Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1966_(mce3A)_2209335_2210612
DateMon Aug 5 13:25:06 BST 2019
Unique Job ID18008c7547b1f3f9
SequenceMRRGPGRHRL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:48.168 Y:37.684 Z:66.626
Model (left) based on template c6ic4C_
Top template information
PDB header:protein transport
Chain: C: PDB Molecule:toluene tolerance efflux transporter (abc superfamily,
PDBTitle: cryo-em structure of the a. baumannii mla complex at 8.7 a resolution
Confidence and coverage
Confidence: 99.9% Coverage: 32%
135 residues ( 32% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
294 residues ( 69%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6ic4C_



99.9 17
PDB header:protein transport
Chain: C: PDB Molecule:toluene tolerance efflux transporter (abc superfamily,
PDBTitle: cryo-em structure of the a. baumannii mla complex at 8.7 a resolution
2c5uw8C_



99.7 23
PDB header:transport protein
Chain: C: PDB Molecule:probable phospholipid abc transporter-binding protein mlad;
PDBTitle: structure of e. coli mce protein mlad, core mce domain
3c5uvnF_



99.5 18
PDB header:transport protein
Chain: F: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
4c5uvnE_



99.5 18
PDB header:transport protein
Chain: E: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
5c5uvnC_



99.5 18
PDB header:transport protein
Chain: C: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
6c5uvnA_



99.5 18
PDB header:transport protein
Chain: A: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
7c5uvnB_



99.5 18
PDB header:transport protein
Chain: B: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
8c5uvnD_



99.5 18
PDB header:transport protein
Chain: D: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
9c3g67A_



94.5 7
PDB header:signaling protein
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein;
PDBTitle: crystal structure of a soluble chemoreceptor from thermotoga2 maritima
10c1qu7A_



88.2 9
PDB header:signaling protein
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein i;
PDBTitle: four helical-bundle structure of the cytoplasmic domain of a serine2 chemotaxis receptor
11c5szsC_



80.8 15
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: glycan shield and epitope masking of a coronavirus spike protein2 observed by cryo-electron microscopy
12c6b7nC_



79.6 14
PDB header:viral protein
Chain: C: PDB Molecule:spike protein;
PDBTitle: cryo-electron microscopy structure of porcine delta coronavirus spike2 protein in the pre-fusion state
13c3lnrA_



69.7 8
PDB header:signaling protein
Chain: A: PDB Molecule:aerotaxis transducer aer2;
PDBTitle: crystal structure of poly-hamp domains from the p. aeruginosa soluble2 receptor aer2
14c2ch7A_



67.9 12
PDB header:chemotaxis
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein;
PDBTitle: crystal structure of the cytoplasmic domain of a bacterial2 chemoreceptor from thermotoga maritima
15c4n21E_



62.3 15
PDB header:viral protein
Chain: E: PDB Molecule:gp2 ectodomain;
PDBTitle: crystal structure of the gp2 core domain from the california academy2 of science virus
16c6gajA_



60.3 13
PDB header:viral protein
Chain: A: PDB Molecule:outer capsid protein sigma-1;
PDBTitle: crystal structure of the t1l reovirus sigma1 coiled coil tail (iodide)
17c1kmiZ_



60.0 17
PDB header:signaling protein
Chain: Z: PDB Molecule:chemotaxis protein chez;
PDBTitle: crystal structure of an e.coli chemotaxis protein, chez
18c3cwgA_



58.3 8
PDB header:transcription
Chain: A: PDB Molecule:signal transducer and activator of transcription
PDBTitle: unphosphorylated mouse stat3 core fragment
19d1st6a4



57.4 16
Fold:Four-helical up-and-down bundle
Superfamily:alpha-catenin/vinculin-like
Family:alpha-catenin/vinculin
20c4hw9E_



57.1 16
PDB header:membrane protein
Chain: E: PDB Molecule:mechanosensitive channel mscs;
PDBTitle: crystal structure of helicobacter pylori mscs (closed state)
21c6cs2A_



not modelled 55.8 13
PDB header:viral protein/hydrolase
Chain: A: PDB Molecule:spike glycoprotein,fibritin;
PDBTitle: sars spike glycoprotein - human ace2 complex, stabilized variant, all2 ace2-bound particles
22c2kbbA_



not modelled 55.4 18
PDB header:structural protein
Chain: A: PDB Molecule:talin-1;
PDBTitle: nmr structure of the talin rod domain, 1655-1822
23c6nb3B_



not modelled 55.1 18
PDB header:virus
Chain: B: PDB Molecule:spike glycoprotein;
PDBTitle: mers-cov complex with human neutralizing lca60 antibody fab fragment2 (state 1)
24c2qihA_



not modelled 54.5 12
PDB header:cell adhesion
Chain: A: PDB Molecule:protein uspa1;
PDBTitle: crystal structure of 527-665 fragment of uspa1 protein from moraxella2 catarrhalis
25c3t9nG_



not modelled 53.3 19
PDB header:membrane protein
Chain: G: PDB Molecule:small-conductance mechanosensitive channel;
PDBTitle: crystal structure of a membrane protein
26c6cv0C_



not modelled 52.6 16
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: cryo-electron microscopy structure of infectious bronchitis2 coronavirus spike protein
27c4rh7A_



not modelled 49.4 11
PDB header:motor protein
Chain: A: PDB Molecule:green fluorescent protein/cytoplasmic dynein 2 heavy chain
PDBTitle: crystal structure of human cytoplasmic dynein 2 motor domain in2 complex with adp.vi
28c6nzkB_



not modelled 48.0 18
PDB header:viral protein
Chain: B: PDB Molecule:spike surface glycoprotein;
PDBTitle: structural basis for human coronavirus attachment to sialic acid2 receptors
29c5xbjA_



not modelled 47.5 16
PDB header:biosynthetic protein
Chain: A: PDB Molecule:flagellar hook-associated protein flgk;
PDBTitle: the structure of the flagellar hook junction protein hap1 (flgk) from2 campylobacter jejuni
30d1ykhb1



not modelled 47.4 6
Fold:Mediator hinge subcomplex-like
Superfamily:Mediator hinge subcomplex-like
Family:CSE2-like
31c5zuvB_



not modelled 47.2 24
PDB header:viral protein, inhibitor
Chain: B: PDB Molecule:spike glycoprotein,spike glycoprotein,inhibitor ek1;
PDBTitle: crystal structure of the human coronavirus 229e hr1 motif in complex2 with pan-covs inhibitor ek1
32c5u0pU_



not modelled 44.7 8
PDB header:transcription
Chain: U: PDB Molecule:mediator complex subunit 21;
PDBTitle: cryo-em structure of the transcriptional mediator
33c3ok8A_



not modelled 44.4 9
PDB header:protein binding
Chain: A: PDB Molecule:brain-specific angiogenesis inhibitor 1-associated protein
PDBTitle: i-bar of pinkbar
34c3zx6A_



not modelled 44.2 7
PDB header:signaling
Chain: A: PDB Molecule:hamp, methyl-accepting chemotaxis protein i;
PDBTitle: structure of hamp(af1503)-tsr fusion - hamp (a291v) mutant
35c5x5fC_



not modelled 43.5 18
PDB header:viral protein
Chain: C: PDB Molecule:s protein;
PDBTitle: prefusion structure of mers-cov spike glycoprotein, conformation 2
36c3vkhA_



not modelled 43.4 10
PDB header:motor protein
Chain: A: PDB Molecule:dynein heavy chain, cytoplasmic;
PDBTitle: x-ray structure of a functional full-length dynein motor domain
37c5zhyA_



not modelled 43.0 10
PDB header:viral protein
Chain: A: PDB Molecule:spike glycoprotein, spike glycoprotein;
PDBTitle: structural characterization of the hcov-229e fusion core
38c5wrgB_



not modelled 42.2 16
PDB header:virus like particle
Chain: B: PDB Molecule:spike glycoprotein;
PDBTitle: sars-cov spike glycoprotein
39c4abxB_



not modelled 40.5 11
PDB header:dna binding protein
Chain: B: PDB Molecule:dna repair protein recn;
PDBTitle: crystal structure of deinococcus radiodurans recn coiled-2 coil domain
40c5i08A_



not modelled 39.8 15
PDB header:viral protein
Chain: A: PDB Molecule:spike glycoprotein, envelope glycoprotein chimera;
PDBTitle: prefusion structure of a human coronavirus spike protein
41c2wpqA_



not modelled 39.3 12
PDB header:membrane protein
Chain: A: PDB Molecule:trimeric autotransporter adhesin fragment;
PDBTitle: salmonella enterica sada 479-519 fused to gcn4 adaptors (sadak3, in-2 register fusion)
42c5n77A_



not modelled 39.1 12
PDB header:transport protein
Chain: A: PDB Molecule:magnesium transport protein cora;
PDBTitle: crystal structure of the cytosolic domain of the cora magnesium2 channel from escherichia coli in complex with magnesium
43c3jclC_



not modelled 37.8 20
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: cryo-electron microscopy structure of a coronavirus spike glycoprotein2 trimer
44c2ieqC_



not modelled 37.7 15
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: core structure of s2 from the human coronavirus nl63 spike2 glycoprotein
45c6b3oB_



not modelled 35.3 22
PDB header:viral protein
Chain: B: PDB Molecule:spike glycoprotein;
PDBTitle: tectonic conformational changes of a coronavirus spike glycoprotein2 promote membrane fusion
46c5x5bB_



not modelled 33.7 11
PDB header:viral protein
Chain: B: PDB Molecule:spike glycoprotein;
PDBTitle: prefusion structure of sars-cov spike glycoprotein, conformation 2
47c1wyyB_



not modelled 33.7 13
PDB header:viral protein
Chain: B: PDB Molecule:e2 glycoprotein;
PDBTitle: post-fusion hairpin conformation of the sars coronavirus spike2 glycoprotein
48c2qf4A_



not modelled 33.6 22
PDB header:structural protein
Chain: A: PDB Molecule:cell shape determining protein mrec;
PDBTitle: high resolution structure of the major periplasmic domain from the2 cell shape-determining filament mrec (orthorhombic form)
49c5xlrC_



not modelled 33.4 13
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: structure of sars-cov spike glycoprotein
50c4e40A_



not modelled 33.2 8
PDB header:transport protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: the haptoglobin-hemoglobin receptor of trypanosoma congolense
51c4njlA_



not modelled 32.4 13
PDB header:viral protein
Chain: A: PDB Molecule:s protein;
PDBTitle: crystal structure of middle east respiratory syndrome coronavirus s22 protein fusion core
52c2vv5D_



not modelled 32.1 23
PDB header:membrane protein
Chain: D: PDB Molecule:small-conductance mechanosensitive channel;
PDBTitle: the open structure of mscs
53c4wsrA_



not modelled 31.3 13
PDB header:viral protein
Chain: A: PDB Molecule:hemagglutinin;
PDBTitle: the crystal structure of hemagglutinin form a/chicken/new york/14677-2 13/1998
54d1g4us1



not modelled 30.8 11
Fold:Four-helical up-and-down bundle
Superfamily:Bacterial GAP domain
Family:Bacterial GAP domain
55c2vs0B_



not modelled 30.8 14
PDB header:cell invasion
Chain: B: PDB Molecule:virulence factor esxa;
PDBTitle: structural analysis of homodimeric staphylococcal aureus2 virulence factor esxa
56c3gvmA_



not modelled 29.7 11
PDB header:viral protein
Chain: A: PDB Molecule:putative uncharacterized protein sag1039;
PDBTitle: structure of the homodimeric wxg-100 family protein from streptococcus2 agalactiae
57c6e6aB_



not modelled 29.2 10
PDB header:protein binding
Chain: B: PDB Molecule:inclusion membrane protein a;
PDBTitle: triclinic crystal form of inca g144a point mutant
58c3j6vL_



not modelled 28.0 18
PDB header:ribosome
Chain: L: PDB Molecule:28s ribosomal protein s12, mitochondrial;
PDBTitle: cryo-em structure of the small subunit of the mammalian mitochondrial2 ribosome
59c5lp5F_



not modelled 27.4 38
PDB header:hydrolase/antibiotic
Chain: F: PDB Molecule:rod shape-determining protein (mrec);
PDBTitle: complex between penicillin-binding protein (pbp2) and mrec from2 helicobacter pylori
60c1zn1L_



not modelled 26.4 26
PDB header:biosynthetic/structural protein/rna
Chain: L: PDB Molecule:30s ribosomal protein s12;
PDBTitle: coordinates of rrf fitted into cryo-em map of the 70s post-termination2 complex
61d1eq1a_



not modelled 26.3 12
Fold:Apolipophorin-III
Superfamily:Apolipophorin-III
Family:Apolipophorin-III
62d2uubl1



not modelled 26.1 32
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
63c5zkgB_



not modelled 25.9 15
PDB header:ligase
Chain: B: PDB Molecule:aminoacyl-trna synthetase-interacting multifunctional
PDBTitle: crystal structure of c-terminal domain of plasmodium vivax p43
64c1deqF_



not modelled 24.7 8
PDB header:blood clotting
Chain: F: PDB Molecule:fibrinogen (gamma chain);
PDBTitle: the crystal structure of modified bovine fibrinogen (at ~42 angstrom resolution)
65c6qajB_



not modelled 23.8 4
PDB header:nuclear protein
Chain: B: PDB Molecule:endolysin,transcription intermediary factor 1-beta;
PDBTitle: structure of the tripartite motif of kap1/trim28
66c1ei3E_



not modelled 22.8 13
PDB header:blood clotting
Chain: E: PDB Molecule:fibrinogen;
PDBTitle: crystal structure of native chicken fibrinogen
67c5xauD_



not modelled 22.8 18
PDB header:cell adhesion
Chain: D: PDB Molecule:laminin subunit alpha-5;
PDBTitle: crystal structure of integrin binding fragment of laminin-511
68c4mc5C_



not modelled 22.2 10
PDB header:viral protein
Chain: C: PDB Molecule:hemagglutinin;
PDBTitle: crystal structure of a subtype h18 hemagglutinin homologue from2 a/flat-faced bat/peru/033/2010 (h18n11)
69c2yfaA_



not modelled 20.6 10
PDB header:receptor
Chain: A: PDB Molecule:methyl-accepting chemotaxis transducer;
PDBTitle: x-ray structure of mcps ligand binding domain in complex with malate
70d2qall1



not modelled 20.6 26
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
71c2l81A_



not modelled 19.6 10
PDB header:cell adhesion
Chain: A: PDB Molecule:enhancer of filamentation 1;
PDBTitle: solution nmr structure of the serine-rich domain of hef1 (enhancer of2 filamentation 1) from homo sapiens, northeast structural genomics3 consortium target hr5554a
72d1ntga_



not modelled 18.4 11
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Myf domain
73c2j9wB_



not modelled 17.9 11
PDB header:protein transport
Chain: B: PDB Molecule:vps28-prov protein;
PDBTitle: structural insight into the escrt-i-ii link and its role in mvb2 trafficking
74d1i94l_



not modelled 17.9 32
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
75c1deqO_



not modelled 17.9 12
PDB header:blood clotting
Chain: O: PDB Molecule:fibrinogen (beta chain);
PDBTitle: the crystal structure of modified bovine fibrinogen (at ~42 angstrom resolution)
76c4fiuC_



not modelled 17.3 17
PDB header:viral protein
Chain: C: PDB Molecule:hemagglutinin;
PDBTitle: the structure of hemagglutinin of h16 subtype influenza virus with2 v327g mutation
77d1hcia4



not modelled 16.6 3
Fold:Spectrin repeat-like
Superfamily:Spectrin repeat
Family:Spectrin repeat
78c5y4oA_



not modelled 16.4 24
PDB header:membrane protein
Chain: A: PDB Molecule:low conductance mechanosensitive channel ynai;
PDBTitle: cryo-em structure of mscs channel, ynai
79c1ha0A_



not modelled 16.2 14
PDB header:viral protein
Chain: A: PDB Molecule:protein (hemagglutinin precursor);
PDBTitle: hemagglutinin precursor ha0
80d1g7oa1



not modelled 16.1 9
Fold:GST C-terminal domain-like
Superfamily:GST C-terminal domain-like
Family:Glutathione S-transferase (GST), C-terminal domain
81c2kg7B_



not modelled 16.1 13
PDB header:unknown function
Chain: B: PDB Molecule:esat-6-like protein esxh;
PDBTitle: structure and features of the complex formed by the tuberculosis2 virulence factors rv0287 and rv0288
82d1fl0a_



not modelled 15.9 7
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Myf domain
83c4iogD_



not modelled 15.9 10
PDB header:unknown function
Chain: D: PDB Molecule:secreted protein esxb;
PDBTitle: the crystal structure of a secreted protein esxb (wild-type, in p212 space group) from bacillus anthracis str. sterne
84d1oxza_



not modelled 15.6 11
Fold:Spectrin repeat-like
Superfamily:GAT-like domain
Family:GAT domain
85c1oxzA_



not modelled 15.6 11
PDB header:membrane protein
Chain: A: PDB Molecule:adp-ribosylation factor binding protein gga1;
PDBTitle: crystal structure of the human gga1 gat domain
86c6ezvX_



not modelled 15.4 12
PDB header:toxin
Chain: X: PDB Molecule:non-hemolytic enterotoxin lytic component l1;
PDBTitle: the cytotoxin maka from vibrio cholerae
87c3bt6B_



not modelled 15.2 17
PDB header:viral protein
Chain: B: PDB Molecule:influenza b hemagglutinin (ha);
PDBTitle: crystal structure of influenza b virus hemagglutinin
88c4ut1A_



not modelled 15.2 13
PDB header:motor protein
Chain: A: PDB Molecule:flagellar hook-associated protein;
PDBTitle: the structure of the flagellar hook junction protein flgk2 from burkholderia pseudomallei
89c2bezC_



not modelled 15.1 14
PDB header:viral protein
Chain: C: PDB Molecule:e2 glycoprotein;
PDBTitle: structure of a proteolitically resistant core from the severe acute2 respiratory syndrome coronavirus s2 fusion protein
90c2d4yA_



not modelled 14.4 10
PDB header:structural protein
Chain: A: PDB Molecule:flagellar hook-associated protein 1;
PDBTitle: crystal structure of a 49k fragment of hap1 (flgk)
91c2v75A_



not modelled 14.3 16
PDB header:nuclear protein
Chain: A: PDB Molecule:nuclear polyadenylated rna-binding protein nab2;
PDBTitle: n-terminal domain of nab2
92c2gl2B_



not modelled 14.3 9
PDB header:cell adhesion
Chain: B: PDB Molecule:adhesion a;
PDBTitle: crystal structure of the tetra muntant (t66g,r67g,f68g,y69g) of2 bacterial adhesin fada
93d1szia_



not modelled 13.8 12
Fold:Four-helical up-and-down bundle
Superfamily:Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain
Family:Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain
94c2idxA_



not modelled 13.2 13
PDB header:transferase
Chain: A: PDB Molecule:cob(i)yrinic acid a,c-diamide adenosyltransferase;
PDBTitle: structure of human atp:cobalamin adenosyltransferase bound to atp.
95c6j9rA_



not modelled 13.2 13
PDB header:translation
Chain: A: PDB Molecule:brain tumor protein;
PDBTitle: coiled-coil domain of drosophila trim protein brat
96c3ur1C_



not modelled 13.1 19
PDB header:immune system
Chain: C: PDB Molecule:methyl-accepting chemotaxis protein;
PDBTitle: the structure of a ternary complex between chea domains p4 and p5 with2 chew and with a truncated fragment of tm14, a chemoreceptor analog3 from thermotoga maritima.
97c5gasN_



not modelled 13.0 7
PDB header:hydrolase
Chain: N: PDB Molecule:archaeal/vacuolar-type h+-atpase subunit i;
PDBTitle: thermus thermophilus v/a-atpase, conformation 2
98c4tkoB_



not modelled 13.0 15
PDB header:membrane protein
Chain: B: PDB Molecule:emra;
PDBTitle: structure of the periplasmic adaptor protein emra
99d2j9ua1



not modelled 12.4 14
Fold:Four-helical up-and-down bundle
Superfamily:VPS28 C-terminal domain-like
Family:VPS28 C-terminal domain-like

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below