Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2655c_(-)_2977241_2978668
DateWed Aug 7 12:50:30 BST 2019
Unique Job ID9143870c382e6c9f
SequenceMADIPYGRDY ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:55.123 Y:43.023 Z:37.237
Model (left) based on template c3b9pA_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:cg5977-pa, isoform a;
PDBTitle: spastin
Confidence and coverage
Confidence: 97.4% Coverage: 25%
120 residues ( 25% of your sequence) have been modelled with 97.4% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
339 residues ( 71%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3b9pA_
97.4 18
PDB header:hydrolase
Chain: A: PDB Molecule:cg5977-pa, isoform a;
PDBTitle: spastin
2c3hu2C_
97.1 19
PDB header:transport protein
Chain: C: PDB Molecule:transitional endoplasmic reticulum atpase;
PDBTitle: structure of p97 n-d1 r86a mutant in complex with atpgs
3c3hteC_
97.0 14
PDB header:motor protein
Chain: C: PDB Molecule:atp-dependent clp protease atp-binding subunit clpx;
PDBTitle: crystal structure of nucleotide-free hexameric clpx
4c4b4tI_
96.9 20
PDB header:hydrolase
Chain: I: PDB Molecule:26s protease regulatory subunit 4 homolog;
PDBTitle: near-atomic resolution structural model of the yeast 26s proteasome
5c6nyyC_
96.9 21
PDB header:translocase
Chain: C: PDB Molecule:afg3-like protein 2;
PDBTitle: human m-aaa protease afg3l2, substrate-bound
6d1r6bx3
96.9 17
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
7c4b4tH_
96.8 17
PDB header:hydrolase
Chain: H: PDB Molecule:26s protease regulatory subunit 7 homolog;
PDBTitle: near-atomic resolution structural model of the yeast 26s proteasome
8c5u8s4_
96.8 16
PDB header:replication
Chain: 4: PDB Molecule:dna replication licensing factor mcm4;
PDBTitle: structure of eukaryotic cmg helicase at a replication fork
9c3cf1C_
96.8 21
PDB header:transport protein
Chain: C: PDB Molecule:transitional endoplasmic reticulum atpase;
PDBTitle: structure of p97/vcp in complex with adp/adp.alfx
10c6matE_
96.8 14
PDB header:ribosomal protein
Chain: E: PDB Molecule:rix7 mutant;
PDBTitle: cryo-em structure of the essential ribosome assembly aaa-atpase rix7
11c1s3sA_
96.7 21
PDB header:protein binding
Chain: A: PDB Molecule:transitional endoplasmic reticulum atpase (ter
PDBTitle: crystal structure of aaa atpase p97/vcp nd1 in complex with2 p47 c
12c5m7nA_
96.7 17
PDB header:signaling protein
Chain: A: PDB Molecule:nitrogen assimilation regulatory protein;
PDBTitle: crystal structure of ntrx from brucella abortus in complex with atp2 processed with the crystaldirect automated mounting and cryo-cooling3 technology
13c5wc0D_
96.7 17
PDB header:motor protein
Chain: D: PDB Molecule:meiotic spindle formation protein mei-1;
PDBTitle: katanin hexamer in spiral conformation
14c4ypnA_
96.6 24
PDB header:hydrolase
Chain: A: PDB Molecule:lon protease;
PDBTitle: crystal structure of a lona fragment containing the 3-helix bundle and2 the aaa-alpha/beta domain
15c6opcF_
96.6 21
PDB header:motor protein
Chain: F: PDB Molecule:cell division control protein 48;
PDBTitle: cdc48 hexamer in a complex with substrate and shp1(ubx domain)
16d1d2na_
96.6 14
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
17d1um8a_
96.5 18
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
18c3f8tA_
96.5 14
PDB header:hydrolase
Chain: A: PDB Molecule:predicted atpase involved in replication control, cdc46/mcm
PDBTitle: crystal structure analysis of a full-length mcm homolog from2 methanopyrus kandleri
19c2hcbC_
96.5 13
PDB header:replication
Chain: C: PDB Molecule:chromosomal replication initiator protein dnaa;
PDBTitle: structure of amppcp-bound dnaa from aquifex aeolicus
20c1nsfA_
96.5 16
PDB header:protein transport
Chain: A: PDB Molecule:n-ethylmaleimide sensitive factor;
PDBTitle: d2 hexamerization domain of n-ethylmaleimide sensitive factor (nsf)
21c4b4tL_
not modelled 96.5 15
PDB header:hydrolase
Chain: L: PDB Molecule:26s protease subunit rpt4;
PDBTitle: near-atomic resolution structural model of the yeast 26s proteasome
22c5g4gF_
not modelled 96.4 16
PDB header:hydrolase
Chain: F: PDB Molecule:vcp-like atpase;
PDBTitle: structure of the atpgs-bound vat complex
23c4b4tJ_
not modelled 96.4 15
PDB header:hydrolase
Chain: J: PDB Molecule:26s protease regulatory subunit 8 homolog;
PDBTitle: near-atomic resolution structural model of the yeast 26s proteasome
24c6epdM_
not modelled 96.4 13
PDB header:hydrolase
Chain: M: PDB Molecule:26s proteasome regulatory subunit 6a;
PDBTitle: substrate processing state 26s proteasome (sps1)
25c4z8xC_
not modelled 96.4 22
PDB header:hydrolase
Chain: C: PDB Molecule:atp-dependent zinc metalloprotease ftsh;
PDBTitle: truncated ftsh from a. aeolicus
26c3pvsA_
not modelled 96.4 22
PDB header:recombination
Chain: A: PDB Molecule:replication-associated recombination protein a;
PDBTitle: structure and biochemical activities of escherichia coli mgsa
27c3d8bB_
not modelled 96.3 20
PDB header:hydrolase
Chain: B: PDB Molecule:fidgetin-like protein 1;
PDBTitle: crystal structure of human fidgetin-like protein 1 in complex with adp
28c3pfiB_
not modelled 96.3 13
PDB header:hydrolase
Chain: B: PDB Molecule:holliday junction atp-dependent dna helicase ruvb;
PDBTitle: 2.7 angstrom resolution crystal structure of a probable holliday2 junction dna helicase (ruvb) from campylobacter jejuni subsp. jejuni3 nctc 11168 in complex with adenosine-5'-diphosphate
29c6hv92_
not modelled 96.3 23
PDB header:dna binding protein
Chain: 2: PDB Molecule:dna replication licensing factor mcm2;
PDBTitle: s. cerevisiae cmg-pol epsilon-dna
30c4l16A_
not modelled 96.3 18
PDB header:hydrolase
Chain: A: PDB Molecule:fidgetin-like protein 1;
PDBTitle: crystal structure of figl-1 aaa domain in complex with adp
31c4b4tK_
not modelled 96.3 23
PDB header:hydrolase
Chain: K: PDB Molecule:26s protease regulatory subunit 6b homolog;
PDBTitle: near-atomic resolution structural model of the yeast 26s proteasome
32c6mdnF_
not modelled 96.3 19
PDB header:hydrolase
Chain: F: PDB Molecule:vesicle-fusing atpase;
PDBTitle: the 20s supercomplex engaging the snap-25 n-terminus (class 2)
33c6b5cA_
not modelled 96.3 20
PDB header:cell cycle
Chain: A: PDB Molecule:katanin p60 atpase-containing subunit a-like 1;
PDBTitle: structural basis for katanin self-assembly
34d1qvra3
not modelled 96.3 18
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
35c3dzdA_
not modelled 96.3 14
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of sigma54 activator ntrc4 in the inactive2 state
36c3jc76_
not modelled 96.2 16
PDB header:hydrolase
Chain: 6: PDB Molecule:dna replication licensing factor mcm6;
PDBTitle: structure of the eukaryotic replicative cmg helicase and pumpjack2 motion
37c5udb7_
not modelled 96.2 19
PDB header:replication
Chain: 7: PDB Molecule:dna replication licensing factor mcm7;
PDBTitle: structural basis of mcm2-7 replicative helicase loading by orc-cdc62 and cdt1
38c5z3qD_
not modelled 96.2 14
PDB header:viral protein
Chain: D: PDB Molecule:pv-2c;
PDBTitle: crystal structure of a soluble fragment of poliovirus 2c atpase (2.552 angstrom)
39c5ep0A_
not modelled 96.2 22
PDB header:transcription
Chain: A: PDB Molecule:putative repressor protein luxo;
PDBTitle: quorum-sensing signal integrator luxo - receiver+catalytic domains
40c3cf2B_
not modelled 96.2 21
PDB header:transport protein
Chain: B: PDB Molecule:transitional endoplasmic reticulum atpase;
PDBTitle: structure of p97/vcp in complex with adp/amp-pnp
41c3jc57_
not modelled 96.2 17
PDB header:hydrolase
Chain: 7: PDB Molecule:dna replication licensing factor mcm7;
PDBTitle: structure of the eukaryotic replicative cmg helicase and pumpjack2 motion
42c1sxjA_
not modelled 96.2 18
PDB header:replication
Chain: A: PDB Molecule:activator 1 95 kda subunit;
PDBTitle: crystal structure of the eukaryotic clamp loader (replication factor2 c, rfc) bound to the dna sliding clamp (proliferating cell nuclear3 antigen, pcna)
43d1g41a_
not modelled 96.2 16
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
44c5t0gA_
not modelled 96.1 16
PDB header:hydrolase
Chain: A: PDB Molecule:26s protease regulatory subunit 7;
PDBTitle: structural basis for dynamic regulation of the human 26s proteasome
45c1ny5A_
not modelled 96.1 21
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state
46c5udb3_
not modelled 96.1 16
PDB header:replication
Chain: 3: PDB Molecule:dna replication licensing factor mcm3;
PDBTitle: structural basis of mcm2-7 replicative helicase loading by orc-cdc62 and cdt1
47c5x06G_
not modelled 96.1 11
PDB header:replication
Chain: G: PDB Molecule:dnaa regulatory inactivator hda;
PDBTitle: dna replication regulation protein
48c1ojlD_
not modelled 96.1 15
PDB header:response regulator
Chain: D: PDB Molecule:transcriptional regulatory protein zrar;
PDBTitle: crystal structure of a sigma54-activator suggests the mechanism for2 the conformational switch necessary for sigma54 binding
49d2ce7a2
not modelled 96.0 23
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
50c5ep4A_
not modelled 96.0 16
PDB header:transcription
Chain: A: PDB Molecule:putative repressor protein luxo;
PDBTitle: structure, regulation, and inhibition of the quorum-sensing signal2 integrator luxo
51c1in8A_
not modelled 96.0 13
PDB header:dna binding protein
Chain: A: PDB Molecule:holliday junction dna helicase ruvb;
PDBTitle: thermotoga maritima ruvb t158v
52c3vfdA_
not modelled 96.0 14
PDB header:hydrolase
Chain: A: PDB Molecule:spastin;
PDBTitle: human spastin aaa domain
53d1in4a2
not modelled 96.0 14
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
54c2kjqA_
not modelled 96.0 15
PDB header:replication
Chain: A: PDB Molecule:dnaa-related protein;
PDBTitle: solution structure of protein nmb1076 from neisseria meningitidis.2 northeast structural genomics consortium target mr101b.
55c2r65A_
not modelled 96.0 21
PDB header:hydrolase
Chain: A: PDB Molecule:cell division protease ftsh homolog;
PDBTitle: crystal structure of helicobacter pylori atp dependent protease, ftsh2 adp complex
56d1l8qa2
not modelled 96.0 11
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
57c5h7i7_
not modelled 95.9 17
PDB header:hydrolase
Chain: 7: PDB Molecule:dna replication licensing factor mcm7;
PDBTitle: cryo-em structure of the cdt1-mcm2-7 complex in amppnp state
58c3eihB_
not modelled 95.9 18
PDB header:protein transport
Chain: B: PDB Molecule:vacuolar protein sorting-associated protein 4;
PDBTitle: crystal structure of s.cerevisiae vps4 in the presence of atpgammas
59c5j1sA_
not modelled 95.9 14
PDB header:hydrolase
Chain: A: PDB Molecule:torsin-1a;
PDBTitle: torsina-lull1 complex, h. sapiens, bound to vhh-bs2
60c3j96F_
not modelled 95.9 19
PDB header:hydrolase
Chain: F: PDB Molecule:vesicle-fusing atpase;
PDBTitle: structure of 20s supercomplex determined by single particle2 cryoelectron microscopy (state i)
61c3zw6B_
not modelled 95.9 16
PDB header:photosynthesis
Chain: B: PDB Molecule:ribulose bisphosphate carboxylase/oxygenase activase 1,
PDBTitle: model of hexameric aaa domain arrangement of green-type rubisco2 activase from tobacco.
62c1r6bX_
not modelled 95.9 15
PDB header:hydrolase
Chain: X: PDB Molecule:clpa protein;
PDBTitle: high resolution crystal structure of clpa
63c5kneF_
not modelled 95.9 18
PDB header:chaperone
Chain: F: PDB Molecule:heat shock protein 104;
PDBTitle: cryoem reconstruction of hsp104 hexamer
64c1ojlF_
not modelled 95.9 14
PDB header:response regulator
Chain: F: PDB Molecule:transcriptional regulatory protein zrar;
PDBTitle: crystal structure of a sigma54-activator suggests the mechanism for2 the conformational switch necessary for sigma54 binding
65c4b4tM_
not modelled 95.8 13
PDB header:hydrolase
Chain: M: PDB Molecule:26s protease regulatory subunit 6a;
PDBTitle: near-atomic resolution structural model of the yeast 26s proteasome
66c6hecH_
not modelled 95.8 17
PDB header:hydrolase
Chain: H: PDB Molecule:proteasome-activating nucleotidase;
PDBTitle: pan-proteasome in state 4
67c3jc55_
not modelled 95.8 21
PDB header:hydrolase
Chain: 5: PDB Molecule:minichromosome maintenance protein 5;
PDBTitle: structure of the eukaryotic replicative cmg helicase and pumpjack2 motion
68c1iy2A_
not modelled 95.8 18
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent metalloprotease ftsh;
PDBTitle: crystal structure of the ftsh atpase domain from thermus2 thermophilus
69c6nyyA_
not modelled 95.7 22
PDB header:translocase
Chain: A: PDB Molecule:afg3-like protein 2;
PDBTitle: human m-aaa protease afg3l2, substrate-bound
70c5mpaL_
not modelled 95.7 17
PDB header:hydrolase
Chain: L: PDB Molecule:26s protease subunit rpt4;
PDBTitle: 26s proteasome in presence of atp (s2)
71c2zamA_
not modelled 95.7 17
PDB header:protein transport
Chain: A: PDB Molecule:vacuolar protein sorting-associating protein 4b;
PDBTitle: crystal structure of mouse skd1/vps4b apo-form
72c2x8aA_
not modelled 95.7 16
PDB header:nuclear protein
Chain: A: PDB Molecule:nuclear valosin-containing protein-like;
PDBTitle: human nuclear valosin containing protein like (nvl), c-2 terminal aaa-atpase domain
73c3ja87_
not modelled 95.7 20
PDB header:hydrolase
Chain: 7: PDB Molecule:minichromosome maintenance 7;
PDBTitle: cryo-em structure of the mcm2-7 double hexamer
74c3jc72_
not modelled 95.6 22
PDB header:hydrolase
Chain: 2: PDB Molecule:dna replication licensing factor mcm2;
PDBTitle: structure of the eukaryotic replicative cmg helicase and pumpjack2 motion
75d1ixza_
not modelled 95.5 20
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
76c5ifwB_
not modelled 95.5 16
PDB header:signaling protein
Chain: B: PDB Molecule:transitional endoplasmic reticulum atpase;
PDBTitle: quantitative interaction mapping reveals an extended ubiquitin2 regulatory domain in aspl that disrupts functional p97 hexamers and3 induces cell death
77c6az0A_
not modelled 95.5 18
PDB header:hydrolase
Chain: A: PDB Molecule:mitochondrial inner membrane i-aaa protease supercomplex
PDBTitle: mitochondrial atpase protease yme1
78c5w0tA_
not modelled 95.5 16
PDB header:hydrolase
Chain: A: PDB Molecule:protein msp1;
PDBTitle: crystal structure of monomeric msp1 from s. cerevisiae
79c3ja84_
not modelled 95.5 15
PDB header:hydrolase
Chain: 4: PDB Molecule:minichromosome maintenance 4;
PDBTitle: cryo-em structure of the mcm2-7 double hexamer
80c5ujmE_
not modelled 95.5 16
PDB header:replication
Chain: E: PDB Molecule:origin recognition complex subunit 5;
PDBTitle: structure of the active form of human origin recognition complex and2 its atpase motor module
81c2dhrC_
not modelled 95.5 20
PDB header:hydrolase
Chain: C: PDB Molecule:ftsh;
PDBTitle: whole cytosolic region of atp-dependent metalloprotease2 ftsh (g399l)
82c5e7pA_
not modelled 95.5 27
PDB header:hydrolase
Chain: A: PDB Molecule:cell division control protein cdc48;
PDBTitle: crystal structure of msmeg_0858 (uniprot a0qqs4), a aaa atpase.
83c2ce7B_
not modelled 95.5 16
PDB header:cell division protein
Chain: B: PDB Molecule:cell division protein ftsh;
PDBTitle: edta treated
84c2z4rB_
not modelled 95.4 16
PDB header:dna binding protein
Chain: B: PDB Molecule:chromosomal replication initiator protein dnaa;
PDBTitle: crystal structure of domain iii from the thermotoga2 maritima replication initiation protein dnaa
85c6epcJ_
not modelled 95.3 18
PDB header:hydrolase
Chain: J: PDB Molecule:26s proteasome regulatory subunit 8;
PDBTitle: ground state 26s proteasome (gs2)
86d1ny5a2
not modelled 95.3 15
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
87c6djuA_
not modelled 95.3 20
PDB header:chaperone
Chain: A: PDB Molecule:chaperone protein clpb;
PDBTitle: mtb clpb in complex with atpgammas and casein, conformer 1
88c6hv96_
not modelled 95.2 20
PDB header:dna binding protein
Chain: 6: PDB Molecule:dna replication licensing factor mcm6;
PDBTitle: s. cerevisiae cmg-pol epsilon-dna
89c3jc73_
not modelled 95.2 16
PDB header:hydrolase
Chain: 3: PDB Molecule:dna replication licensing factor mcm3;
PDBTitle: structure of the eukaryotic replicative cmg helicase and pumpjack2 motion
90c5vq9D_
not modelled 95.1 16
PDB header:protein binding
Chain: D: PDB Molecule:pachytene checkpoint protein 2 homolog;
PDBTitle: structure of human trip13, apo form
91c3ja83_
not modelled 95.1 16
PDB header:hydrolase
Chain: 3: PDB Molecule:minichromosome maintenance 3;
PDBTitle: cryo-em structure of the mcm2-7 double hexamer
92c6hv93_
not modelled 95.1 16
PDB header:dna binding protein
Chain: 3: PDB Molecule:dna replication licensing factor mcm3;
PDBTitle: s. cerevisiae cmg-pol epsilon-dna
93c5d4wB_
not modelled 95.1 16
PDB header:chaperone
Chain: B: PDB Molecule:putative heat shock protein;
PDBTitle: crystal structure of hsp104
94c6blbA_
not modelled 95.1 14
PDB header:hydrolase
Chain: A: PDB Molecule:holliday junction atp-dependent dna helicase ruvb;
PDBTitle: 1.88 angstrom resolution crystal structure holliday junction atp-2 dependent dna helicase (ruvb) from pseudomonas aeruginosa in complex3 with adp
95c4r7zB_
not modelled 95.0 17
PDB header:hydrolase
Chain: B: PDB Molecule:cell division control protein 21;
PDBTitle: pfmcm-aaa double-octamer
96c3ja82_
not modelled 94.9 24
PDB header:hydrolase
Chain: 2: PDB Molecule:minichromosome maintenance 2;
PDBTitle: cryo-em structure of the mcm2-7 double hexamer
97c3sylB_
not modelled 94.9 16
PDB header:chaperone
Chain: B: PDB Molecule:protein cbbx;
PDBTitle: crystal structure of the aaa+ protein cbbx, native structure
98c5gjqL_
not modelled 94.9 19
PDB header:hydrolase
Chain: L: PDB Molecule:26s protease regulatory subunit 10b;
PDBTitle: structure of the human 26s proteasome bound to usp14-ubal
99c5v8f3_
not modelled 94.8 16
PDB header:replication
Chain: 3: PDB Molecule:dna replication licensing factor mcm3;
PDBTitle: structural basis of mcm2-7 replicative helicase loading by orc-cdc62 and cdt1
100d1r7ra3
not modelled 94.7 15
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
101c6azyA_
not modelled 94.7 21
PDB header:chaperone
Chain: A: PDB Molecule:heat shock protein hsp104;
PDBTitle: crystal structure of hsp104 r328m/r757m mutant from calcarisporiella2 thermophila
102c3u5zM_
not modelled 94.6 18
PDB header:dna binding protein/dna
Chain: M: PDB Molecule:dna polymerase accessory protein 44;
PDBTitle: structure of t4 bacteriophage clamp loader bound to the t4 clamp,2 primer-template dna, and atp analog
103d1ofha_
not modelled 94.5 19
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
104c1sxjE_
not modelled 94.5 13
PDB header:replication
Chain: E: PDB Molecule:activator 1 40 kda subunit;
PDBTitle: crystal structure of the eukaryotic clamp loader (replication factor2 c, rfc) bound to the dna sliding clamp (proliferating cell nuclear3 antigen, pcna)
105c5exsA_
not modelled 94.4 20
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator fleq;
PDBTitle: aaa+ atpase fleq from pseudomonas aeruginosa bound to atp-gamma-s
106c5he8J_
not modelled 94.4 15
PDB header:protein binding
Chain: J: PDB Molecule:helicase loader;
PDBTitle: bacterial initiation protein
107c4lcbA_
not modelled 94.3 21
PDB header:protein transport
Chain: A: PDB Molecule:cell division protein cdvc, vps4;
PDBTitle: structure of vps4 homolog from acidianus hospitalis
108c5ubvB_
not modelled 94.3 20
PDB header:hydrolase
Chain: B: PDB Molecule:atpase domain of i-aaa protease;
PDBTitle: atpase domain of i-aaa protease from myceliophthora thermophila
109c5c3cB_
not modelled 94.3 27
PDB header:protein binding
Chain: B: PDB Molecule:cbbq/nirq/norq domain protein;
PDBTitle: structural characterization of a newly identified component of alpha-2 carboxysomes: the aaa+ domain protein cso-cbbq
110c4ciuA_
not modelled 94.3 21
PDB header:chaperone
Chain: A: PDB Molecule:chaperone protein clpb;
PDBTitle: crystal structure of e. coli clpb
111c4xgcE_
not modelled 94.3 14
PDB header:dna binding protein
Chain: E: PDB Molecule:origin recognition complex subunit 5;
PDBTitle: crystal structure of the eukaryotic origin recognition complex
112c5kzfJ_
not modelled 94.2 17
PDB header:hydrolase
Chain: J: PDB Molecule:proteasome-associated atpase;
PDBTitle: crystal structure of near full-length hexameric mycobacterium2 tuberculosis proteasomal atpase mpa in apo form
113c6qelL_
not modelled 94.1 18
PDB header:replication
Chain: L: PDB Molecule:dna replication protein dnac;
PDBTitle: e. coli dnabc apo complex
114c5uj7B_
not modelled 94.1 19
PDB header:dna binding protein
Chain: B: PDB Molecule:origin recognition complex subunit 1;
PDBTitle: structure of the active form of human origin recognition complex2 atpase motor module, complex subunits 1, 4, 5
115c5vy9C_
not modelled 94.1 20
PDB header:chaperone
Chain: C: PDB Molecule:heat shock protein 104;
PDBTitle: s. cerevisiae hsp104:casein complex, middle domain conformation
116d1e32a2
not modelled 93.7 21
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
117c5udbD_
not modelled 93.7 16
PDB header:replication
Chain: D: PDB Molecule:origin recognition complex subunit 4;
PDBTitle: structural basis of mcm2-7 replicative helicase loading by orc-cdc62 and cdt1
118c3ja86_
not modelled 93.6 21
PDB header:hydrolase
Chain: 6: PDB Molecule:minichromosome maintenance 6;
PDBTitle: cryo-em structure of the mcm2-7 double hexamer
119c3pxiB_
not modelled 93.5 17
PDB header:protein binding
Chain: B: PDB Molecule:negative regulator of genetic competence clpc/mecb;
PDBTitle: structure of meca108:clpc
120c3co5B_
not modelled 93.4 13
PDB header:transcription regulator
Chain: B: PDB Molecule:putative two-component system transcriptional response
PDBTitle: crystal structure of sigma-54 interaction domain of putative2 transcriptional response regulator from neisseria gonorrhoeae

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below