Phyre 2 Results for RVBD1401_(-)_1576936

Email	mdejesus@rockefeller.edu
Description	RVBD1401_(-)_1576936_1577538
Date	Wed Jul 31 22:05:50 BST 2019
Unique Job ID	691660000804b16e
Sequence	MLQPAFKASM ... Download FASTA
Job Type	normal
Job Expiry

Summary

Top model

Image coloured by rainbow N → C terminus

Model dimensions (Å):

X:14.130 Y:8.412 Z:11.738

Model (left) based on template c2pm7A_

Top template information

PDB header:protein transport
Chain: A: PDB Molecule:protein transport protein sec31;
PDBTitle: crystal structure of yeast sec13/31 edge element of the copii2 vesicular coat, selenomethionine version

Confidence and coverage

Confidence:

13.4%

Coverage:

8 residues ( 4% of your sequence) have been modelled with 13.4% confidence by the single highest scoring template.

You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.

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3D viewing

Interactive 3D view in JSmol

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Sequence analysis

Download FASTA version

Secondary structure and disorder prediction [Show]

Domain analysis [Show]

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence	M	L	Q	P	A	F	K	A	S	M	A	V	L	L	A	A	A	A	V	A	H	P	I	G	R	E	R	R	W	L	V	P	A	L	L	L	S	A	T	G	D	W	L	L	A	I	P	W	W	T	W	A	F	V	F	G	L	G	A	F
Secondary structure
SS confidence
Disorder	?	?																		?	?
Disorder confidence

	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence	L	L	A	H	L	C	F	I	G	A	L	L	P	L	A	R	Q	A	A	P	S	R	G	R	V	A	A	V	V	A	M	C	V	A	S	A	G	L	L	V	W	F	W	P	H	L	G	K	D	N	L	T	I	P	V	T	V	Y	I	V
Secondary structure
SS confidence
Disorder													?	?	?	?	?	?	?	?		?
Disorder confidence

	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence	A	L	S	A	M	V	C	T	A	L	L	A	R	L	P	T	I	W	T	A	V	G	A	V	C	F	A	A	S	D	S	M	I	G	I	G	R	F	I	L	G	N	E	A	L	A	V	P	I	W	W	S	Y	A	A	A	E	I	L	I
Secondary structure
SS confidence
Disorder												?			?	?
Disorder confidence

	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Sequence	T	A	G	F	F	F	G	R	E	V	P	D	N	A	A	A	P	T	D	S
Secondary structure
SS confidence
Disorder					?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

PDB 2pm7 chain A

PDB 2knc chain A

PDB 3mzl chain H