Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2693c_(-)_3010707_3011378
DateWed Aug 7 12:50:34 BST 2019
Unique Job ID81a382c22ff45571
SequenceVNANRTSAQR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:67.525 Y:53.997 Z:54.270
Model (left) based on template c2w8aC_
Top template information
PDB header:membrane protein
Chain: C: PDB Molecule:glycine betaine transporter betp;
PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate
Confidence and coverage
Confidence: 77.8% Coverage: 73%
163 residues ( 73% of your sequence) have been modelled with 77.8% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2w8aC_
77.8 17
PDB header:membrane protein
Chain: C: PDB Molecule:glycine betaine transporter betp;
PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate
2c6hwhX_
20.3 16
PDB header:electron transport
Chain: X: PDB Molecule:cytochrome c oxidase polypeptide 4;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
3c4ainB_
20.0 17
PDB header:membrane protein
Chain: B: PDB Molecule:glycine betaine transporter betp;
PDBTitle: crystal structure of betp with asymmetric protomers.
4c2pmzQ_
17.2 29
PDB header:translation, transferase
Chain: Q: PDB Molecule:dna-directed rna polymerase subunit a;
PDBTitle: archaeal rna polymerase from sulfolobus solfataricus
5d1i6vd_
15.9 19
Fold:beta and beta-prime subunits of DNA dependent RNA-polymerase
Superfamily:beta and beta-prime subunits of DNA dependent RNA-polymerase
Family:RNA-polymerase beta-prime
6c1i6vD_
15.9 19
PDB header:transcription
Chain: D: PDB Molecule:dna-directed rna polymerase;
PDBTitle: thermus aquaticus core rna polymerase-rifampicin complex
7c1i6hA_
13.7 24
PDB header:transcription/dna-rna hybrid
Chain: A: PDB Molecule:dna-directed rna polymerase ii largest subunit;
PDBTitle: rna polymerase ii elongation complex
8c4igcD_
13.1 24
PDB header:transcription, transferase
Chain: D: PDB Molecule:dna-directed rna polymerase subunit beta';
PDBTitle: x-ray crystal structure of escherichia coli sigma70 holoenzyme
9c5zlgA_
12.7 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome b reductase 1;
PDBTitle: human duodenal cytochrome b (dcytb) in zinc ion and ascorbate bound2 form
10c4g7oN_
12.6 19
PDB header:transcription, transferase/dna
Chain: N: PDB Molecule:dna-directed rna polymerase subunit beta';
PDBTitle: crystal structure of thermus thermophilus transcription initiation2 complex containing 2 nt of rna
11c3aoiI_
12.3 19
PDB header:transcription, transferase/dna/rna
Chain: I: PDB Molecule:dna-directed rna polymerase subunit beta';
PDBTitle: rna polymerase-gfh1 complex (crystal type 2)
12c2o5jN_
12.1 19
PDB header:transferase/dna-rna hybrid
Chain: N: PDB Molecule:dna-directed rna polymerase beta' chain;
PDBTitle: crystal structure of the t. thermophilus rnap polymerase elongation2 complex with the ntp substrate analog
13c2o5iD_
12.0 19
PDB header:transferase/dna-rna hybrid
Chain: D: PDB Molecule:dna-directed rna polymerase beta' chain;
PDBTitle: crystal structure of the t. thermophilus rna polymerase elongation2 complex
14d1twfa_
11.8 24
Fold:beta and beta-prime subunits of DNA dependent RNA-polymerase
Superfamily:beta and beta-prime subunits of DNA dependent RNA-polymerase
Family:RNA-polymerase beta-prime
15c4wqsD_
11.6 19
PDB header:transferase/dna/rna
Chain: D: PDB Molecule:dna-directed rna polymerase subunit beta';
PDBTitle: thermus thermophilus rna polymerase backtracked complex
16c6cceD_
11.5 24
PDB header:transcription/dna/antibiotic
Chain: D: PDB Molecule:dna-directed rna polymerase subunit beta';
PDBTitle: crystal structure of a mycobacterium smegmatis rna polymerase2 transcription initiation complex with inhibitor kanglemycin a
17c6drdA_
11.3 24
PDB header:transferase
Chain: A: PDB Molecule:dna-directed rna polymerase ii subunit rpb1;
PDBTitle: rna pol ii(g)
18c5x22D_
10.4 19
PDB header:transferase/dna
Chain: D: PDB Molecule:dna-directed rna polymerase subunit beta';
PDBTitle: crystal structure of thermus thermophilus transcription initiation2 complex with gpa and cmpcpp
19c1l9uD_
10.3 19
PDB header:transcription
Chain: D: PDB Molecule:rna polymerase, beta-prime subunit;
PDBTitle: thermus aquaticus rna polymerase holoenzyme at 4 a2 resolution
20c4c3iA_
10.1 14
PDB header:transferase
Chain: A: PDB Molecule:dna-directed rna polymerase i subunit rpa190;
PDBTitle: structure of 14-subunit rna polymerase i at 3.0 a resolution, crystal2 form c2-100
21c5tbzD_
not modelled 10.1 24
PDB header:transcription/rna
Chain: D: PDB Molecule:dna-directed rna polymerase subunit beta';
PDBTitle: e. coli rna polymerase complexed with nusg
22c3aoiN_
not modelled 9.9 19
PDB header:transcription, transferase/dna/rna
Chain: N: PDB Molecule:dna-directed rna polymerase subunit beta';
PDBTitle: rna polymerase-gfh1 complex (crystal type 2)
23d1smyd_
not modelled 9.9 19
Fold:beta and beta-prime subunits of DNA dependent RNA-polymerase
Superfamily:beta and beta-prime subunits of DNA dependent RNA-polymerase
Family:RNA-polymerase beta-prime
24c5flmA_
not modelled 9.8 24
PDB header:transcription
Chain: A: PDB Molecule:dna-directed rna polymerase;
PDBTitle: structure of transcribing mammalian rna polymerase ii
25c5m3fA_
not modelled 9.7 14
PDB header:transcription
Chain: A: PDB Molecule:dna-directed rna polymerase i subunit rpa190;
PDBTitle: yeast rna polymerase i elongation complex at 3.8a
26c4llgJ_
not modelled 9.7 24
PDB header:transferase
Chain: J: PDB Molecule:dna-directed rna polymerase subunit beta';
PDBTitle: crystal structure analysis of the e.coli holoenzyme/gp2 complex
27c3h0gA_
not modelled 9.6 19
PDB header:transcription
Chain: A: PDB Molecule:dna-directed rna polymerase ii subunit rpb1;
PDBTitle: rna polymerase ii from schizosaccharomyces pombe
28c6gmlA_
not modelled 9.4 24
PDB header:transcription
Chain: A: PDB Molecule:dna-directed rna polymerase subunit;
PDBTitle: structure of paused transcription complex pol ii-dsif-nelf
29c6j9eD_
not modelled 9.3 19
PDB header:transcription
Chain: D: PDB Molecule:dna-directed rna polymerase subunit beta';
PDBTitle: cryo-em structure of xanthomonos oryzae transcription elongation2 complex with nusa and the bacteriophage protein p7
30c5xj0D_
not modelled 9.1 17
PDB header:transferase/transcription
Chain: D: PDB Molecule:dna-directed rna polymerase subunit beta';
PDBTitle: t. thermophilus rna polymerase holoenzyme bound with gp39 and gp76
31c5fjaA_
not modelled 8.7 24
PDB header:transcription
Chain: A: PDB Molecule:dna-directed rna polymerase iii subunit rpc1;
PDBTitle: cryo-em structure of yeast rna polymerase iii at 4.7 a
32c1twaA_
not modelled 8.2 24
PDB header:transcription
Chain: A: PDB Molecule:dna-directed rna polymerase ii largest subunit;
PDBTitle: rna polymerase ii complexed with atp
33c5tw1D_
not modelled 8.0 24
PDB header:transcription activator/transferase/dna
Chain: D: PDB Molecule:dna-directed rna polymerase subunit beta';
PDBTitle: crystal structure of a mycobacterium smegmatis transcription2 initiation complex with rbpa
34c4qiwA_
not modelled 7.3 29
PDB header:transcription
Chain: A: PDB Molecule:dna-directed rna polymerase;
PDBTitle: crystal structure of euryarchaeal rna polymerase from thermococcus2 kodakarensis
35d1ynjd1
not modelled 7.1 19
Fold:beta and beta-prime subunits of DNA dependent RNA-polymerase
Superfamily:beta and beta-prime subunits of DNA dependent RNA-polymerase
Family:RNA-polymerase beta-prime
36c4b1pW_
not modelled 6.4 29
PDB header:transferase/dna
Chain: W: PDB Molecule:dna-directed rna polymerase;
PDBTitle: archaeal rnap-dna binary complex at 4.32ang
37c4xsxJ_
not modelled 6.3 24
PDB header:transcription/antibiotic
Chain: J: PDB Molecule:dna-directed rna polymerase subunit beta';
PDBTitle: crystal structure of cbr 703 bound to escherichia coli rna polymerase2 holoenzyme
38c3iydD_
not modelled 5.9 24
PDB header:transcription/dna
Chain: D: PDB Molecule:dna-directed rna polymerase subunit beta;
PDBTitle: three-dimensional em structure of an intact activator-dependent2 transcription initiation complex

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below