-type cytochrome oxidase

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below