Phyre 2 Results for RVBD1983_(PE_PGRS35)_2226252

Email	mdejesus@rockefeller.edu
Description	RVBD1983_(PE_PGRS35)_2226252_2227928
Date	Mon Aug 5 13:25:08 BST 2019
Unique Job ID	d75a842f707c3c62
Sequence	VSFLVVVPEF ... Download FASTA
Job Type	normal
Job Expiry

Summary

Top model

Image coloured by rainbow N → C terminus

Model dimensions (Å):

X:40.855 Y:35.740 Z:53.963

Model (left) based on template c5xfsA_

Top template information

PDB header:protein transport
Chain: A: PDB Molecule:pe family protein pe8;
PDBTitle: crystal structure of pe8-ppe15 in complex with espg5 from m.2 tuberculosis

Confidence and coverage

Confidence:

96.0%

Coverage:

14%

78 residues ( 14% of your sequence) have been modelled with 96.0% confidence by the single highest scoring template.

You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.

3D viewing

Interactive 3D view in JSmol

For other options to view your downloaded structure offline see the FAQ

Sequence analysis

Download FASTA version

Secondary structure and disorder prediction [Show]

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60

Sequence V S F L V V V P E F L T S A A A D V E N I G S T L R A A N A A A A A S T T A L A A A G A D E V S A A V A A L F A R F G Q

Secondary structure

SS confidence

Disorder ? ? ?
? ? ?
? ? ? ? ? ? ? ?
?

Disorder confidence

. . . . . . . . . 70 . . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120

Sequence E Y Q A V S A Q A S A F H Q Q F V Q T L N S A S G S Y A A A E A T I A S Q L Q T A Q H D L L G A V N A P T E T L L G R P

Secondary structure

SS confidence

Disorder
? ?
? ? ? ? ?
?
? ? ? ? ? ? ? ?
? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 130 . . . . . . . . . 140 . . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180

Sequence L I G D G A P G T A T S P N G G A G G L L Y G N G G N G Y S A T A S G V G G G A G G S A G L I G N G G A G G A G G P N A

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210 . . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240

Sequence P G G A G G N G G W L L G N G G I G G P G G A S S I P G M S G G A G G T G G A A G L L G W G A N G G A G G L G D G V G V

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ?
?
? ? ? ?
? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
?

Disorder confidence

. . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280 . . . . . . . . . 290 . . . . . . . . . 300

Sequence D R G T G G A G G R G G L L Y G G Y G V S G P G G D G R T V P L E I I H V T E P T V H A N V N G G P T S T I L V D T G S

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ?
?
?
?
?
? ? ? ? ?
?

Disorder confidence

. . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350 . . . . . . . . . 360

Sequence A G L V V S P E D V G G I L G V L H M G L P T G L S I S G Y S G G L Y Y I F A T Y T T T V D F G N G I V T A P T A V N V

Secondary structure

SS confidence

Disorder
? ? ?
?
? ? ? ? ? ? ? ? ? ?
?
? ? ?
?

Disorder confidence

. . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence V L L S I P T S P F A I S T Y F S A L L A D P T T T P F E A Y F G A V G V D G V L G V G P N A V G P G P S I P T M A L P

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ?
? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
? ? ? ? ? ? ?
? ? ? ? ?

Disorder confidence

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480

Sequence G D L N Q G V L I D A P A G E L V F G P N P L P A P N V E V V G S P I T T L Y V K I D G G T P I P V P S I I D S G G V T

Secondary structure

SS confidence

Disorder ?
?
? ? ? ? ?
? ? ?
?
?
? ? ?

Disorder confidence

. . . . . . . . . 490 . . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540

Sequence G T I P S Y V I G S G T L P A N T N I E V Y T S P G G D R L Y A F N T N D Y R P T V I S S G L M N T G F L P F R F Q P V

Secondary structure

SS confidence

Disorder
? ? ? ?
? ? ?
? ?

Disorder confidence

. . . . . . . . . 550 . . . . . . . .

Sequence Y I D Y S P S G I G T T V F D H P A

Secondary structure

SS confidence

Disorder
? ? ? ? ? ?

Disorder confidence

Confidence Key
High(9) Low (0)

? Disordered ( 46%)

Alpha helix ( 16%)

Beta strand ( 23%)

Domain analysis [Show]

PDB 5xfs chain A

PDB 2g38 chain A domain 1