Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2102_(-)_2363399_2364115
DateMon Aug 5 13:25:22 BST 2019
Unique Job ID3182d48f40c1016a
SequenceVLEDIGLGNR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:31.427 Y:47.319 Z:39.035
Model (left) based on template c1vzyA_
Top template information
PDB header:chaperone
Chain: A: PDB Molecule:33 kda chaperonin;
PDBTitle: crystal structure of the bacillus subtilis hsp33
Confidence and coverage
Confidence: 82.2% Coverage: 25%
60 residues ( 25% of your sequence) have been modelled with 82.2% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1vzyA_
82.2 17
PDB header:chaperone
Chain: A: PDB Molecule:33 kda chaperonin;
PDBTitle: crystal structure of the bacillus subtilis hsp33
2c1vq0A_
67.8 13
PDB header:chaperone
Chain: A: PDB Molecule:33 kda chaperonin;
PDBTitle: crystal structure of 33 kda chaperonin (heat shock protein 33 homolog)2 (hsp33) (tm1394) from thermotoga maritima at 2.20 a resolution
3c3h7hA_
60.4 15
PDB header:transcription
Chain: A: PDB Molecule:transcription elongation factor spt4;
PDBTitle: crystal structure of the human transcription elongation factor dsif,2 hspt4/hspt5 (176-273)
4c5xonV_
59.6 24
PDB header:transcription/rna
Chain: V: PDB Molecule:transcription elongation factor spt4;
PDBTitle: rna polymerase ii elongation complex bound with spt4/5 and tfiis
5d1hw7a_
57.1 9
Fold:Hsp33 domain
Superfamily:Hsp33 domain
Family:Hsp33 domain
6c1hw7A_
57.1 9
PDB header:chaperone
Chain: A: PDB Molecule:heat shock protein hsp33;
PDBTitle: hsp33, heat shock protein with redox-regulated chaperone activity
7d3c7bb2
26.2 18
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:DsrA/DsrB N-terminal-domain-like
8d1wfra_
24.7 18
Fold:SCP-like
Superfamily:SCP-like
Family:Sterol carrier protein, SCP
9c5e37A_
24.0 26
PDB header:oxidoreductase
Chain: A: PDB Molecule:ef-hand domain-containing thioredoxin;
PDBTitle: redox protein from chlamydomonas reinhardtii
10c5nymA_
19.9 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin-like protein 2.1;
PDBTitle: crystal structure of the atypical poplar thioredoxin-like2.1 in2 reduced state
11d1yvwa1
19.0 20
Fold:all-alpha NTP pyrophosphatases
Superfamily:all-alpha NTP pyrophosphatases
Family:HisE-like (PRA-PH)
12c1yvwD_
19.0 20
PDB header:hydrolase
Chain: D: PDB Molecule:phosphoribosyl-atp pyrophosphatase;
PDBTitle: crystal structure of phosphoribosyl-atp2 pyrophosphohydrolase from bacillus cereus. nesgc target3 bcr13.
13d1qgva_
17.4 22
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:spliceosomal protein U5-15Kd
14c2muyA_
14.7 15
PDB header:nucleotide binding protein
Chain: A: PDB Molecule:atp-dependent zinc metalloprotease ftsh;
PDBTitle: the solution structure of the ftsh periplasmic n-domain
15c2ashB_
14.3 12
PDB header:transferase
Chain: B: PDB Molecule:queuine trna-ribosyltransferase;
PDBTitle: crystal structure of queuine trna-ribosyltransferase (ec 2.4.2.29)2 (trna-guanine (tm1561) from thermotoga maritima at 1.90 a resolution
16c2yukA_
14.2 36
PDB header:transferase
Chain: A: PDB Molecule:myeloid/lymphoid or mixed-lineage leukemia
PDBTitle: solution structure of the hmg box of human myeloid/lymphoid2 or mixed-lineage leukemia protein 3 homolog
17c5ganD_
14.1 13
PDB header:transcription
Chain: D: PDB Molecule:spliceosomal protein dib1;
PDBTitle: the overall structure of the yeast spliceosomal u4/u6.u5 tri-snrnp at2 3.7 angstrom
18c5bniA_
13.9 33
PDB header:hydrolase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: porcine cd38 complexed with complexed with a covalent intermediate,2 ribo-f-ribose-5'-phosphate
19c6iedA_
13.3 25
PDB header:membrane protein
Chain: A: PDB Molecule:heme a synthase;
PDBTitle: crystal structure of heme a synthase from bacillus subtilis
20c2xzmS_
12.3 38
PDB header:ribosome
Chain: S: PDB Molecule:rps15e;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1
21c1k48A_
not modelled 11.9 38
PDB header:plant protein
Chain: A: PDB Molecule:kalata b1;
PDBTitle: refined structure and disulfide pairing of the kalata b12 peptide
22c1jjzA_
not modelled 11.9 38
PDB header:plant protein
Chain: A: PDB Molecule:kalata b1;
PDBTitle: refined structure and disulfide pairing of the kalata b12 peptide
23d1vaza_
not modelled 11.9 24
Fold:NSFL1 (p97 ATPase) cofactor p47, SEP domain
Superfamily:NSFL1 (p97 ATPase) cofactor p47, SEP domain
Family:NSFL1 (p97 ATPase) cofactor p47, SEP domain
24c1xbsA_
not modelled 11.2 15
PDB header:transcription, cell cycle
Chain: A: PDB Molecule:dim1-like protein;
PDBTitle: crystal structure of human dim2: a dim1-like protein
25c5xyiP_
not modelled 11.1 38
PDB header:ribosome
Chain: P: PDB Molecule:ribosomal protein s19, putative;
PDBTitle: small subunit of trichomonas vaginalis ribosome
26c6dy3G_
not modelled 10.9 15
PDB header:hydrolase
Chain: G: PDB Molecule:n-acylethanolamine-hydrolyzing acid amidase alpha-subunit;
PDBTitle: caenorhabditis elegans n-acylethanolamine-hydrolyzing acid amidase2 (naaa) ortholog
27c3k1tA_
not modelled 10.8 24
PDB header:ligase
Chain: A: PDB Molecule:glutamate--cysteine ligase gsha;
PDBTitle: crystal structure of putative gamma-glutamylcysteine synthetase2 (yp_546622.1) from methylobacillus flagellatus kt at 1.90 a3 resolution
28d2ifqa1
not modelled 10.7 27
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
29c3j20T_
not modelled 10.7 31
PDB header:ribosome
Chain: T: PDB Molecule:30s ribosomal protein s19p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (30s3 ribosomal subunit)
30d1ss6a_
not modelled 10.1 24
Fold:NSFL1 (p97 ATPase) cofactor p47, SEP domain
Superfamily:NSFL1 (p97 ATPase) cofactor p47, SEP domain
Family:NSFL1 (p97 ATPase) cofactor p47, SEP domain
31c5fa0B_
not modelled 9.8 13
PDB header:transferase
Chain: B: PDB Molecule:putative n-acetyl glucosaminyl transferase;
PDBTitle: the structure of the beta-3-deoxy-d-manno-oct-2-ulosonic acid2 transferase domain from wbbb
32c4u4cB_
not modelled 9.7 33
PDB header:hydrolase
Chain: B: PDB Molecule:protein air2,poly(a) rna polymerase protein 2;
PDBTitle: the molecular architecture of the tramp complex reveals the2 organization and interplay of its two catalytic activities
33c4v0bA_
not modelled 9.5 15
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent zinc metalloprotease ftsh;
PDBTitle: escherichia coli ftsh hexameric n-domain
34c1vyuB_
not modelled 9.3 15
PDB header:ion transport
Chain: B: PDB Molecule:calcium channel beta-3 subunit;
PDBTitle: beta3 subunit of voltage-gated ca2+-channel
35c2exuA_
not modelled 9.2 18
PDB header:transcription
Chain: A: PDB Molecule:transcription initiation protein spt4/spt5;
PDBTitle: crystal structure of saccharomyces cerevisiae transcription elongation2 factors spt4-spt5ngn domain
36c4kmhB_
not modelled 9.0 20
PDB header:protein binding
Chain: B: PDB Molecule:suppressor of fused homolog;
PDBTitle: crystal structure of suppressor of fused d20
37d2hfda1
not modelled 8.7 13
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:HyaE-like
38c5td6A_
not modelled 8.6 17
PDB header:rna binding protein
Chain: A: PDB Molecule:fog-3 protein;
PDBTitle: c. elegans fog-3 btg/tob domain - h47n, c117a
39c5yixB_
not modelled 8.6 22
PDB header:dna binding protein
Chain: B: PDB Molecule:cell cycle regulatory protein gcra;
PDBTitle: caulobacter crescentus gcra sigma-interacting domain (sid) in complex2 with domain 2 of sigma 70
40c2a7wF_
not modelled 8.3 17
PDB header:hydrolase
Chain: F: PDB Molecule:phosphoribosyl-atp pyrophosphatase;
PDBTitle: crystal structure of phosphoribosyl-atp pyrophosphatase2 from chromobacterium violaceum (atcc 12472). nesg target3 cvr7
41d2a7wa1
not modelled 8.3 17
Fold:all-alpha NTP pyrophosphatases
Superfamily:all-alpha NTP pyrophosphatases
Family:HisE-like (PRA-PH)
42c3ghhA_
not modelled 8.1 27
PDB header:hydrolase
Chain: A: PDB Molecule:ecto-nad+ glycohydrolase (cd38 molecule);
PDBTitle: structural insights into the catalytic mechanism of cd38: evidence for2 a conformationally flexible covalent enzyme-substrate complex.
43c3j38P_
not modelled 8.1 31
PDB header:ribosome
Chain: P: PDB Molecule:40s ribosomal protein s15, isoform a;
PDBTitle: structure of the d. melanogaster 40s ribosomal proteins
44c1rjuV_
not modelled 7.9 80
PDB header:metal binding protein
Chain: V: PDB Molecule:metallothionein;
PDBTitle: crystal structure of a truncated form of yeast copper2 thionein
45c1aqsA_
not modelled 7.9 80
PDB header:metallothionein
Chain: A: PDB Molecule:cu-metallothionein;
PDBTitle: cu-metallothionein from saccharomyces cerevisiae, nmr, 102 structures
46c4cvuA_
not modelled 7.9 12
PDB header:hydrolase
Chain: A: PDB Molecule:beta-mannosidase;
PDBTitle: structure of fungal beta-mannosidase from glycoside hydrolase family 22 of trichoderma harzianum
47c4lhdB_
not modelled 7.7 18
PDB header:oxidoreductase
Chain: B: PDB Molecule:glycine dehydrogenase [decarboxylating];
PDBTitle: crystal structure of synechocystis sp. pcc 6803 glycine decarboxylase2 (p-protein), holo form with pyridoxal-5'-phosphate and glycine,3 closed flexible loop
48c6fv5B_
not modelled 7.7 24
PDB header:transferase
Chain: B: PDB Molecule:queuine trna-ribosyltransferase accessory subunit 2;
PDBTitle: qtrt2, the non-catalytic subunit of murine trna-guanine2 transglycosylase
49c4d18G_
not modelled 7.4 19
PDB header:signaling protein
Chain: G: PDB Molecule:cop9 signalosome complex subunit 7a;
PDBTitle: crystal structure of the cop9 signalosome
50d1xjha_
not modelled 7.4 25
Fold:HSP33 redox switch-like
Superfamily:HSP33 redox switch-like
Family:HSP33 redox switch-like
51d1bwva2
not modelled 7.4 15
Fold:Ferredoxin-like
Superfamily:RuBisCO, large subunit, small (N-terminal) domain
Family:Ribulose 1,5-bisphosphate carboxylase-oxygenase
52c4ttnA_
not modelled 7.2 38
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: quasi-racemic structure of [g6a]kalata b1
53c3zeyI_
not modelled 7.2 46
PDB header:ribosome
Chain: I: PDB Molecule:40s ribosomal protein s15, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
54c4ttmA_
not modelled 7.1 38
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: racemic structure of kalata b1 (kb1)
55c2khbA_
not modelled 7.1 38
PDB header:antimicrobial protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: solution structure of linear kalata b1 (loop 6)
56d1gyxa_
not modelled 7.1 17
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:4-oxalocrotonate tautomerase-like
57d1b5ta_
not modelled 7.0 6
Fold:TIM beta/alpha-barrel
Superfamily:FAD-linked oxidoreductase
Family:Methylenetetrahydrofolate reductase
58c5xxuP_
not modelled 6.9 38
PDB header:ribosome
Chain: P: PDB Molecule:ribosomal protein us19;
PDBTitle: small subunit of toxoplasma gondii ribosome
59c2k2wA_
not modelled 6.8 29
PDB header:cell cycle
Chain: A: PDB Molecule:recombination and dna repair protein;
PDBTitle: second brct domain of nbs1
60d1ijwc_
not modelled 6.8 24
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Recombinase DNA-binding domain
61c2dj0A_
not modelled 6.7 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:thioredoxin-related transmembrane protein 2;
PDBTitle: the solution structure of the thioredoxin domain of human2 thioredoxin-related transmembrane protein 2
62c4ttoA_
not modelled 6.6 38
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: quasi-racemic structure of [v25a] kalata b1
63d2z15a1
not modelled 6.6 10
Fold:BTG domain-like
Superfamily:BTG domain-like
Family:BTG domain-like
64c2vlwA_
not modelled 6.5 44
PDB header:toxin
Chain: A: PDB Molecule:muscarinic m1-toxin1;
PDBTitle: crystal structure of the muscarinic toxin mt7 diiodotyr512 derivative.
65c5husA_
not modelled 6.3 16
PDB header:transferase
Chain: A: PDB Molecule:trehalose synthase regulatory protein;
PDBTitle: structure of candida albicans trehalose synthase regulatory protein c-2 terminal domain
66c6mwcN_
not modelled 6.3 16
PDB header:virus/immune system
Chain: N: PDB Molecule:e2;
PDBTitle: cryoem structure of chimeric eastern equine encephalitis virus with2 fab of eeev-5 antibody
67c2kukA_
not modelled 6.2 33
PDB header:antiviral protein
Chain: A: PDB Molecule:leaf cyclotide 2;
PDBTitle: solution structure of vhl-2
68c3phfX_
not modelled 5.9 50
PDB header:viral protein
Chain: X: PDB Molecule:envelope glycoprotein l;
PDBTitle: crystal structure of the epstein-barr virus gh and gl complex
69d1hcra_
not modelled 5.8 24
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Recombinase DNA-binding domain
70c3hypB_
not modelled 5.8 26
PDB header:electron transport
Chain: B: PDB Molecule:thioredoxin;
PDBTitle: crystal structure of bacteroides fragilis trxp_s105g mutant
71d1nt0a3
not modelled 5.7 38
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:EGF/Laminin
Family:EGF-type module
72d1yh5a1
not modelled 5.6 16
Fold:YggU-like
Superfamily:YggU-like
Family:YggU-like
73c6ckdA_
not modelled 5.6 27
PDB header:toxin
Chain: A: PDB Molecule:osptx2a-p1;
PDBTitle: structure of a new shkt peptide from the sea anemone oulactis sp:2 osptx2a-p1
74d1j08a1
not modelled 5.5 17
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:PDI-like
75c2pptA_
not modelled 5.3 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin-2;
PDBTitle: crystal structure of thioredoxin-2
76d1w2za3
not modelled 5.2 3
Fold:Cystatin-like
Superfamily:Amine oxidase N-terminal region
Family:Amine oxidase N-terminal region
77d1w6ga3
not modelled 5.2 15
Fold:Cystatin-like
Superfamily:Amine oxidase N-terminal region
Family:Amine oxidase N-terminal region
78c4z45A_
not modelled 5.2 13
PDB header:odorant binding protein
Chain: A: PDB Molecule:odorant-binding protein nribobp3;
PDBTitle: structure of obp3 from the currant-lettuce aphid nasonovia ribisnigri
79c1i7fA_
not modelled 5.1 8
PDB header:chaperone
Chain: A: PDB Molecule:heat shock protein 33;
PDBTitle: crystal structure of the hsp33 domain with constitutive chaperone2 activity
80d1m7xa2
not modelled 5.1 19
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
81d1fcdc1
not modelled 5.1 0
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Two-domain cytochrome c
82d1vqqa2
not modelled 5.1 20
Fold:Penicillin binding protein dimerisation domain
Superfamily:Penicillin binding protein dimerisation domain
Family:Penicillin binding protein dimerisation domain
83d2i9aa1
not modelled 5.1 60
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:EGF/Laminin
Family:EGF-type module

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