Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1271c_(-)_1419967_1420308
DateWed Jul 31 22:05:36 BST 2019
Unique Job IDc229fa9a2ebf105d
SequenceMLSPLSPRII ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:28.240 Y:33.951 Z:30.744
Model (left) based on template c6c3rB_
Top template information
PDB header:viral protein
Chain: B: PDB Molecule:cricket paralysis virus 1a protein;
PDBTitle: cricket paralysis virus rnai suppressor protein crpv-1a
Confidence and coverage
Confidence: 37.1% Coverage: 38%
43 residues ( 38% of your sequence) have been modelled with 37.1% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6c3rB_



37.1 14
PDB header:viral protein
Chain: B: PDB Molecule:cricket paralysis virus 1a protein;
PDBTitle: cricket paralysis virus rnai suppressor protein crpv-1a
2d2csua3



33.1 19
Fold:Flavodoxin-like
Superfamily:Succinyl-CoA synthetase domains
Family:Succinyl-CoA synthetase domains
3c3pvsA_



27.3 17
PDB header:recombination
Chain: A: PDB Molecule:replication-associated recombination protein a;
PDBTitle: structure and biochemical activities of escherichia coli mgsa
4c5uqdA_



20.2 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:dumpy: shorter than wild-type;
PDBTitle: dpy-21 in complex with fe(ii) and alpha-ketoglutarate
5d2j9ga2



19.3 22
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
6c1vjqB_



17.8 20
PDB header:structural genomics, de novo protein
Chain: B: PDB Molecule:designed protein;
PDBTitle: designed protein based on backbone conformation of2 procarboxypeptidase-a (1aye) with sidechains chosen for maximal3 predicted stability.
7c4rl6A_



17.5 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:saccharopine dehydrogenase;
PDBTitle: crystal structure of the q04l03_strp2 protein from streptococcus2 pneumoniae. northeast structural genomics consortium target spr105
8d1mkea1



17.4 17
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Enabled/VASP homology 1 domain (EVH1 domain)
9d1yqga1



16.8 14
Fold:6-phosphogluconate dehydrogenase C-terminal domain-like
Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like
Family:ProC C-terminal domain-like
10c2ekcA_



16.2 26
PDB header:lyase
Chain: A: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: structural study of project id aq_1548 from aquifex aeolicus vf5
11c3g2bA_



13.8 11
PDB header:biosynthetic protein
Chain: A: PDB Molecule:coenzyme pqq synthesis protein d;
PDBTitle: crystal structure of pqqd from xanthomonas campestris
12c5k9xA_



12.3 24
PDB header:lyase
Chain: A: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: crystal structure of tryptophan synthase alpha chain from legionella2 pneumophila subsp. pneumophila
13c3ss4C_



12.2 38
PDB header:hydrolase
Chain: C: PDB Molecule:glutaminase c;
PDBTitle: crystal structure of mouse glutaminase c, phosphate-bound form
14c6g2dC_



11.8 13
PDB header:ligase
Chain: C: PDB Molecule:acetyl-coa carboxylase 1;
PDBTitle: citrate-induced acetyl-coa carboxylase (acc-cit) filament at 5.4 a2 resolution
15c5dggB_



11.3 27
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: central domain of uncharacterized lpg1148 protein from legionella2 pneumophila
16c4inaA_



11.0 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:saccharopine dehydrogenase;
PDBTitle: crystal structure of the q7mss8_wolsu protein from wolinella2 succinogenes. northeast structural genomics consortium target wsr35
17c6jx3B_



10.8 19
PDB header:peptide binding protein
Chain: B: PDB Molecule:tfub1;
PDBTitle: lasso peptide synthetase b1 complexed with the leader peptide
18c2lweA_



10.6 20
PDB header:signaling protein
Chain: A: PDB Molecule:probable atp-dependent rna helicase ddx58;
PDBTitle: solution structure of mutant (t170e) second card of human rig-i
19c5v1uB_



10.4 11
PDB header:protein binding
Chain: B: PDB Molecule:tbib1;
PDBTitle: tbib1 in complex with the tbia(beta) leader peptide
20c2jd3B_



10.2 11
PDB header:dna binding protein
Chain: B: PDB Molecule:stbb protein;
PDBTitle: parr from plasmid pb171
21d2ahra1



not modelled 10.2 16
Fold:6-phosphogluconate dehydrogenase C-terminal domain-like
Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like
Family:ProC C-terminal domain-like
22c2n2aA_



not modelled 9.6 29
PDB header:membrane protein
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: spatial structure of her2/erbb2 dimeric transmembrane domain in the2 presence of cytoplasmic juxtamembrane domains
23d1ulza2



not modelled 9.5 22
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
24d1ca1a1



not modelled 9.4 24
Fold:Phospholipase C/P1 nuclease
Superfamily:Phospholipase C/P1 nuclease
Family:Phospholipase C
25c2kktA_



not modelled 9.2 50
PDB header:transcription
Chain: A: PDB Molecule:ataxin-7-like protein 3;
PDBTitle: solution structure of the sca7 domain of human ataxin-7-l3 protein
26d3ctda1



not modelled 9.1 20
Fold:post-AAA+ oligomerization domain-like
Superfamily:post-AAA+ oligomerization domain-like
Family:MgsA/YrvN C-terminal domain-like
27c2ifsA_



not modelled 9.0 17
PDB header:signaling protein
Chain: A: PDB Molecule:wiskott-aldrich syndrome protien interacting protein and
PDBTitle: structure of the n-wasp evh1 domain in complex with an extended wip2 peptide
28c4yajA_



not modelled 8.7 7
PDB header:ligase
Chain: A: PDB Molecule:alpha subunit of acetyl-coenzyme a synthetase
PDBTitle: ca. korarchaeum cryptofilum dinucleotide forming acetyl-coenzyme a2 synthetase 1 (apo form)
29c3uo9B_



not modelled 7.9 38
PDB header:hydrolase/hydrolase inhibitor
Chain: B: PDB Molecule:glutaminase kidney isoform, mitochondrial;
PDBTitle: crystal structure of human gac in complex with glutamate and bptes
30c5uqeB_



not modelled 7.5 38
PDB header:hydrolase
Chain: B: PDB Molecule:glutaminase kidney isoform, mitochondrial;
PDBTitle: multidomain structure of human kidney-type glutaminase(kga/gls)
31c2l5yA_



not modelled 7.4 15
PDB header:signaling protein
Chain: A: PDB Molecule:stromal interaction molecule 2;
PDBTitle: nmr structure of calcium-loaded stim2 ef-sam.
32c5sxyA_



not modelled 7.3 17
PDB header:chaperone
Chain: A: PDB Molecule:bifunctional coenzyme pqq synthesis protein c/d;
PDBTitle: the solution nmr structure for the pqqd truncation of methylobacterium2 extorquens pqqcd representing a functional and stand-alone3 ribosomally synthesized and post-translational modified (ripp)4 recognition element (rre)
33d1xoda1



not modelled 7.0 27
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Enabled/VASP homology 1 domain (EVH1 domain)
34c4pu4C_



not modelled 7.0 21
PDB header:toxin/antitoxin/dna
Chain: C: PDB Molecule:toxin-antitoxin system antidote transcriptional repressor
PDBTitle: shewanella oneidensis mr-1 toxin antitoxin system hipa, hipb and its2 operator dna complex (space group p21)
35d1eucb1



not modelled 6.9 11
Fold:Flavodoxin-like
Superfamily:Succinyl-CoA synthetase domains
Family:Succinyl-CoA synthetase domains
36c3ctdB_



not modelled 6.8 22
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative atpase, aaa family;
PDBTitle: crystal structure of a putative aaa family atpase from prochlorococcus2 marinus subsp. pastoris
37d1w2za3



not modelled 6.8 28
Fold:Cystatin-like
Superfamily:Amine oxidase N-terminal region
Family:Amine oxidase N-terminal region
38c5us3A_



not modelled 6.3 75
PDB header:de novo protein
Chain: A: PDB Molecule:heterogeneous-backbone variant of the sp1-3 zinc finger: n-
PDBTitle: heterogeneous-backbone foldamer mimic of the sp1-3 zinc finger
39d1n81a_



not modelled 6.2 67
Fold:Gametocyte protein Pfg27
Superfamily:Gametocyte protein Pfg27
Family:Gametocyte protein Pfg27
40c5kinC_



not modelled 6.1 29
PDB header:lyase
Chain: C: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: crystal structure of tryptophan synthase alpha beta complex from2 streptococcus pneumoniae
41c3f6wE_



not modelled 6.0 17
PDB header:dna binding protein
Chain: E: PDB Molecule:xre-family like protein;
PDBTitle: xre-family like protein from pseudomonas syringae pv. tomato str.2 dc3000
42d2r9ga1



not modelled 5.9 21
Fold:post-AAA+ oligomerization domain-like
Superfamily:post-AAA+ oligomerization domain-like
Family:MgsA/YrvN C-terminal domain-like
43d1d6za3



not modelled 5.8 33
Fold:Cystatin-like
Superfamily:Amine oxidase N-terminal region
Family:Amine oxidase N-terminal region
44c5kzmA_



not modelled 5.7 29
PDB header:lyase
Chain: A: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: crystal structure of tryptophan synthase alpha-beta chain complex from2 francisella tularensis
45d1u1sa1



not modelled 5.7 8
Fold:Sm-like fold
Superfamily:Sm-like ribonucleoproteins
Family:Pleiotropic translational regulator Hfq
46c4v19S_



not modelled 5.6 24
PDB header:ribosome
Chain: S: PDB Molecule:mitoribosomal protein ul18m, mrpl18;
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 12 of 2
47d1khoa1



not modelled 5.6 28
Fold:Phospholipase C/P1 nuclease
Superfamily:Phospholipase C/P1 nuclease
Family:Phospholipase C
48c2ppxA_



not modelled 5.4 8
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein atu1735;
PDBTitle: crystal structure of a hth xre-family like protein from agrobacterium2 tumefaciens
49d2ppxa1



not modelled 5.4 8
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
50d1bbua1



not modelled 5.4 23
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Anticodon-binding domain
51d1hk9a_



not modelled 5.4 15
Fold:Sm-like fold
Superfamily:Sm-like ribonucleoproteins
Family:Pleiotropic translational regulator Hfq
52c6driA_



not modelled 5.4 50
PDB header:immune system
Chain: A: PDB Molecule:acan1;
PDBTitle: nmr solution structure of acan1 from the ancylostoma caninum hookworm
53d1kq1a_



not modelled 5.3 0
Fold:Sm-like fold
Superfamily:Sm-like ribonucleoproteins
Family:Pleiotropic translational regulator Hfq
54c2gacD_



not modelled 5.3 20
PDB header:hydrolase
Chain: D: PDB Molecule:glycosylasparaginase;
PDBTitle: t152c mutant glycosylasparaginase from flavobacterium2 meningosepticum
55c3cjlA_



not modelled 5.3 26
PDB header:unknown function
Chain: A: PDB Molecule:domain of unknown function;
PDBTitle: crystal structure of a protein of unknown function (eca1910) from2 pectobacterium atrosepticum scri1043 at 2.20 a resolution
56d3bgea1



not modelled 5.2 18
Fold:post-AAA+ oligomerization domain-like
Superfamily:post-AAA+ oligomerization domain-like
Family:MgsA/YrvN C-terminal domain-like

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below